2PB5A

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPMAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords diphthine synthase
total genus 86
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2pb5A02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2pb5A01
2E15A 1VCEA 2OWFA 2ED5A 2OWVA 2DV4A 2EJKA 1PJSA 2P6LA 3ND1A 2DXWA 2PCHA 2PB5A 3NUTA 2DV5A 2EL0A 2HR8A 1V9AA 2EK2A 2EH2A 2P5FA 2E0NA 1VHVA 2QBUA 2P6IA 2DXVA 2HUTA 2DSHA 2P5CA 2EL2A 2EL1A 2YBOA 2HUVA 2NPNA 2DXXA 2BB3A 2E8QA 2Z6RA 3FFYA 3NDCA 2E0KA 2P9DA 1VA0A 2EJJA 2OWUA 2PB4A 5HW4A 2EMRA 1S4DA 2DV7A 3HH1A 1CBFA 2HUXA 2E07A 2DSGA 2DSIA 2ENIA 2DV3A 2EH5A 2EN5A 2PCGA 2CBFA 2EK3A 2P6KA 2DEKA 2ELEA 2PCKA 2ZVCA 2EMUA 1PJTA 2E4NA 2EJZA 2ELDA 2E8RA 2E8HA 2EGBA 1WYZA 2EGSA 1WDEA 2YBQA 2P6DA 2PB6A 2PCMA 2E08A 2E17A 2EK4A 2E16A 2E4RA 3I4TA 2E7RA 2EH4A 1WNGA 2OWKA 2E8SA 2EEQA 2EK7A 2HUQA 2EHLA 2PCAA 3KWPA 2ED3A 2EGLA 2EL3A 2ZVBA 1VE2A 4E16A 2P2XA 2OWGA 1PJQA 3FQ6A 3NEIA 2EKAA 2PCIA 2EHCA
chains in the Genus database with same CATH superfamily
2E15A 1VCEA 2OWFA 2ED5A 2OWVA 2DV4A 3T0GA 2EJKA 1PJSA 2P6LA 2KYYA 3ND1A 3KELA 2DXWA 2PCHA 2PB5A 3NUTA 2DV5A 2EL0A 2HR8A 1V9AA 4MUYA 3T0FA 4N7BA 3ZGLA 4MUXA 2EK2A 2EH2A 2P5FA 3UWMA 2E0NA 1VHVA 2QBUA 2P6IA 2DXVA 2HUTA 2DSHA 2P5CA 2EL2A 2EL1A 2YBOA 3ZGNA 4H4CA 3SZOA 3KE8A 4H4EA 2HUVA 2NPNA 2DXXA 2BB3A 3KE9A 2E8QA 3SZUA 2Z6RA 3FFYA 3NDCA 2E0KA 2P9DA 1VA0A 2EJJA 2OWUA 2PB4A 5HW4A 2EMRA 1S4DA 3UTCA 3DNFA 2DV7A 3HH1A 1CBFA 2HUXA 2E07A 2DSGA 2DSIA 2ENIA 2DV3A 2EH5A 2EN5A 2PCGA 4H4DA 2CBFA 2EK3A 2P6KA 3SZLA 2DEKA 2ELEA 2PCKA 3UV6A 2ZVCA 2EMUA 4MV5A 1PJTA 2E4NA 2EJZA 3TIXB 2ELDA 2E8RA 3KEMA 2E8HA 3URKA 2EGBA 1WYZA 2EGSA 1WDEA 2YBQA 2P6DA 2PB6A 2PCMA 3UTDA 3UV7A 2E08A 2E17A 2EK4A 2E16A 2E4RA 3I4TA 3KEFA 2E7RA 2EH4A 1WNGA 2OWKA 2E8SA 2EEQA 2EK7A 2HUQA 2EHLA 2PCAA 3KWPA 2ED3A 4EB3A 2EGLA 4MV0A 2EL3A 3UV3A 2ZVBA 1VE2A 4E16A 2P2XA 2OWGA 1PJQA 3FQ6A 3NEIA 3F7TA 2EKAA 3LMMA 2PCIA 2EHCA
chains in the Genus database with same CATH topology
