2PB4A

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 84
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGMSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords diphthine synthase
total genus 84
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2pb4A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2pb4A01
1PJSA 3I4TA 2OWVA 2PCMA 2P6LA 2EHLA 2ENIA 2DEKA 1VE2A 2E8QA 2ZVBA 2DV3A 1WNGA 2OWFA 1VA0A 1VHVA 2P6DA 2DXWA 2E0KA 2BB3A 2EK2A 2EL0A 2E07A 2EJZA 2EGSA 2EH4A 3FQ6A 1CBFA 2EL3A 2EMUA 2DV5A 2EGLA 3KWPA 2EH2A 2Z6RA 2P9DA 1PJTA 2EN5A 3ND1A 2HUVA 4E16A 2DV7A 2HUQA 2OWUA 2E15A 2YBOA 2ED3A 2PCAA 2P6IA 2QBUA 2EL1A 1WDEA 2E8SA 2E4NA 2P5CA 3NUTA 3NEIA 1PJQA 2DSGA 2E7RA 2DSIA 2HUXA 2EL2A 2EK3A 2EHCA 2EK7A 2E17A 2EH5A 2E16A 2PCHA 3NDCA 2E8HA 5HW4A 1S4DA 2E0NA 2PCGA 1WYZA 3HH1A 2PB4A 1V9AA 2EMRA 3FFYA 2CBFA 2EKAA 2EK4A 2HUTA 2DV4A 2PCIA 2NPNA 2EEQA 2E08A 2P2XA 2E8RA 2DSHA 2OWKA 2EJKA 2YBQA 2ELDA 2P5FA 2PB6A 2EJJA 2ED5A 2P6KA 2DXXA 2HR8A 1VCEA 2PB5A 2PCKA 2E4RA 2ZVCA 2DXVA 2ELEA 2EGBA 2OWGA
chains in the Genus database with same CATH superfamily
1PJSA 4N7BA 3I4TA 2OWVA 2PCMA 2P6LA 2EHLA 2ENIA 2DEKA 1VE2A 2E8QA 2ZVBA 2DV3A 1WNGA 2OWFA 3ZGNA 1VA0A 3SZOA 1VHVA 3SZLA 3UWMA 3F7TA 2P6DA 2DXWA 2E0KA 2BB3A 2EK2A 3UV6A 2EL0A 4MV5A 3UV7A 2E07A 2EJZA 2EGSA 2EH4A 3FQ6A 1CBFA 2EL3A 2EMUA 3UTCA 2DV5A 2EGLA 4H4EA 3KWPA 2EH2A 2Z6RA 3SZUA 4MV0A 2P9DA 1PJTA 2EN5A 3ND1A 2HUVA 4E16A 3T0GA 2DV7A 2HUQA 2OWUA 2E15A 2YBOA 2ED3A 2PCAA 3KELA 3UTDA 2P6IA 2QBUA 2EL1A 1WDEA 4MUXA 2E8SA 2E4NA 2P5CA 3NUTA 3KE9A 3NEIA 3ZGLA 1PJQA 3URKA 2DSGA 2E7RA 2DSIA 2HUXA 2EL2A 2EK3A 2EHCA 2EK7A 2E17A 3UV3A 3KE8A 2EH5A 3TIXB 2E16A 2KYYA 2PCHA 2E8HA 3NDCA 5HW4A 1S4DA 4H4CA 4EB3A 2E0NA 2PCGA 3T0FA 1WYZA 3HH1A 2PB4A 1V9AA 2EMRA 3FFYA 2CBFA 2EKAA 2EK4A 2HUTA 2DV4A 2PCIA 3LMMA 3KEFA 4H4DA 2NPNA 2EEQA 2E08A 2P2XA 2E8RA 3DNFA 2DSHA 2OWKA 2EJKA 2YBQA 2ELDA 2P5FA 2PB6A 2EJJA 2ED5A 2P6KA 4MUYA 2DXXA 2HR8A 3KEMA 1VCEA 2PB5A 2PCKA 2E4RA 2ZVCA 2DXVA 2ELEA 2EGBA 2OWGA
chains in the Genus database with same CATH topology
