2PCGA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSMNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Probable diphthine synthase
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 86
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2pcgA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2pcgA01
2DV3A 1PJSA 2E8RA 1VA0A 2PB6A 2DSGA 2PB5A 2EK3A 2EL2A 2ZVCA 2P6IA 2OWKA 5HW4A 2E15A 2ED3A 2PB4A 2ELEA 2HUVA 1PJQA 2EJJA 1WYZA 2DV7A 2OWGA 2P9DA 2DSHA 2Z6RA 2DXWA 3HH1A 2EN5A 2EH5A 2E4NA 2PCGA 3FFYA 2ED5A 2EHCA 2CBFA 2E8HA 2EKAA 1PJTA 2EK2A 2QBUA 3NUTA 2OWFA 2ELDA 2NPNA 2OWVA 3ND1A 1S4DA 2E0KA 2EJKA 4E16A 2BB3A 2EGLA 2EHLA 2EH4A 3I4TA 1CBFA 2P2XA 2PCHA 3FQ6A 2EL1A 2E16A 2EK7A 2P6DA 2EMUA 2PCAA 2E08A 3KWPA 2HR8A 1VCEA 2DXVA 2ENIA 2P5CA 2EGBA 2EH2A 2ZVBA 2P6KA 2DSIA 2PCKA 2P6LA 2PCMA 2EL0A 2OWUA 2E8QA 2HUQA 2E8SA 2DXXA 2EL3A 2HUXA 2E17A 2EEQA 2EJZA 3NDCA 1V9AA 2EGSA 2DV4A 2HUTA 2YBQA 2P5FA 2PCIA 2EK4A 3NEIA 2DV5A 1WNGA 1VHVA 2E4RA 2E7RA 2YBOA 1VE2A 2E07A 1WDEA 2EMRA 2E0NA 2DEKA
chains in the Genus database with same CATH superfamily
2DV3A 1PJSA 2E8RA 1VA0A 2PB6A 2DSGA 2PB5A 2EK3A 3ZGNA 2EL2A 3SZOA 2ZVCA 2P6IA 4H4EA 2OWKA 5HW4A 2E15A 2ED3A 2PB4A 3UTDA 2ELEA 2HUVA 3F7TA 1PJQA 2EJJA 4MUYA 1WYZA 2DV7A 4EB3A 2OWGA 2P9DA 4MV5A 4MV0A 2DSHA 4N7BA 2Z6RA 4MUXA 2DXWA 3HH1A 2EN5A 2EH5A 2E4NA 2PCGA 3FFYA 3URKA 2ED5A 2EHCA 2CBFA 2E8HA 2EKAA 3UWMA 1PJTA 2EK2A 2QBUA 3NUTA 2OWFA 2ELDA 2KYYA 2NPNA 2OWVA 3ND1A 1S4DA 2E0KA 2EJKA 4E16A 2BB3A 2EGLA 2EHLA 2EH4A 3KE9A 4H4CA 3I4TA 1CBFA 3T0FA 3T0GA 2P2XA 3SZLA 2PCHA 3FQ6A 2EL1A 3KELA 2E16A 2EK7A 3TIXB 2P6DA 2EMUA 2PCAA 2E08A 3KWPA 2HR8A 3LMMA 1VCEA 2DXVA 2ENIA 2P5CA 3KEMA 2EGBA 2EH2A 4H4DA 2ZVBA 2P6KA 2DSIA 2PCKA 2P6LA 2PCMA 3UV7A 2EL0A 2OWUA 2E8QA 2HUQA 3DNFA 3UV6A 2E8SA 2DXXA 2EL3A 2HUXA 3KE8A 3SZUA 2E17A 3ZGLA 2EEQA 2EJZA 3UTCA 3NDCA 1V9AA 2EGSA 2DV4A 2HUTA 2YBQA 3UV3A 2P5FA 2PCIA 2EK4A 3NEIA 2DV5A 1WNGA 1VHVA 2E4RA 2E7RA 2YBOA 1VE2A 2E07A 1WDEA 2EMRA 2E0NA 3KEFA 2DEKA
chains in the Genus database with same CATH topology
