2PCAA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 81
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
81
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFMTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Probable diphthine synthase
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
total genus 81
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2pcaA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2pcaA01
2DV3A 3ND1A 2P6KA 2PB6A 4E16A 2DEKA 2OWFA 2EHCA 2EGLA 2EK2A 2E8SA 2E15A 2ED3A 2YBQA 2EMUA 2EL2A 2DSIA 2YBOA 1VCEA 2E17A 2EH2A 2PB5A 2PCGA 2DXVA 2EHLA 2DSHA 2ZVBA 2HUQA 2EN5A 3HH1A 2E08A 2E8HA 2E07A 2DXXA 2EH4A 2E0KA 2E8QA 2QBUA 3NEIA 2E4NA 2EK3A 2OWGA 2PCAA 2EGSA 2PCIA 2ZVCA 3KWPA 2P5CA 2EKAA 2NPNA 2PCHA 2E7RA 2EK4A 2HUTA 5HW4A 1VA0A 2OWKA 2ELEA 2E16A 2ENIA 1VHVA 1VE2A 3FFYA 2HUXA 1S4DA 2PB4A 2EJKA 2OWUA 2EK7A 2P9DA 3NUTA 1PJTA 2EL1A 2CBFA 2DSGA 2DXWA 2P6DA 2EJZA 2ED5A 2OWVA 2P2XA 2P6LA 2HUVA 2P5FA 3FQ6A 2BB3A 2EL0A 3I4TA 2P6IA 1WNGA 2ELDA 2Z6RA 2DV5A 1WYZA 2HR8A 1V9AA 2PCMA 2E0NA 2EEQA 1WDEA 2E8RA 2PCKA 1PJSA 2DV7A 1PJQA 2EGBA 2DV4A 2EL3A 2EMRA 2EJJA 1CBFA 2E4RA 2EH5A 3NDCA
chains in the Genus database with same CATH superfamily
4MV5A 2DV3A 3UV3A 3ND1A 2P6KA 2PB6A 4E16A 2DEKA 2OWFA 2EHCA 3ZGLA 2EGLA 2EK2A 2E8SA 3UTCA 2E15A 2ED3A 2YBQA 2EMUA 2EL2A 2DSIA 2YBOA 3UV6A 1VCEA 2E17A 2EH2A 2PB5A 4MV0A 2PCGA 2DXVA 2EHLA 2DSHA 2ZVBA 3ZGNA 2HUQA 2EN5A 3HH1A 2E08A 2E8HA 3SZLA 2E07A 2DXXA 3DNFA 2EH4A 2E0KA 2E8QA 2QBUA 3NEIA 2E4NA 2EK3A 3SZOA 2OWGA 2PCAA 2EGSA 2PCIA 2ZVCA 3KWPA 2P5CA 2EKAA 2NPNA 2PCHA 3KEFA 3KEMA 2E7RA 4MUYA 2EK4A 2HUTA 5HW4A 3UTDA 1VA0A 3UWMA 3KE9A 2OWKA 2ELEA 2E16A 2ENIA 4H4CA 1VHVA 4MUXA 1VE2A 3LMMA 3URKA 3FFYA 2HUXA 1S4DA 2PB4A 2EJKA 2OWUA 2EK7A 2P9DA 4EB3A 3NUTA 1PJTA 2EL1A 2CBFA 4N7BA 3KE8A 2DSGA 2DXWA 2P6DA 2EJZA 4H4DA 2ED5A 2OWVA 2P2XA 2P6LA 2HUVA 2P5FA 3FQ6A 3F7TA 2BB3A 2EL0A 3I4TA 2P6IA 1WNGA 2ELDA 2Z6RA 3SZUA 2DV5A 3T0GA 1WYZA 2HR8A 1V9AA 2PCMA 2E0NA 2EEQA 1WDEA 2E8RA 2PCKA 1PJSA 2DV7A 2KYYA 1PJQA 2EGBA 2DV4A 2EL3A 2EMRA 2EJJA 3T0FA 3TIXB 3UV7A 1CBFA 3KELA 2E4RA 4H4EA 2EH5A 3NDCA
chains in the Genus database with same CATH topology