2E15A 1VCEA 2OWFA 2ED5A 2OWVA 2DV4A 3T0GA 2EJKA 1PJSA 2P6LA 2KYYA 3ND1A 3KELA 2DXWA 2PCHA 2PB5A 3NUTA 2DV5A 2EL0A 2HR8A 1V9AA 4MUYA 3T0FA 4N7BA 3ZGLA 4MUXA 2EK2A 2EH2A 2P5FA 3UWMA 2E0NA 1VHVA 2QBUA 2P6IA 2DXVA 2HUTA 2DSHA 2P5CA 2EL2A 2EL1A 2YBOA 3ZGNA 4H4CA 3SZOA 3KE8A 4H4EA 2HUVA 2NPNA 2DXXA 2BB3A 3KE9A 2E8QA 3SZUA 2Z6RA 3FFYA 3NDCA 2E0KA 2P9DA 1VA0A 2EJJA 2OWUA 2PB4A 5HW4A 2EMRA 1S4DA 3UTCA 3DNFA 2DV7A 3HH1A 1CBFA 2HUXA 2E07A 2DSGA 2DSIA 2ENIA 2DV3A 2EH5A 2EN5A 2PCGA 4H4DA 2CBFA 2EK3A 2P6KA 3SZLA 2DEKA 2ELEA 2PCKA 3UV6A 2ZVCA 2EMUA 4MV5A 1PJTA 2E4NA 2EJZA 3TIXB 2ELDA 2E8RA 3KEMA 2E8HA 3URKA 2EGBA 1WYZA 2EGSA 1WDEA 2YBQA 2P6DA 2PB6A 2PCMA 3UTDA 3UV7A 2E08A 2E17A 2EK4A 2E16A 2E4RA 3I4TA 3KEFA 2E7RA 2EH4A 1WNGA 2OWKA 2E8SA 2EEQA 2EK7A 2HUQA 2EHLA 2PCAA 3KWPA 2ED3A 4EB3A 2EGLA 4MV0A 2EL3A 3UV3A 2ZVBA 1VE2A 4E16A 2P2XA 2OWGA 1PJQA 3FQ6A 3NEIA 3F7TA 2EKAA 3LMMA 2PCIA 2EHCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E15 A;  1VCE A;  2OWF A;  2ED5 A;  2OWV A;  2DV4 A;  2EJK A;  1PJS A;  2P6L A;  3ND1 A;  2DXW A;  2PCH A;  2PB5 A;  3NUT A;  2DV5 A;  2EL0 A;  2HR8 A;  1V9A A;  2EK2 A;  2EH2 A;  2P5F A;  2E0N A;  1VHV A;  2QBU A;  2P6I A;  2DXV A;  2HUT A;  2DSH A;  2P5C A;  2EL2 A;  2EL1 A;  2YBO A;  2HUV A;  2NPN A;  2DXX A;  2BB3 A;  2E8Q A;  2Z6R A;  3FFY A;  3NDC A;  2E0K A;  2P9D A;  1VA0 A;  2EJJ A;  2OWU A;  2PB4 A;  5HW4 A;  2EMR A;  1S4D A;  2DV7 A;  3HH1 A;  1CBF A;  2HUX A;  2E07 A;  2DSG A;  2DSI A;  2ENI A;  2DV3 A;  2EH5 A;  2EN5 A;  2PCG A;  2CBF A;  2EK3 A;  2P6K A;  2DEK A;  2ELE A;  2PCK A;  2ZVC A;  2EMU A;  1PJT A;  2E4N A;  2EJZ A;  2ELD A;  2E8R A;  2E8H A;  2EGB A;  1WYZ A;  2EGS A;  1WDE A;  2YBQ A;  2P6D A;  2PB6 A;  2PCM A;  2E08 A;  2E17 A;  2EK4 A;  2E16 A;  2E4R A;  3I4T A;  2E7R A;  2EH4 A;  1WNG A;  2OWK A;  2E8S A;  2EEQ A;  2EK7 A;  2HUQ A;  2EHL A;  2PCA A;  3KWP A;  2ED3 A;  2EGL A;  2EL3 A;  2ZVB A;  1VE2 A;  4E16 A;  2P2X A;  2OWG A;  1PJQ A;  3FQ6 A;  3NEI A;  2EKA A;  2PCI A;  2EHC A; 
#chains in the Genus database with same CATH topology
 2E15 A;  1VCE A;  2OWF A;  2ED5 A;  2OWV A;  2DV4 A;  3T0G A;  2EJK A;  1PJS A;  2P6L A;  2KYY A;  3ND1 A;  3KEL A;  2DXW A;  2PCH A;  2PB5 A;  3NUT A;  2DV5 A;  2EL0 A;  2HR8 A;  1V9A A;  4MUY A;  3T0F A;  4N7B A;  3ZGL A;  4MUX A;  2EK2 A;  2EH2 A;  2P5F A;  3UWM A;  2E0N A;  1VHV A;  2QBU A;  2P6I A;  2DXV A;  2HUT A;  2DSH A;  2P5C A;  2EL2 A;  2EL1 A;  2YBO A;  3ZGN A;  4H4C A;  3SZO A;  3KE8 A;  4H4E A;  2HUV A;  2NPN A;  2DXX A;  2BB3 A;  3KE9 A;  2E8Q A;  3SZU A;  2Z6R A;  3FFY A;  3NDC A;  2E0K A;  2P9D A;  1VA0 A;  2EJJ A;  2OWU