2PCGA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSMNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Probable diphthine synthase
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
total genus 86
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2pcgA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2pcgA01
2DV4A 2E4NA 2EL3A 2E4RA 2PB5A 2PCMA 3KWPA 2OWUA 2P6KA 1S4DA 2DSIA 2EJZA 1WNGA 2PCHA 2EH2A 2E8RA 1V9AA 2E0KA 2CBFA 2EHLA 2EMUA 3NEIA 4E16A 3ND1A 2EEQA 2ZVCA 1WYZA 2NPNA 2P5CA 2EH5A 2HUTA 2P5FA 2DEKA 2YBQA 2DSGA 2PCGA 2HUXA 2YBOA 2EMRA 2EN5A 2ED3A 2BB3A 2EHCA 2EK7A 2PCIA 3I4TA 2DV7A 3HH1A 1PJTA 2EGSA 2E0NA 2P6DA 2E07A 2ED5A 3NDCA 2EJKA 2E8QA 2ZVBA 2E7RA 2E08A 2DXXA 2HR8A 2EK2A 2P9DA 3FQ6A 1VHVA 2EK4A 3NUTA 2OWGA 2OWKA 1VE2A 2E8SA 3FFYA 2Z6RA 2PB6A 1CBFA 2QBUA 2EJJA 2DXVA 2DV3A 2E15A 2P6LA 2E8HA 2OWVA 2DSHA 2P6IA 2HUVA 1PJSA 1VA0A 2E16A 2DXWA 2ELDA 1VCEA 2EH4A 2EK3A 2EL1A 2ENIA 1WDEA 2ELEA 1PJQA 2PB4A 2DV5A 2PCAA 2EGBA 2EL2A 5HW4A 2HUQA 2E17A 2PCKA 2OWFA 2EKAA 2EGLA 2P2XA 2EL0A
chains in the Genus database with same CATH superfamily
3UV3A 2DV4A 2E4NA 2EL3A 2E4RA 2PB5A 2PCMA 3KWPA 2OWUA 3KEFA 2P6KA 1S4DA 2DSIA 2EJZA 1WNGA 2PCHA 3SZOA 3UV6A 3URKA 2EH2A 3KELA 3UV7A 2E8RA 1V9AA 2E0KA 2CBFA 2EHLA 2EMUA 3NEIA 4E16A 3ND1A 2EEQA 2ZVCA 1WYZA 2NPNA 2P5CA 3ZGLA 2EH5A 2HUTA 2P5FA 2DEKA 2YBQA 4MV5A 2DSGA 2PCGA 2HUXA 3T0FA 3UTCA 2YBOA 2EMRA 2EN5A 2ED3A 2BB3A 2EHCA 2EK7A 2PCIA 4H4DA 3DNFA 3I4TA 2DV7A 3HH1A 1PJTA 2EGSA 2E0NA 2P6DA 2E07A 2ED5A 3NDCA 3KE8A 2EJKA 3LMMA 2E8QA 2ZVBA 2E7RA 4H4CA 4N7BA 2E08A 2DXXA 4MV0A 2HR8A 2EK2A 2P9DA 3UTDA 3FQ6A 1VHVA 2EK4A 3NUTA 3KE9A 2KYYA 2OWGA 2OWKA 1VE2A 2E8SA 3FFYA 4EB3A 2Z6RA 2PB6A 1CBFA 3KEMA 2QBUA 2EJJA 2DXVA 2DV3A 3SZUA 3TIXB 2E15A 2P6LA 2E8HA 2OWVA 2DSHA 2P6IA 3F7TA 4MUYA 4MUXA 3UWMA 2HUVA 1PJSA 1VA0A 2E16A 2DXWA 2ELDA 1VCEA 2EH4A 2EK3A 2EL1A 3ZGNA 2ENIA 1WDEA 2ELEA 1PJQA 2PB4A 2DV5A 2PCAA 3T0GA 2EGBA 2EL2A 5HW4A 2HUQA 2E17A 2PCKA 2OWFA 4H4EA 2EKAA 2EGLA 3SZLA 2P2XA 2EL0A
chains in the Genus database with same CATH topology