4MV5A 2DV3A 3UV3A 3ND1A 2P6KA 2PB6A 4E16A 2DEKA 2OWFA 2EHCA 3ZGLA 2EGLA 2EK2A 2E8SA 3UTCA 2E15A 2ED3A 2YBQA 2EMUA 2EL2A 2DSIA 2YBOA 3UV6A 1VCEA 2E17A 2EH2A 2PB5A 4MV0A 2PCGA 2DXVA 2EHLA 2DSHA 2ZVBA 3ZGNA 2HUQA 2EN5A 3HH1A 2E08A 2E8HA 3SZLA 2E07A 2DXXA 3DNFA 2EH4A 2E0KA 2E8QA 2QBUA 3NEIA 2E4NA 2EK3A 3SZOA 2OWGA 2PCAA 2EGSA 2PCIA 2ZVCA 3KWPA 2P5CA 2EKAA 2NPNA 2PCHA 3KEFA 3KEMA 2E7RA 4MUYA 2EK4A 2HUTA 5HW4A 3UTDA 1VA0A 3UWMA 3KE9A 2OWKA 2ELEA 2E16A 2ENIA 4H4CA 1VHVA 4MUXA 1VE2A 3LMMA 3URKA 3FFYA 2HUXA 1S4DA 2PB4A 2EJKA 2OWUA 2EK7A 2P9DA 4EB3A 3NUTA 1PJTA 2EL1A 2CBFA 4N7BA 3KE8A 2DSGA 2DXWA 2P6DA 2EJZA 4H4DA 2ED5A 2OWVA 2P2XA 2P6LA 2HUVA 2P5FA 3FQ6A 3F7TA 2BB3A 2EL0A 3I4TA 2P6IA 1WNGA 2ELDA 2Z6RA 3SZUA 2DV5A 3T0GA 1WYZA 2HR8A 1V9AA 2PCMA 2E0NA 2EEQA 1WDEA 2E8RA 2PCKA 1PJSA 2DV7A 2KYYA 1PJQA 2EGBA 2DV4A 2EL3A 2EMRA 2EJJA 3T0FA 3TIXB 3UV7A 1CBFA 3KELA 2E4RA 4H4EA 2EH5A 3NDCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DV3 A;  3ND1 A;  2P6K A;  2PB6 A;  4E16 A;  2DEK A;  2OWF A;  2EHC A;  2EGL A;  2EK2 A;  2E8S A;  2E15 A;  2ED3 A;  2YBQ A;  2EMU A;  2EL2 A;  2DSI A;  2YBO A;  1VCE A;  2E17 A;  2EH2 A;  2PB5 A;  2PCG A;  2DXV A;  2EHL A;  2DSH A;  2ZVB A;  2HUQ A;  2EN5 A;  3HH1 A;  2E08 A;  2E8H A;  2E07 A;  2DXX A;  2EH4 A;  2E0K A;  2E8Q A;  2QBU A;  3NEI A;  2E4N A;  2EK3 A;  2OWG A;  2PCA A;  2EGS A;  2PCI A;  2ZVC A;  3KWP A;  2P5C A;  2EKA A;  2NPN A;  2PCH A;  2E7R A;  2EK4 A;  2HUT A;  5HW4 A;  1VA0 A;  2OWK A;  2ELE A;  2E16 A;  2ENI A;  1VHV A;  1VE2 A;  3FFY A;  2HUX A;  1S4D A;  2PB4 A;  2EJK A;  2OWU A;  2EK7 A;  2P9D A;  3NUT A;  1PJT A;  2EL1 A;  2CBF A;  2DSG A;  2DXW A;  2P6D A;  2EJZ A;  2ED5 A;  2OWV A;  2P2X A;  2P6L A;  2HUV A;  2P5F A;  3FQ6 A;  2BB3 A;  2EL0 A;  3I4T A;  2P6I A;  1WNG A;  2ELD A;  2Z6R A;  2DV5 A;  1WYZ A;  2HR8 A;  1V9A A;  2PCM A;  2E0N A;  2EEQ A;  1WDE A;  2E8R A;  2PCK A;  1PJS A;  2DV7 A;  1PJQ A;  2EGB A;  2DV4 A;  2EL3 A;  2EMR A;  2EJJ A;  1CBF A;  2E4R A;  2EH5 A;  3NDC A; 
#chains in the Genus database with same CATH topology
 4MV5 A;  2DV3 A;  3UV3 A;  3ND1 A;  2P6K A;  2PB6 A;  4E16 A;  2DEK A;  2OWF A;  2EHC A;  3ZGL A;  2EGL A;  2EK2 A;  2E8S A;  3UTC A;  2E15 A;  2ED3 A;  2YBQ A;  2EMU A;  2EL2 A;  2DSI A;  2YBO A;  3UV6 A;  1VCE A;  2E17 A;  2EH2 A;  2PB5 A;  4MV0 A;  2PCG A;  2DXV A;  2EHL A;  2DSH A;  2ZVB A;  3ZGN A;  2HUQ A;  2EN5 A;  3HH1 A;  2E08 A;  2E8H A;  3SZL A;  2E07 A;  2DXX A;  3DNF A;  2EH4 A;  2E0K A;  2E8Q A;  2QBU A;  3NEI A;  2E4N A;  2EK3 A;  3SZO A;  2OWG A;  2PCA A;  2EGS A;  2PCI