2PB4A

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 84
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGMSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords diphthine synthase
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 84
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2pb4A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2pb4A01
2PCGA 2HUXA 3NEIA 2EN5A 2EGLA 2P9DA 2ZVCA 2EMRA 1VHVA 2PB4A 5HW4A 2ENIA 2EK4A 1WYZA 2EGBA 2HR8A 2YBQA 2EH5A 2E8HA 2CBFA 1PJTA 4E16A 2EJJA 2ZVBA 1CBFA 2P5FA 1PJSA 2E0KA 2EL3A 1VA0A 2EH2A 2Z6RA 2HUQA 1VE2A 2DV3A 2DSIA 1WDEA 3NDCA 2PB5A 2DSGA 2PCKA 2EEQA 2DXVA 2ED5A 2NPNA 2E4RA 2E0NA 2EL0A 2YBOA 3FQ6A 1WNGA 2DSHA 2PCAA 2OWFA 3KWPA 1S4DA 1V9AA 2DV7A 2ELEA 2PCMA 2EJKA 2EK7A 2P5CA 2E8RA 2QBUA 2EH4A 2P6KA 2EHCA 2E16A 2DXWA 2EJZA 2DV4A 2EK3A 2OWKA 2PCHA 2PCIA 2HUTA 2E8SA 2BB3A 2P6DA 2DV5A 2EL2A 2P2XA 3ND1A 3HH1A 2ED3A 3I4TA 2HUVA 2EHLA 2E7RA 2OWUA 2OWVA 3NUTA 2E4NA 2ELDA 1PJQA 2EK2A 2E17A 2EMUA 2E08A 2P6LA 2E07A 2E15A 2P6IA 2DEKA 1VCEA 3FFYA 2E8QA 2EL1A 2OWGA 2PB6A 2EKAA 2DXXA 2EGSA
chains in the Genus database with same CATH superfamily
3UV3A 2KYYA 2PCGA 3UV7A 3DNFA 2HUXA 3NEIA 2EN5A 2EGLA 3URKA 2P9DA 4H4CA 2ZVCA 2EMRA 1VHVA 2PB4A 3UTCA 5HW4A 2ENIA 2EK4A 1WYZA 2EGBA 2HR8A 2YBQA 2EH5A 4EB3A 2E8HA 2CBFA 1PJTA 4E16A 2EJJA 2ZVBA 3SZOA 1CBFA 2P5FA 1PJSA 2E0KA 4MUXA 2EL3A 1VA0A 2EH2A 2Z6RA 2HUQA 1VE2A 2DV3A 2DSIA 1WDEA 3NDCA 2PB5A 3SZLA 2DSGA 2PCKA 2EEQA 2DXVA 2ED5A 2NPNA 4MV5A 2E4RA 2E0NA 2EL0A 2YBOA 3SZUA 3FQ6A 1WNGA 2DSHA 2PCAA 2OWFA 3F7TA 3KWPA 3ZGNA 1S4DA 1V9AA 2DV7A 3UV6A 3ZGLA 2ELEA 2PCMA 2EJKA 2EK7A 2P5CA 2E8RA 3KE8A 4N7BA 2QBUA 2EH4A 2P6KA 3UTDA 2EHCA 3UWMA 2E16A 2DXWA 2EJZA 4MV0A 2DV4A 2EK3A 2OWKA 2PCHA 2PCIA 2HUTA 2E8SA 2BB3A 2P6DA 2DV5A 3T0GA 3TIXB 3LMMA 4H4DA 2EL2A 4MUYA 2P2XA 3KELA 3ND1A 3HH1A 2ED3A 3I4TA 3T0FA 2HUVA 2EHLA 2E7RA 2OWUA 2OWVA 3NUTA 2E4NA 2ELDA 3KE9A 1PJQA 2EK2A 2E17A 2EMUA 2E08A 2P6LA 2E07A 2E15A 2P6IA 2DEKA 1VCEA 3FFYA 2E8QA 4H4EA 2EL1A 2OWGA 2PB6A 2EKAA 2DXXA 2EGSA 3KEFA 3KEMA
chains in the Genus database with same CATH topology