3UV3A 2DV4A 2E4NA 2EL3A 2E4RA 2PB5A 2PCMA 3KWPA 2OWUA 3KEFA 2P6KA 1S4DA 2DSIA 2EJZA 1WNGA 2PCHA 3SZOA 3UV6A 3URKA 2EH2A 3KELA 3UV7A 2E8RA 1V9AA 2E0KA 2CBFA 2EHLA 2EMUA 3NEIA 4E16A 3ND1A 2EEQA 2ZVCA 1WYZA 2NPNA 2P5CA 3ZGLA 2EH5A 2HUTA 2P5FA 2DEKA 2YBQA 4MV5A 2DSGA 2PCGA 2HUXA 3T0FA 3UTCA 2YBOA 2EMRA 2EN5A 2ED3A 2BB3A 2EHCA 2EK7A 2PCIA 4H4DA 3DNFA 3I4TA 2DV7A 3HH1A 1PJTA 2EGSA 2E0NA 2P6DA 2E07A 2ED5A 3NDCA 3KE8A 2EJKA 3LMMA 2E8QA 2ZVBA 2E7RA 4H4CA 4N7BA 2E08A 2DXXA 4MV0A 2HR8A 2EK2A 2P9DA 3UTDA 3FQ6A 1VHVA 2EK4A 3NUTA 3KE9A 2KYYA 2OWGA 2OWKA 1VE2A 2E8SA 3FFYA 4EB3A 2Z6RA 2PB6A 1CBFA 3KEMA 2QBUA 2EJJA 2DXVA 2DV3A 3SZUA 3TIXB 2E15A 2P6LA 2E8HA 2OWVA 2DSHA 2P6IA 3F7TA 4MUYA 4MUXA 3UWMA 2HUVA 1PJSA 1VA0A 2E16A 2DXWA 2ELDA 1VCEA 2EH4A 2EK3A 2EL1A 3ZGNA 2ENIA 1WDEA 2ELEA 1PJQA 2PB4A 2DV5A 2PCAA 3T0GA 2EGBA 2EL2A 5HW4A 2HUQA 2E17A 2PCKA 2OWFA 4H4EA 2EKAA 2EGLA 3SZLA 2P2XA 2EL0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DV4 A;  2E4N A;  2EL3 A;  2E4R A;  2PB5 A;  2PCM A;  3KWP A;  2OWU A;  2P6K A;  1S4D A;  2DSI A;  2EJZ A;  1WNG A;  2PCH A;  2EH2 A;  2E8R A;  1V9A A;  2E0K A;  2CBF A;  2EHL A;  2EMU A;  3NEI A;  4E16 A;  3ND1 A;  2EEQ A;  2ZVC A;  1WYZ A;  2NPN A;  2P5C A;  2EH5 A;  2HUT A;  2P5F A;  2DEK A;  2YBQ A;  2DSG A;  2PCG A;  2HUX A;  2YBO A;  2EMR A;  2EN5 A;  2ED3 A;  2BB3 A;  2EHC A;  2EK7 A;  2PCI A;  3I4T A;  2DV7 A;  3HH1 A;  1PJT A;  2EGS A;  2E0N A;  2P6D A;  2E07 A;  2ED5 A;  3NDC A;  2EJK A;  2E8Q A;  2ZVB A;  2E7R A;  2E08 A;  2DXX A;  2HR8 A;  2EK2 A;  2P9D A;  3FQ6 A;  1VHV A;  2EK4 A;  3NUT A;  2OWG A;  2OWK A;  1VE2 A;  2E8S A;  3FFY A;  2Z6R A;  2PB6 A;  1CBF A;  2QBU A;  2EJJ A;  2DXV A;  2DV3 A;  2E15 A;  2P6L A;  2E8H A;  2OWV A;  2DSH A;  2P6I A;  2HUV A;  1PJS A;  1VA0 A;  2E16 A;  2DXW A;  2ELD A;  1VCE A;  2EH4 A;  2EK3 A;  2EL1 A;  2ENI A;  1WDE A;  2ELE A;  1PJQ A;  2PB4 A;  2DV5 A;  2PCA A;  2EGB A;  2EL2 A;  5HW4 A;  2HUQ A;  2E17 A;  2PCK A;  2OWF A;  2EKA A;  2EGL A;  2P2X A;  2EL0 A; 
#chains in the Genus database with same CATH topology
 3UV3 A;  2DV4 A;  2E4N A;  2EL3 A;  2E4R A;  2PB5 A;  2PCM A;  3KWP A;  2OWU A;  3KEF A;  2P6K A;  1S4D A;  2DSI A;  2EJZ A;  1WNG A;  2PCH A;  3SZO A;  3UV6 A;  3URK A;  2EH2 A;  3KEL A;  3UV7 A;  2E8R A;  1V9A A;  2E0K A;  2CBF A;  2EHL A;  2EMU A;  3NEI A;  4E16 A;  3ND1 A;  2EEQ A;  2ZVC A;  1WYZ A;  2NPN A;  2P5C A;  3ZGL A;  2EH5 A;  2HUT A;  2P5F A;  2DEK A;  2YBQ A;  4MV5 A;  2DSG A;  2PCG A;  2HUX A;  3T0F A;  3UTC A;  2YBO A;  2EMR A;  2EN5 A;  2ED3 A;  2BB3 A;  2EHC A;  2EK7 A;  2PCI A;  4H4D A;  3DNF A;  3I4T