A;  2ZVC A;  3KWP A;  2P5C A;  2EKA A;  2NPN A;  2PCH A;  3KEF A;  3KEM A;  2E7R A;  4MUY A;  2EK4 A;  2HUT A;  5HW4 A;  3UTD A;  1VA0 A;  3UWM A;  3KE9 A;  2OWK A;  2ELE A;  2E16 A;  2ENI A;  4H4C A;  1VHV A;  4MUX A;  1VE2 A;  3LMM A;  3URK A;  3FFY A;  2HUX A;  1S4D A;  2PB4 A;  2EJK A;  2OWU A;  2EK7 A;  2P9D A;  4EB3 A;  3NUT A;  1PJT A;  2EL1 A;  2CBF A;  4N7B A;  3KE8 A;  2DSG A;  2DXW A;  2P6D A;  2EJZ A;  4H4D A;  2ED5 A;  2OWV A;  2P2X A;  2P6L A;  2HUV A;  2P5F A;  3FQ6 A;  3F7T A;  2BB3 A;  2EL0 A;  3I4T A;  2P6I A;  1WNG A;  2ELD A;  2Z6R A;  3SZU A;  2DV5 A;  3T0G A;  1WYZ A;  2HR8 A;  1V9A A;  2PCM A;  2E0N A;  2EEQ A;  1WDE A;  2E8R A;  2PCK A;  1PJS A;  2DV7 A;  2KYY A;  1PJQ A;  2EGB A;  2DV4 A;  2EL3 A;  2EMR A;  2EJJ A;  3T0F A;  3TIX B;  3UV7 A;  1CBF A;  3KEL A;  2E4R A;  4H4E A;  2EH5 A;  3NDC A; 
#chains in the Genus database with same CATH homology
 4MV5 A;  2DV3 A;  3UV3 A;  3ND1 A;  2P6K A;  2PB6 A;  4E16 A;  2DEK A;  2OWF A;  2EHC A;  3ZGL A;  2EGL A;  2EK2 A;  2E8S A;  3UTC A;  2E15 A;  2ED3 A;  2YBQ A;  2EMU A;  2EL2 A;  2DSI A;  2YBO A;  3UV6 A;  1VCE A;  2E17 A;  2EH2 A;  2PB5 A;  4MV0 A;  2PCG A;  2DXV A;  2EHL A;  2DSH A;  2ZVB A;  3ZGN A;  2HUQ A;  2EN5 A;  3HH1 A;  2E08 A;  2E8H A;  3SZL A;  2E07 A;  2DXX A;  3DNF A;  2EH4 A;  2E0K A;  2E8Q A;  2QBU A;  3NEI A;  2E4N A;  2EK3 A;  3SZO A;  2OWG A;  2PCA A;  2EGS A;  2PCI A;  2ZVC A;  3KWP A;  2P5C A;  2EKA A;  2NPN A;  2PCH A;  3KEF A;  3KEM A;  2E7R A;  4MUY A;  2EK4 A;  2HUT A;  5HW4 A;  3UTD A;  1VA0 A;  3UWM A;  3KE9 A;  2OWK A;  2ELE A;  2E16 A;  2ENI A;  4H4C A;  1VHV A;  4MUX A;  1VE2 A;  3LMM A;  3URK A;  3FFY A;  2HUX A;  1S4D A;  2PB4 A;  2EJK A;  2OWU A;  2EK7 A;  2P9D A;  4EB3 A;  3NUT A;  1PJT A;  2EL1 A;  2CBF A;  4N7B A;  3KE8 A;  2DSG A;  2DXW A;  2P6D A;  2EJZ A;  4H4D A;  2ED5 A;  2OWV A;  2P2X A;  2P6L A;  2HUV A;  2P5F A;  3FQ6 A;  3F7T A;  2BB3 A;  2EL0 A;  3I4T A;  2P6I A;  1WNG A;  2ELD A;  2Z6R A;  3SZU A;  2DV5 A;  3T0G A;  1WYZ A;  2HR8 A;  1V9A A;  2PCM A;  2E0N A;  2EEQ A;  1WDE A;  2E8R A;  2PCK A;  1PJS A;  2DV7 A;  2KYY A;  1PJQ A;  2EGB A;  2DV4 A;  2EL3 A;  2EMR A;  2EJJ A;  3T0F A;  3TIX B;  3UV7 A;  1CBF A;  3KEL A;  2E4R A;  4H4E A;  2EH5 A;  3NDC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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