1PJSA 4N7BA 3I4TA 2OWVA 2PCMA 2P6LA 2EHLA 2ENIA 2DEKA 1VE2A 2E8QA 2ZVBA 2DV3A 1WNGA 2OWFA 3ZGNA 1VA0A 3SZOA 1VHVA 3SZLA 3UWMA 3F7TA 2P6DA 2DXWA 2E0KA 2BB3A 2EK2A 3UV6A 2EL0A 4MV5A 3UV7A 2E07A 2EJZA 2EGSA 2EH4A 3FQ6A 1CBFA 2EL3A 2EMUA 3UTCA 2DV5A 2EGLA 4H4EA 3KWPA 2EH2A 2Z6RA 3SZUA 4MV0A 2P9DA 1PJTA 2EN5A 3ND1A 2HUVA 4E16A 3T0GA 2DV7A 2HUQA 2OWUA 2E15A 2YBOA 2ED3A 2PCAA 3KELA 3UTDA 2P6IA 2QBUA 2EL1A 1WDEA 4MUXA 2E8SA 2E4NA 2P5CA 3NUTA 3KE9A 3NEIA 3ZGLA 1PJQA 3URKA 2DSGA 2E7RA 2DSIA 2HUXA 2EL2A 2EK3A 2EHCA 2EK7A 2E17A 3UV3A 3KE8A 2EH5A 3TIXB 2E16A 2KYYA 2PCHA 2E8HA 3NDCA 5HW4A 1S4DA 4H4CA 4EB3A 2E0NA 2PCGA 3T0FA 1WYZA 3HH1A 2PB4A 1V9AA 2EMRA 3FFYA 2CBFA 2EKAA 2EK4A 2HUTA 2DV4A 2PCIA 3LMMA 3KEFA 4H4DA 2NPNA 2EEQA 2E08A 2P2XA 2E8RA 3DNFA 2DSHA 2OWKA 2EJKA 2YBQA 2ELDA 2P5FA 2PB6A 2EJJA 2ED5A 2P6KA 4MUYA 2DXXA 2HR8A 3KEMA 1VCEA 2PB5A 2PCKA 2E4RA 2ZVCA 2DXVA 2ELEA 2EGBA 2OWGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PJS A;  3I4T A;  2OWV A;  2PCM A;  2P6L A;  2EHL A;  2ENI A;  2DEK A;  1VE2 A;  2E8Q A;  2ZVB A;  2DV3 A;  1WNG A;  2OWF A;  1VA0 A;  1VHV A;  2P6D A;  2DXW A;  2E0K A;  2BB3 A;  2EK2 A;  2EL0 A;  2E07 A;  2EJZ A;  2EGS A;  2EH4 A;  3FQ6 A;  1CBF A;  2EL3 A;  2EMU A;  2DV5 A;  2EGL A;  3KWP A;  2EH2 A;  2Z6R A;  2P9D A;  1PJT A;  2EN5 A;  3ND1 A;  2HUV A;  4E16 A;  2DV7 A;  2HUQ A;  2OWU A;  2E15 A;  2YBO A;  2ED3 A;  2PCA A;  2P6I A;  2QBU A;  2EL1 A;  1WDE A;  2E8S A;  2E4N A;  2P5C A;  3NUT A;  3NEI A;  1PJQ A;  2DSG A;  2E7R A;  2DSI A;  2HUX A;  2EL2 A;  2EK3 A;  2EHC A;  2EK7 A;  2E17 A;  2EH5 A;  2E16 A;  2PCH A;  3NDC A;  2E8H A;  5HW4 A;  1S4D A;  2E0N A;  2PCG A;  1WYZ A;  3HH1 A;  2PB4 A;  1V9A A;  2EMR A;  3FFY A;  2CBF A;  2EKA A;  2EK4 A;  2HUT A;  2DV4 A;  2PCI A;  2NPN A;  2EEQ A;  2E08 A;  2P2X A;  2E8R A;  2DSH A;  2OWK A;  2EJK A;  2YBQ A;  2ELD A;  2P5F A;  2PB6 A;  2EJJ A;  2ED5 A;  2P6K A;  2DXX A;  2HR8 A;  1VCE A;  2PB5 A;  2PCK A;  2E4R A;  2ZVC A;  2DXV A;  2ELE A;  2EGB A;  2OWG A; 
#chains in the Genus database with same CATH topology
 1PJS A;  4N7B A;  3I4T A;  2OWV A;  2PCM A;  2P6L A;  2EHL A;  2ENI A;  2DEK A;  1VE2 A;  2E8Q A;  2ZVB A;  2DV3 A;  1WNG A;  2OWF A;  3ZGN A;  1VA0 A;  3SZO A;  1VHV A;  3SZL A;  3UWM A;  3F7T A;  2P6D A;  2DXW A;  2E0K A;  2BB3 A;  2EK2 A;  3UV6 A;  2EL0 A;  4MV5 A;  3UV7 A;  2E07 A;  2EJZ A;  2EGS A;  2EH4 A;  3FQ6 A;  1CBF A;  2EL3 A;  2EMU A;  3UTC A;  2DV5 A;  2EGL A;  4H4E A;  3KWP A;  2EH2 A;  2Z6R A;  3SZU A;  4MV0 A;  2P9D A;  1PJT A;  2EN5 A;  3ND1 A;  2HUV A;  4E16 A;  3T0G A;  2DV7 A;  2HUQ A;  2OWU A;  2E15 