2DV3A 1PJSA 2E8RA 1VA0A 2PB6A 2DSGA 2PB5A 2EK3A 3ZGNA 2EL2A 3SZOA 2ZVCA 2P6IA 4H4EA 2OWKA 5HW4A 2E15A 2ED3A 2PB4A 3UTDA 2ELEA 2HUVA 3F7TA 1PJQA 2EJJA 4MUYA 1WYZA 2DV7A 4EB3A 2OWGA 2P9DA 4MV5A 4MV0A 2DSHA 4N7BA 2Z6RA 4MUXA 2DXWA 3HH1A 2EN5A 2EH5A 2E4NA 2PCGA 3FFYA 3URKA 2ED5A 2EHCA 2CBFA 2E8HA 2EKAA 3UWMA 1PJTA 2EK2A 2QBUA 3NUTA 2OWFA 2ELDA 2KYYA 2NPNA 2OWVA 3ND1A 1S4DA 2E0KA 2EJKA 4E16A 2BB3A 2EGLA 2EHLA 2EH4A 3KE9A 4H4CA 3I4TA 1CBFA 3T0FA 3T0GA 2P2XA 3SZLA 2PCHA 3FQ6A 2EL1A 3KELA 2E16A 2EK7A 3TIXB 2P6DA 2EMUA 2PCAA 2E08A 3KWPA 2HR8A 3LMMA 1VCEA 2DXVA 2ENIA 2P5CA 3KEMA 2EGBA 2EH2A 4H4DA 2ZVBA 2P6KA 2DSIA 2PCKA 2P6LA 2PCMA 3UV7A 2EL0A 2OWUA 2E8QA 2HUQA 3DNFA 3UV6A 2E8SA 2DXXA 2EL3A 2HUXA 3KE8A 3SZUA 2E17A 3ZGLA 2EEQA 2EJZA 3UTCA 3NDCA 1V9AA 2EGSA 2DV4A 2HUTA 2YBQA 3UV3A 2P5FA 2PCIA 2EK4A 3NEIA 2DV5A 1WNGA 1VHVA 2E4RA 2E7RA 2YBOA 1VE2A 2E07A 1WDEA 2EMRA 2E0NA 3KEFA 2DEKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DV3 A;  1PJS A;  2E8R A;  1VA0 A;  2PB6 A;  2DSG A;  2PB5 A;  2EK3 A;  2EL2 A;  2ZVC A;  2P6I A;  2OWK A;  5HW4 A;  2E15 A;  2ED3 A;  2PB4 A;  2ELE A;  2HUV A;  1PJQ A;  2EJJ A;  1WYZ A;  2DV7 A;  2OWG A;  2P9D A;  2DSH A;  2Z6R A;  2DXW A;  3HH1 A;  2EN5 A;  2EH5 A;  2E4N A;  2PCG A;  3FFY A;  2ED5 A;  2EHC A;  2CBF A;  2E8H A;  2EKA A;  1PJT A;  2EK2 A;  2QBU A;  3NUT A;  2OWF A;  2ELD A;  2NPN A;  2OWV A;  3ND1 A;  1S4D A;  2E0K A;  2EJK A;  4E16 A;  2BB3 A;  2EGL A;  2EHL A;  2EH4 A;  3I4T A;  1CBF A;  2P2X A;  2PCH A;  3FQ6 A;  2EL1 A;  2E16 A;  2EK7 A;  2P6D A;  2EMU A;  2PCA A;  2E08 A;  3KWP A;  2HR8 A;  1VCE A;  2DXV A;  2ENI A;  2P5C A;  2EGB A;  2EH2 A;  2ZVB A;  2P6K A;  2DSI A;  2PCK A;  2P6L A;  2PCM A;  2EL0 A;  2OWU A;  2E8Q A;  2HUQ A;  2E8S A;  2DXX A;  2EL3 A;  2HUX A;  2E17 A;  2EEQ A;  2EJZ A;  3NDC A;  1V9A A;  2EGS A;  2DV4 A;  2HUT A;  2YBQ A;  2P5F A;  2PCI A;  2EK4 A;  3NEI A;  2DV5 A;  1WNG A;  1VHV A;  2E4R A;  2E7R A;  2YBO A;  1VE2 A;  2E07 A;  1WDE A;  2EMR A;  2E0N A;  2DEK A; 
#chains in the Genus database with same CATH topology
 2DV3 A;  1PJS A;  2E8R A;  1VA0 A;  2PB6 A;  2DSG A;  2PB5 A;  2EK3 A;  3ZGN A;  2EL2 A;  3SZO A;  2ZVC A;  2P6I A;  4H4E A;  2OWK A;  5HW4 A;  2E15 A;  2ED3 A;  2PB4 A;  3UTD A;  2ELE A;  2HUV A;  3F7T A;  1PJQ A;  2EJJ A;  4MUY A;  1WYZ A;  2DV7 A;  4EB3 A;  2OWG A;  2P9D A;  4MV5 A;  4MV0 A;  2DSH A;  4N7B A;  2Z6R A;  4MUX A;  2DXW A;  3HH1 A;  2EN5 A;  2EH5 A;  2E4N A;  2PCG A;  3FFY A;  3URK A;  2ED5 A;  