A;  2PB4 A;  5HW4 A;  2EMR A;  1S4D A;  3UTC A;  3DNF A;  2DV7 A;  3HH1 A;  1CBF A;  2HUX A;  2E07 A;  2DSG A;  2DSI A;  2ENI A;  2DV3 A;  2EH5 A;  2EN5 A;  2PCG A;  4H4D A;  2CBF A;  2EK3 A;  2P6K A;  3SZL A;  2DEK A;  2ELE A;  2PCK A;  3UV6 A;  2ZVC A;  2EMU A;  4MV5 A;  1PJT A;  2E4N A;  2EJZ A;  3TIX B;  2ELD A;  2E8R A;  3KEM A;  2E8H A;  3URK A;  2EGB A;  1WYZ A;  2EGS A;  1WDE A;  2YBQ A;  2P6D A;  2PB6 A;  2PCM A;  3UTD A;  3UV7 A;  2E08 A;  2E17 A;  2EK4 A;  2E16 A;  2E4R A;  3I4T A;  3KEF A;  2E7R A;  2EH4 A;  1WNG A;  2OWK A;  2E8S A;  2EEQ A;  2EK7 A;  2HUQ A;  2EHL A;  2PCA A;  3KWP A;  2ED3 A;  4EB3 A;  2EGL A;  4MV0 A;  2EL3 A;  3UV3 A;  2ZVB A;  1VE2 A;  4E16 A;  2P2X A;  2OWG A;  1PJQ A;  3FQ6 A;  3NEI A;  3F7T A;  2EKA A;  3LMM A;  2PCI A;  2EHC A; 
#chains in the Genus database with same CATH homology
 2E15 A;  1VCE A;  2OWF A;  2ED5 A;  2OWV A;  2DV4 A;  3T0G A;  2EJK A;  1PJS A;  2P6L A;  2KYY A;  3ND1 A;  3KEL A;  2DXW A;  2PCH A;  2PB5 A;  3NUT A;  2DV5 A;  2EL0 A;  2HR8 A;  1V9A A;  4MUY A;  3T0F A;  4N7B A;  3ZGL A;  4MUX A;  2EK2 A;  2EH2 A;  2P5F A;  3UWM A;  2E0N A;  1VHV A;  2QBU A;  2P6I A;  2DXV A;  2HUT A;  2DSH A;  2P5C A;  2EL2 A;  2EL1 A;  2YBO A;  3ZGN A;  4H4C A;  3SZO A;  3KE8 A;  4H4E A;  2HUV A;  2NPN A;  2DXX A;  2BB3 A;  3KE9 A;  2E8Q A;  3SZU A;  2Z6R A;  3FFY A;  3NDC A;  2E0K A;  2P9D A;  1VA0 A;  2EJJ A;  2OWU A;  2PB4 A;  5HW4 A;  2EMR A;  1S4D A;  3UTC A;  3DNF A;  2DV7 A;  3HH1 A;  1CBF A;  2HUX A;  2E07 A;  2DSG A;  2DSI A;  2ENI A;  2DV3 A;  2EH5 A;  2EN5 A;  2PCG A;  4H4D A;  2CBF A;  2EK3 A;  2P6K A;  3SZL A;  2DEK A;  2ELE A;  2PCK A;  3UV6 A;  2ZVC A;  2EMU A;  4MV5 A;  1PJT A;  2E4N A;  2EJZ A;  3TIX B;  2ELD A;  2E8R A;  3KEM A;  2E8H A;  3URK A;  2EGB A;  1WYZ A;  2EGS A;  1WDE A;  2YBQ A;  2P6D A;  2PB6 A;  2PCM A;  3UTD A;  3UV7 A;  2E08 A;  2E17 A;  2EK4 A;  2E16 A;  2E4R A;  3I4T A;  3KEF A;  2E7R A;  2EH4 A;  1WNG A;  2OWK A;  2E8S A;  2EEQ A;  2EK7 A;  2HUQ A;  2EHL A;  2PCA A;  3KWP A;  2ED3 A;  4EB3 A;  2EGL A;  4MV0 A;  2EL3 A;  3UV3 A;  2ZVB A;  1VE2 A;  4E16 A;  2P2X A;  2OWG A;  1PJQ A;  3FQ6 A;  3NEI A;  3F7T A;  2EKA A;  3LMM A;  2PCI A;  2EHC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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