3UV3A 2KYYA 2PCGA 3UV7A 3DNFA 2HUXA 3NEIA 2EN5A 2EGLA 3URKA 2P9DA 4H4CA 2ZVCA 2EMRA 1VHVA 2PB4A 3UTCA 5HW4A 2ENIA 2EK4A 1WYZA 2EGBA 2HR8A 2YBQA 2EH5A 4EB3A 2E8HA 2CBFA 1PJTA 4E16A 2EJJA 2ZVBA 3SZOA 1CBFA 2P5FA 1PJSA 2E0KA 4MUXA 2EL3A 1VA0A 2EH2A 2Z6RA 2HUQA 1VE2A 2DV3A 2DSIA 1WDEA 3NDCA 2PB5A 3SZLA 2DSGA 2PCKA 2EEQA 2DXVA 2ED5A 2NPNA 4MV5A 2E4RA 2E0NA 2EL0A 2YBOA 3SZUA 3FQ6A 1WNGA 2DSHA 2PCAA 2OWFA 3F7TA 3KWPA 3ZGNA 1S4DA 1V9AA 2DV7A 3UV6A 3ZGLA 2ELEA 2PCMA 2EJKA 2EK7A 2P5CA 2E8RA 3KE8A 4N7BA 2QBUA 2EH4A 2P6KA 3UTDA 2EHCA 3UWMA 2E16A 2DXWA 2EJZA 4MV0A 2DV4A 2EK3A 2OWKA 2PCHA 2PCIA 2HUTA 2E8SA 2BB3A 2P6DA 2DV5A 3T0GA 3TIXB 3LMMA 4H4DA 2EL2A 4MUYA 2P2XA 3KELA 3ND1A 3HH1A 2ED3A 3I4TA 3T0FA 2HUVA 2EHLA 2E7RA 2OWUA 2OWVA 3NUTA 2E4NA 2ELDA 3KE9A 1PJQA 2EK2A 2E17A 2EMUA 2E08A 2P6LA 2E07A 2E15A 2P6IA 2DEKA 1VCEA 3FFYA 2E8QA 4H4EA 2EL1A 2OWGA 2PB6A 2EKAA 2DXXA 2EGSA 3KEFA 3KEMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PCG A;  2HUX A;  3NEI A;  2EN5 A;  2EGL A;  2P9D A;  2ZVC A;  2EMR A;  1VHV A;  2PB4 A;  5HW4 A;  2ENI A;  2EK4 A;  1WYZ A;  2EGB A;  2HR8 A;  2YBQ A;  2EH5 A;  2E8H A;  2CBF A;  1PJT A;  4E16 A;  2EJJ A;  2ZVB A;  1CBF A;  2P5F A;  1PJS A;  2E0K A;  2EL3 A;  1VA0 A;  2EH2 A;  2Z6R A;  2HUQ A;  1VE2 A;  2DV3 A;  2DSI A;  1WDE A;  3NDC A;  2PB5 A;  2DSG A;  2PCK A;  2EEQ A;  2DXV A;  2ED5 A;  2NPN A;  2E4R A;  2E0N A;  2EL0 A;  2YBO A;  3FQ6 A;  1WNG A;  2DSH A;  2PCA A;  2OWF A;  3KWP A;  1S4D A;  1V9A A;  2DV7 A;  2ELE A;  2PCM A;  2EJK A;  2EK7 A;  2P5C A;  2E8R A;  2QBU A;  2EH4 A;  2P6K A;  2EHC A;  2E16 A;  2DXW A;  2EJZ A;  2DV4 A;  2EK3 A;  2OWK A;  2PCH A;  2PCI A;  2HUT A;  2E8S A;  2BB3 A;  2P6D A;  2DV5 A;  2EL2 A;  2P2X A;  3ND1 A;  3HH1 A;  2ED3 A;  3I4T A;  2HUV A;  2EHL A;  2E7R A;  2OWU A;  2OWV A;  3NUT A;  2E4N A;  2ELD A;  1PJQ A;  2EK2 A;  2E17 A;  2EMU A;  2E08 A;  2P6L A;  2E07 A;  2E15 A;  2P6I A;  2DEK A;  1VCE A;  3FFY A;  2E8Q A;  2EL1 A;  2OWG A;  2PB6 A;  2EKA A;  2DXX A;  2EGS A; 
#chains in the Genus database with same CATH topology
 3UV3 A;  2KYY A;  2PCG A;  3UV7 A;  3DNF A;  2HUX A;  3NEI A;  2EN5 A;  2EGL A;  3URK A;  2P9D A;  4H4C A;  2ZVC A;  2EMR A;  1VHV A;  2PB4 A;  3UTC A;  5HW4 A;  2ENI A;  2EK4 A;  1WYZ A;  2EGB A;  2HR8 A;  2YBQ A;  2EH5 A;  4EB3 A;  2E8H A;  2CBF A;  1PJT A;  4E16 A;  2EJJ A;  2ZVB A;  3SZO A;  1CBF A;  2P5F A;  1PJS A;  2E0K A;  4MUX A;  2EL3 A;  1VA0 A;  2EH2 A;  2Z6R A;  2HUQ A;  1VE2 A;  2DV3 A;  2DSI A;  1WDE A;  3NDC A;  2PB5 A;  3SZL A;  2DSG A;  2PCK A;  2EEQ A;  2DXV A;  2ED5 A;  2NPN A;  4MV5 A;  