A;  2DV7 A;  3HH1 A;  1PJT A;  2EGS A;  2E0N A;  2P6D A;  2E07 A;  2ED5 A;  3NDC A;  3KE8 A;  2EJK A;  3LMM A;  2E8Q A;  2ZVB A;  2E7R A;  4H4C A;  4N7B A;  2E08 A;  2DXX A;  4MV0 A;  2HR8 A;  2EK2 A;  2P9D A;  3UTD A;  3FQ6 A;  1VHV A;  2EK4 A;  3NUT A;  3KE9 A;  2KYY A;  2OWG A;  2OWK A;  1VE2 A;  2E8S A;  3FFY A;  4EB3 A;  2Z6R A;  2PB6 A;  1CBF A;  3KEM A;  2QBU A;  2EJJ A;  2DXV A;  2DV3 A;  3SZU A;  3TIX B;  2E15 A;  2P6L A;  2E8H A;  2OWV A;  2DSH A;  2P6I A;  3F7T A;  4MUY A;  4MUX A;  3UWM A;  2HUV A;  1PJS A;  1VA0 A;  2E16 A;  2DXW A;  2ELD A;  1VCE A;  2EH4 A;  2EK3 A;  2EL1 A;  3ZGN A;  2ENI A;  1WDE A;  2ELE A;  1PJQ A;  2PB4 A;  2DV5 A;  2PCA A;  3T0G A;  2EGB A;  2EL2 A;  5HW4 A;  2HUQ A;  2E17 A;  2PCK A;  2OWF A;  4H4E A;  2EKA A;  2EGL A;  3SZL A;  2P2X A;  2EL0 A; 
#chains in the Genus database with same CATH homology
 3UV3 A;  2DV4 A;  2E4N A;  2EL3 A;  2E4R A;  2PB5 A;  2PCM A;  3KWP A;  2OWU A;  3KEF A;  2P6K A;  1S4D A;  2DSI A;  2EJZ A;  1WNG A;  2PCH A;  3SZO A;  3UV6 A;  3URK A;  2EH2 A;  3KEL A;  3UV7 A;  2E8R A;  1V9A A;  2E0K A;  2CBF A;  2EHL A;  2EMU A;  3NEI A;  4E16 A;  3ND1 A;  2EEQ A;  2ZVC A;  1WYZ A;  2NPN A;  2P5C A;  3ZGL A;  2EH5 A;  2HUT A;  2P5F A;  2DEK A;  2YBQ A;  4MV5 A;  2DSG A;  2PCG A;  2HUX A;  3T0F A;  3UTC A;  2YBO A;  2EMR A;  2EN5 A;  2ED3 A;  2BB3 A;  2EHC A;  2EK7 A;  2PCI A;  4H4D A;  3DNF A;  3I4T A;  2DV7 A;  3HH1 A;  1PJT A;  2EGS A;  2E0N A;  2P6D A;  2E07 A;  2ED5 A;  3NDC A;  3KE8 A;  2EJK A;  3LMM A;  2E8Q A;  2ZVB A;  2E7R A;  4H4C A;  4N7B A;  2E08 A;  2DXX A;  4MV0 A;  2HR8 A;  2EK2 A;  2P9D A;  3UTD A;  3FQ6 A;  1VHV A;  2EK4 A;  3NUT A;  3KE9 A;  2KYY A;  2OWG A;  2OWK A;  1VE2 A;  2E8S A;  3FFY A;  4EB3 A;  2Z6R A;  2PB6 A;  1CBF A;  3KEM A;  2QBU A;  2EJJ A;  2DXV A;  2DV3 A;  3SZU A;  3TIX B;  2E15 A;  2P6L A;  2E8H A;  2OWV A;  2DSH A;  2P6I A;  3F7T A;  4MUY A;  4MUX A;  3UWM A;  2HUV A;  1PJS A;  1VA0 A;  2E16 A;  2DXW A;  2ELD A;  1VCE A;  2EH4 A;  2EK3 A;  2EL1 A;  3ZGN A;  2ENI A;  1WDE A;  2ELE A;  1PJQ A;  2PB4 A;  2DV5 A;  2PCA A;  3T0G A;  2EGB A;  2EL2 A;  5HW4 A;  2HUQ A;  2E17 A;  2PCK A;  2OWF A;  4H4E A;  2EKA A;  2EGL A;  3SZL A;  2P2X A;  2EL0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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