2PBQA

Crystal structure of molybdenum cofactor biosynthesis (aq_061) from aquifex aeolicus vf5
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
174
structure length
174
Chain Sequence
KAVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEVEYRVIPDERDLIEKTLIELADEKGCSLILTTGGTGPAPRDVTPEATEAVCEKMLPGFGELMRQVSLKQVPTAILSRQTAGIRGSCLIVNLPGKPQSIKVCLDAVMPAIPYCIDLIGGAYIDTDPNKVKAFRPKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Molybdenum cofactor biosynthesis MOG
publication title Crystal structure of molybdenum cofactor biosynthesis (aq_061) from aquifex aeolicus VF5
rcsb
source organism Aquifex aeolicus
total genus 58
structure length 174
sequence length 174
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2007-03-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00994 MoCF_biosynth Probable molybdopterin binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.980.10 Alpha Beta 3-Layer(aba) Sandwich Molybdenum Cofactor Biosythetic Enzyme; Chain A MoaB/Mog-like domain 2pbqA00
1JLJA 2NROA 4XCWA 2NQMA 4NWOA 1O8NA 4PD1A 1O8QA 5ERQA 3MCHA 1FC5A 2FTSA 4TK4A 2NQRA 2PBQA 2NQNA 2FU3A 1O8OA 3TCRA 1UZ5A 1WU2A 1G8LA 4U91A 1G8RA 1Y5EA 4LHBA 1DI7A 1T3EA 2NRSA 2NRPA 3MCIA 5ERTA 2G4RA 3KBQA 4TWGA 4U90A 5ERUA 1EAVA 5G2RA 3RFQA 2NQQA 3MCJA 1UUXA 1DI6A 2NQSA 5G2SA 2IS8A 5ERRA 4CT9A 2NQVA 2QQ1A 1IHCA 2F7WA 2NQUA 1MKZA 2NQKA 5ERSA 4UUXA 5ERVA 3K6AA 4CTAA 4UUWA 4TK3A 3IWTA 1XI8A 4UOCA 4CT8A 4PD0A 1UUYA 2F7YA 3OI9A 4TK1A 4CTAB 1R2KA 2G2CA 3PZYA
chains in the Genus database with same CATH superfamily
1JLJA 1O8NA 1FC5A 3TCRA 1UZ5A 1WU2A 1G8LA 4TWGA 4U90A 4CTAB 1UUXA 5G2SA 2F7WA 2NQKA 5ERSA 1YZYA 4TK3A 1XI8A 4PD0A 4XCWA 2FTSA 4U91A 1Y5EA 1T3EA 3DQQA 3MCIA 3KBQA 5G2RA 2NQSA 4CT9A 2NQVA 2QQ1A 4UUXA 3IWTA 3OI9A 2NROA 4NWOA 3MCHA 4TK4A 2NQRA 2PBQA 2FU3A 1O8OA 1G8RA 2NRSA 5ERUA 1EAVA 2NQQA 3MCJA 5ERRA 1MKZA 5ERVA 3K6AA 4CTAA 4CT8A 1UUYA 2F7YA 4TK1A 3PZYA 2NQMA 4PD1A 5ERQA 1O8QA 2NQNA 4LHBA 1DI7A 2NRPA 5ERTA 2G4RA 3RFQA 1DI6A 2IS8A 1IHCA 2NQUA 5DMHA 4UUWA 4UOCA 1R2KA 2G2CA
chains in the Genus database with same CATH topology
1JLJA 2NROA 4XCWA 2NQMA 4NWOA 1O8NA 4PD1A 1O8QA 5ERQA 3MCHA 1FC5A 2FTSA 4TK4A 2NQRA 2PBQA 2NQNA 2FU3A 1O8OA 3TCRA 1UZ5A 1WU2A 1G8LA 4U91A 1G8RA 1Y5EA 4LHBA 1DI7A 1T3EA 2NRSA 2NRPA 3MCIA 5ERTA 2G4RA 3KBQA 4TWGA 4U90A 5ERUA 1EAVA 5G2RA 3RFQA 2NQQA 3MCJA 1UUXA 1DI6A 2NQSA 5G2SA 2IS8A 5ERRA 4CT9A 2NQVA 2QQ1A 1IHCA 2F7WA 2NQUA 1MKZA 2NQKA 5ERSA 4UUXA 5ERVA 3K6AA 4CTAA 4UUWA 4TK3A 