2E4R A;  2E0N A;  2EL0 A;  2YBO A;  3SZU A;  3FQ6 A;  1WNG A;  2DSH A;  2PCA A;  2OWF A;  3F7T A;  3KWP A;  3ZGN A;  1S4D A;  1V9A A;  2DV7 A;  3UV6 A;  3ZGL A;  2ELE A;  2PCM A;  2EJK A;  2EK7 A;  2P5C A;  2E8R A;  3KE8 A;  4N7B A;  2QBU A;  2EH4 A;  2P6K A;  3UTD A;  2EHC A;  3UWM A;  2E16 A;  2DXW A;  2EJZ A;  4MV0 A;  2DV4 A;  2EK3 A;  2OWK A;  2PCH A;  2PCI A;  2HUT A;  2E8S A;  2BB3 A;  2P6D A;  2DV5 A;  3T0G A;  3TIX B;  3LMM A;  4H4D A;  2EL2 A;  4MUY A;  2P2X A;  3KEL A;  3ND1 A;  3HH1 A;  2ED3 A;  3I4T A;  3T0F A;  2HUV A;  2EHL A;  2E7R A;  2OWU A;  2OWV A;  3NUT A;  2E4N A;  2ELD A;  3KE9 A;  1PJQ A;  2EK2 A;  2E17 A;  2EMU A;  2E08 A;  2P6L A;  2E07 A;  2E15 A;  2P6I A;  2DEK A;  1VCE A;  3FFY A;  2E8Q A;  4H4E A;  2EL1 A;  2OWG A;  2PB6 A;  2EKA A;  2DXX A;  2EGS A;  3KEF A;  3KEM A; 
#chains in the Genus database with same CATH homology
 3UV3 A;  2KYY A;  2PCG A;  3UV7 A;  3DNF A;  2HUX A;  3NEI A;  2EN5 A;  2EGL A;  3URK A;  2P9D A;  4H4C A;  2ZVC A;  2EMR A;  1VHV A;  2PB4 A;  3UTC A;  5HW4 A;  2ENI A;  2EK4 A;  1WYZ A;  2EGB A;  2HR8 A;  2YBQ A;  2EH5 A;  4EB3 A;  2E8H A;  2CBF A;  1PJT A;  4E16 A;  2EJJ A;  2ZVB A;  3SZO A;  1CBF A;  2P5F A;  1PJS A;  2E0K A;  4MUX A;  2EL3 A;  1VA0 A;  2EH2 A;  2Z6R A;  2HUQ A;  1VE2 A;  2DV3 A;  2DSI A;  1WDE A;  3NDC A;  2PB5 A;  3SZL A;  2DSG A;  2PCK A;  2EEQ A;  2DXV A;  2ED5 A;  2NPN A;  4MV5 A;  2E4R A;  2E0N A;  2EL0 A;  2YBO A;  3SZU A;  3FQ6 A;  1WNG A;  2DSH A;  2PCA A;  2OWF A;  3F7T A;  3KWP A;  3ZGN A;  1S4D A;  1V9A A;  2DV7 A;  3UV6 A;  3ZGL A;  2ELE A;  2PCM A;  2EJK A;  2EK7 A;  2P5C A;  2E8R A;  3KE8 A;  4N7B A;  2QBU A;  2EH4 A;  2P6K A;  3UTD A;  2EHC A;  3UWM A;  2E16 A;  2DXW A;  2EJZ A;  4MV0 A;  2DV4 A;  2EK3 A;  2OWK A;  2PCH A;  2PCI A;  2HUT A;  2E8S A;  2BB3 A;  2P6D A;  2DV5 A;  3T0G A;  3TIX B;  3LMM A;  4H4D A;  2EL2 A;  4MUY A;  2P2X A;  3KEL A;  3ND1 A;  3HH1 A;  2ED3 A;  3I4T A;  3T0F A;  2HUV A;  2EHL A;  2E7R A;  2OWU A;  2OWV A;  3NUT A;  2E4N A;  2ELD A;  3KE9 A;  1PJQ A;  2EK2 A;  2E17 A;  2EMU A;  2E08 A;  2P6L A;  2E07 A;  2E15 A;  2P6I A;  2DEK A;  1VCE A;  3FFY A;  2E8Q A;  4H4E A;  2EL1 A;  2OWG A;  2PB6 A;  2EKA A;  2DXX A;  2EGS A;  3KEF A;  3KEM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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