2P9UF

Crystal structure of bovine arp2/3 complex co-crystallized with amp-pnp and calcium
Total Genus 56
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
167
structure length
167
Chain Sequence
TATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Structural protein
molecule keywords Actin-like protein 3
publication title Insights into the Influence of Nucleotides on Actin Family Proteins from Seven Structures of Arp2/3 Complex.
pubmed doi rcsb
source organism Bos taurus
total genus 56
structure length 167
sequence length 167
ec nomenclature
pdb deposition date 2007-03-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
F PF05856 ARPC4 ARP2/3 complex 20 kDa subunit (ARPC4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1460.20 Alpha Beta 2-Layer Sandwich Yope Regulator; Chain: A, Yope Regulator; Chain: A, 2p9uF00
2P9UF 1U2VD 2P9LD 2P9SD 2P9PF 3DXMD 1TYQF 3UKUD 3RSEF 2P9KF 3DXKF 3UKRF 2P9ND 1K8KF 2P9IF 2P9UD 4XEID 2P9PD 4JD2F 3ULEF 1TYQD 3RSED 2P9KD 3DXKD 3UKRD 1K8KD 3DWLF 2P9ID 1U2VF 2P9SF 2P9LF 3DXMF 4JD2D 3ULED 4XEIF 3UKUF 2P9NF 3DWLD
chains in the Genus database with same CATH superfamily
2P9UF 2FM8A 1U2VD 4G6TA 2P9LD 2P9SD 2P9PF 3DXMD 1XKPC 3VX7B 1TYQF 1TTWA 2OD0A 3UKUD 3RSEF 2MQDA 2P9KF 1XKPB 3DXKF 3UKRF 1K6ZA 2P9ND 1JYOA 1K8KF 1N5BA 2P9IF 2P9UD 2DYTA 3CXJA 4XEID 1K3SA 2P9PD 4JD2F 3KXYA 2PLGA 3ULEF 1TYQD 2BSIA 3VX8B 2LPUA 4H5BA 3RSED 4AKXA 1JYAA 2KC5A 2P9KD 3DXKD 3UKRD 1K3EA 1L2WA 3TU3A 1K8KD 3DWLF 2P9ID 1U2VF 4GSLC 2P9LF 2P9SF 1S28A 2BHOA 3DXMF 2BSHA 4JD2D 2XGAA 4JMFB 3ULED 1RY9A 2BSJA 4XEIF 3UKUF 4EBRA 4GF3A 3EPUA 2P9NF 3DWLD
chains in the Genus database with same CATH topology
2P9UF 2FM8A 1U2VD 4G6TA 2P9LD 2P9SD 2P9PF 3DXMD 1XKPC 3VX7B 1TYQF 1TTWA 3UKUD 3RSEF 2MQDA 2P9KF 1XKPB 3DXKF 3UKRF 1K6ZA 2P9ND 1JYOA 1K8KF 1N5BA 2P9IF 2P9UD 2DYTA 3CXJA 4XEID 1K3SA 2P9PD 4JD2F 3KXYA 2PLGA 3ULEF 1TYQD 2BSIA 3VX8B 2LPUA 4H5BA 3RSED 4AKXA 1JYAA 2KC5A 2P9KD 3DXKD 3UKRD 1K3EA 1L2WA 3TU3A 1K8KD 3DWLF 2P9ID 1U2VF 4GSLC 2P9LF 2P9SF 1S28A 2BHOA 3DXMF 2BSHA 4JD2D 2XGAA 4JMFB 3ULED 1RY9A 2BSJA 4XEIF 3UKUF 4EBRA 4GF3A 3EPUA 2P9NF 3DWLD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2P9U F;  1U2V D;  2P9L D;  2P9S D;  2P9P F;  3DXM D;  1TYQ F;  3UKU D;  3RSE F;  2P9K F;  3DXK F;  3UKR F;  2P9N D;  1K8K F;  2P9I F;  2P9U D;  4XEI D;  2P9P D;  4JD2 F;  3ULE F;  1TYQ D;  3RSE D;  2P9K D;  3DXK D;  3UKR D;  1K8K D;  3DWL F;  2P9I D;  1U2V F;  2P9S F;  2P9L F;  3DXM F;  4JD2 D;  3ULE D;  4XEI F;  3UKU F;  2P9N F;  3DWL D; 
#chains in the Genus database with same CATH topology
 2P9U F;  2FM8 A;  1U2V D;  4G6T A;  2P9L D;  2P9S D;  2P9P F;  3DXM D;  1XKP C;  3VX7 B;  1TYQ F;  1TTW A;  2OD0 A;  3UKU D;  3RSE F;  2MQD A;  2P9K F;  1XKP B;  3DXK F;  3UKR F;  1K6Z A;  2P9N D;  1JYO A;  1K8K F;  1N5B A;  2P9I F;  2P9U D;  2DYT A;  3CXJ A;  4XEI D;  1K3S A;  2P9P D;  4JD2 F;  3KXY A;  2PLG A;  3ULE F;  1TYQ D;  2BSI A;  3VX8 B;  2LPU A;  4H5B A;  3RSE D;  4AKX A;  1JYA A;  2KC5 A;  2P9K D;  3DXK D;  3UKR D;  1K3E A;  1L2W A;  3TU3 A;  1K8K D;  3DWL F;  2P9I D;  1U2V F;  4GSL C;  2P9L F;  2P9S F;  1S28 A;  2BHO A;  3DXM F;  2BSH A;  4JD2 D;  2XGA A;  4JMF B;  3ULE D;  1RY9 A;  2BSJ A;  4XEI F;  3UKU F;  4EBR A;  4GF3 A;  3EPU A;  2P9N F;  3DWL D; 
#chains in the Genus database with same CATH homology
 2P9U F;  2FM8 A;  1U2V D;  4G6T A;  2P9L D;  2P9S D;  2P9P F;  3DXM D;  1XKP C;  3VX7 B;  1TYQ F;  1TTW A;  3UKU D;  3RSE F;  2MQD A;  2P9K F;  1XKP B;  3DXK F;  3UKR F;  1K6Z A;  2P9N D;  1JYO A;  1K8K F;  1N5B A;  2P9I F;  2P9U D;  2DYT A;  3CXJ A;  4XEI D;  1K3S A;  2P9P D;  4JD2 F;  3KXY A;  2PLG A;  3ULE F;  1TYQ D;  2BSI A;  3VX8 B;  2LPU A;  4H5B A;  3RSE D;  4AKX A;  1JYA A;  2KC5 A;  2P9K D;  3DXK D;  3UKR D;  1K3E A;  1L2W A;  3TU3 A;  1K8K D;  3DWL F;  2P9I D;  1U2V F;  4GSL C;  2P9L F;  2P9S F;  1S28 A;  2BHO A;  3DXM F;  2BSH A;  4JD2 D;  2XGA A;  4JMF B;  3ULE D;  1RY9 A;  2BSJ A;  4XEI F;  3UKU F;  4EBR A;  4GF3 A;  3EPU A;  2P9N F;  3DWL D; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...