A;  2YBO A;  2ED3 A;  2PCA A;  3KEL A;  3UTD A;  2P6I A;  2QBU A;  2EL1 A;  1WDE A;  4MUX A;  2E8S A;  2E4N A;  2P5C A;  3NUT A;  3KE9 A;  3NEI A;  3ZGL A;  1PJQ A;  3URK A;  2DSG A;  2E7R A;  2DSI A;  2HUX A;  2EL2 A;  2EK3 A;  2EHC A;  2EK7 A;  2E17 A;  3UV3 A;  3KE8 A;  2EH5 A;  3TIX B;  2E16 A;  2KYY A;  2PCH A;  2E8H A;  3NDC A;  5HW4 A;  1S4D A;  4H4C A;  4EB3 A;  2E0N A;  2PCG A;  3T0F A;  1WYZ A;  3HH1 A;  2PB4 A;  1V9A A;  2EMR A;  3FFY A;  2CBF A;  2EKA A;  2EK4 A;  2HUT A;  2DV4 A;  2PCI A;  3LMM A;  3KEF A;  4H4D A;  2NPN A;  2EEQ A;  2E08 A;  2P2X A;  2E8R A;  3DNF A;  2DSH A;  2OWK A;  2EJK A;  2YBQ A;  2ELD A;  2P5F A;  2PB6 A;  2EJJ A;  2ED5 A;  2P6K A;  4MUY A;  2DXX A;  2HR8 A;  3KEM A;  1VCE A;  2PB5 A;  2PCK A;  2E4R A;  2ZVC A;  2DXV A;  2ELE A;  2EGB A;  2OWG A; 
#chains in the Genus database with same CATH homology
 1PJS A;  4N7B A;  3I4T A;  2OWV A;  2PCM A;  2P6L A;  2EHL A;  2ENI A;  2DEK A;  1VE2 A;  2E8Q A;  2ZVB A;  2DV3 A;  1WNG A;  2OWF A;  3ZGN A;  1VA0 A;  3SZO A;  1VHV A;  3SZL A;  3UWM A;  3F7T A;  2P6D A;  2DXW A;  2E0K A;  2BB3 A;  2EK2 A;  3UV6 A;  2EL0 A;  4MV5 A;  3UV7 A;  2E07 A;  2EJZ A;  2EGS A;  2EH4 A;  3FQ6 A;  1CBF A;  2EL3 A;  2EMU A;  3UTC A;  2DV5 A;  2EGL A;  4H4E A;  3KWP A;  2EH2 A;  2Z6R A;  3SZU A;  4MV0 A;  2P9D A;  1PJT A;  2EN5 A;  3ND1 A;  2HUV A;  4E16 A;  3T0G A;  2DV7 A;  2HUQ A;  2OWU A;  2E15 A;  2YBO A;  2ED3 A;  2PCA A;  3KEL A;  3UTD A;  2P6I A;  2QBU A;  2EL1 A;  1WDE A;  4MUX A;  2E8S A;  2E4N A;  2P5C A;  3NUT A;  3KE9 A;  3NEI A;  3ZGL A;  1PJQ A;  3URK A;  2DSG A;  2E7R A;  2DSI A;  2HUX A;  2EL2 A;  2EK3 A;  2EHC A;  2EK7 A;  2E17 A;  3UV3 A;  3KE8 A;  2EH5 A;  3TIX B;  2E16 A;  2KYY A;  2PCH A;  2E8H A;  3NDC A;  5HW4 A;  1S4D A;  4H4C A;  4EB3 A;  2E0N A;  2PCG A;  3T0F A;  1WYZ A;  3HH1 A;  2PB4 A;  1V9A A;  2EMR A;  3FFY A;  2CBF A;  2EKA A;  2EK4 A;  2HUT A;  2DV4 A;  2PCI A;  3LMM A;  3KEF A;  4H4D A;  2NPN A;  2EEQ A;  2E08 A;  2P2X A;  2E8R A;  3DNF A;  2DSH A;  2OWK A;  2EJK A;  2YBQ A;  2ELD A;  2P5F A;  2PB6 A;  2EJJ A;  2ED5 A;  2P6K A;  4MUY A;  2DXX A;  2HR8 A;  3KEM A;  1VCE A;  2PB5 A;  2PCK A;  2E4R A;  2ZVC A;  2DXV A;  2ELE A;  2EGB A;  2OWG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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