3IWTA 1XI8A 4UOCA 4CT8A 4PD0A 1UUYA 2F7YA 3OI9A 4TK1A 4CTAB 1R2KA 2G2CA 3PZYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JLJ A;  2NRO A;  4XCW A;  2NQM A;  4NWO A;  1O8N A;  4PD1 A;  1O8Q A;  5ERQ A;  3MCH A;  1FC5 A;  2FTS A;  4TK4 A;  2NQR A;  2PBQ A;  2NQN A;  2FU3 A;  1O8O A;  3TCR A;  1UZ5 A;  1WU2 A;  1G8L A;  4U91 A;  1G8R A;  1Y5E A;  4LHB A;  1DI7 A;  1T3E A;  2NRS A;  2NRP A;  3MCI A;  5ERT A;  2G4R A;  3KBQ A;  4TWG A;  4U90 A;  5ERU A;  1EAV A;  5G2R A;  3RFQ A;  2NQQ A;  3MCJ A;  1UUX A;  1DI6 A;  2NQS A;  5G2S A;  2IS8 A;  5ERR A;  4CT9 A;  2NQV A;  2QQ1 A;  1IHC A;  2F7W A;  2NQU A;  1MKZ A;  2NQK A;  5ERS A;  4UUX A;  5ERV A;  3K6A A;  4CTA A;  4UUW A;  4TK3 A;  3IWT A;  1XI8 A;  4UOC A;  4CT8 A;  4PD0 A;  1UUY A;  2F7Y A;  3OI9 A;  4TK1 A;  4CTA B;  1R2K A;  2G2C A;  3PZY A; 
#chains in the Genus database with same CATH topology
 1JLJ A;  1O8N A;  1FC5 A;  3TCR A;  1UZ5 A;  1WU2 A;  1G8L A;  4TWG A;  4U90 A;  4CTA B;  1UUX A;  5G2S A;  2F7W A;  2NQK A;  5ERS A;  1YZY A;  4TK3 A;  1XI8 A;  4PD0 A;  4XCW A;  2FTS A;  4U91 A;  1Y5E A;  1T3E A;  3DQQ A;  3MCI A;  3KBQ A;  5G2R A;  2NQS A;  4CT9 A;  2NQV A;  2QQ1 A;  4UUX A;  3IWT A;  3OI9 A;  2NRO A;  4NWO A;  3MCH A;  4TK4 A;  2NQR A;  2PBQ A;  2FU3 A;  1O8O A;  1G8R A;  2NRS A;  5ERU A;  1EAV A;  2NQQ A;  3MCJ A;  5ERR A;  1MKZ A;  5ERV A;  3K6A A;  4CTA A;  4CT8 A;  1UUY A;  2F7Y A;  4TK1 A;  3PZY A;  2NQM A;  4PD1 A;  5ERQ A;  1O8Q A;  2NQN A;  4LHB A;  1DI7 A;  2NRP A;  5ERT A;  2G4R A;  3RFQ A;  1DI6 A;  2IS8 A;  1IHC A;  2NQU A;  5DMH A;  4UUW A;  4UOC A;  1R2K A;  2G2C A; 
#chains in the Genus database with same CATH homology
 1JLJ A;  2NRO A;  4XCW A;  2NQM A;  4NWO A;  1O8N A;  4PD1 A;  1O8Q A;  5ERQ A;  3MCH A;  1FC5 A;  2FTS A;  4TK4 A;  2NQR A;  2PBQ A;  2NQN A;  2FU3 A;  1O8O A;  3TCR A;  1UZ5 A;  1WU2 A;  1G8L A;  4U91 A;  1G8R A;  1Y5E A;  4LHB A;  1DI7 A;  1T3E A;  2NRS A;  2NRP A;  3MCI A;  5ERT A;  2G4R A;  3KBQ A;  4TWG A;  4U90 A;  5ERU A;  1EAV A;  5G2R A;  3RFQ A;  2NQQ A;  3MCJ A;  1UUX A;  1DI6 A;  2NQS A;  5G2S A;  2IS8 A;  5ERR A;  4CT9 A;  2NQV A;  2QQ1 A;  1IHC A;  2F7W A;  2NQU A;  1MKZ A;  2NQK A;  5ERS A;  4UUX A;  5ERV A;  3K6A A;  4CTA A;  4UUW A;  4TK3 A;  3IWT A;  1XI8 A;  4UOC A;  4CT8 A;  4PD0 A;  1UUY A;  2F7Y A;  3OI9 A;  4TK1 A;  4CTA B;  1R2K A;  2G2C A;  3PZY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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