2EHC A;  2CBF A;  2E8H A;  2EKA A;  3UWM A;  1PJT A;  2EK2 A;  2QBU A;  3NUT A;  2OWF A;  2ELD A;  2KYY A;  2NPN A;  2OWV A;  3ND1 A;  1S4D A;  2E0K A;  2EJK A;  4E16 A;  2BB3 A;  2EGL A;  2EHL A;  2EH4 A;  3KE9 A;  4H4C A;  3I4T A;  1CBF A;  3T0F A;  3T0G A;  2P2X A;  3SZL A;  2PCH A;  3FQ6 A;  2EL1 A;  3KEL A;  2E16 A;  2EK7 A;  3TIX B;  2P6D A;  2EMU A;  2PCA A;  2E08 A;  3KWP A;  2HR8 A;  3LMM A;  1VCE A;  2DXV A;  2ENI A;  2P5C A;  3KEM A;  2EGB A;  2EH2 A;  4H4D A;  2ZVB A;  2P6K A;  2DSI A;  2PCK A;  2P6L A;  2PCM A;  3UV7 A;  2EL0 A;  2OWU A;  2E8Q A;  2HUQ A;  3DNF A;  3UV6 A;  2E8S A;  2DXX A;  2EL3 A;  2HUX A;  3KE8 A;  3SZU A;  2E17 A;  3ZGL A;  2EEQ A;  2EJZ A;  3UTC A;  3NDC A;  1V9A A;  2EGS A;  2DV4 A;  2HUT A;  2YBQ A;  3UV3 A;  2P5F A;  2PCI A;  2EK4 A;  3NEI A;  2DV5 A;  1WNG A;  1VHV A;  2E4R A;  2E7R A;  2YBO A;  1VE2 A;  2E07 A;  1WDE A;  2EMR A;  2E0N A;  3KEF A;  2DEK A; 
#chains in the Genus database with same CATH homology
 2DV3 A;  1PJS A;  2E8R A;  1VA0 A;  2PB6 A;  2DSG A;  2PB5 A;  2EK3 A;  3ZGN A;  2EL2 A;  3SZO A;  2ZVC A;  2P6I A;  4H4E A;  2OWK A;  5HW4 A;  2E15 A;  2ED3 A;  2PB4 A;  3UTD A;  2ELE A;  2HUV A;  3F7T A;  1PJQ A;  2EJJ A;  4MUY A;  1WYZ A;  2DV7 A;  4EB3 A;  2OWG A;  2P9D A;  4MV5 A;  4MV0 A;  2DSH A;  4N7B A;  2Z6R A;  4MUX A;  2DXW A;  3HH1 A;  2EN5 A;  2EH5 A;  2E4N A;  2PCG A;  3FFY A;  3URK A;  2ED5 A;  2EHC A;  2CBF A;  2E8H A;  2EKA A;  3UWM A;  1PJT A;  2EK2 A;  2QBU A;  3NUT A;  2OWF A;  2ELD A;  2KYY A;  2NPN A;  2OWV A;  3ND1 A;  1S4D A;  2E0K A;  2EJK A;  4E16 A;  2BB3 A;  2EGL A;  2EHL A;  2EH4 A;  3KE9 A;  4H4C A;  3I4T A;  1CBF A;  3T0F A;  3T0G A;  2P2X A;  3SZL A;  2PCH A;  3FQ6 A;  2EL1 A;  3KEL A;  2E16 A;  2EK7 A;  3TIX B;  2P6D A;  2EMU A;  2PCA A;  2E08 A;  3KWP A;  2HR8 A;  3LMM A;  1VCE A;  2DXV A;  2ENI A;  2P5C A;  3KEM A;  2EGB A;  2EH2 A;  4H4D A;  2ZVB A;  2P6K A;  2DSI A;  2PCK A;  2P6L A;  2PCM A;  3UV7 A;  2EL0 A;  2OWU A;  2E8Q A;  2HUQ A;  3DNF A;  3UV6 A;  2E8S A;  2DXX A;  2EL3 A;  2HUX A;  3KE8 A;  3SZU A;  2E17 A;  3ZGL A;  2EEQ A;  2EJZ A;  3UTC A;  3NDC A;  1V9A A;  2EGS A;  2DV4 A;  2HUT A;  2YBQ A;  3UV3 A;  2P5F A;  2PCI A;  2EK4 A;  3NEI A;  2DV5 A;  1WNG A;  1VHV A;  2E4R A;  2E7R A;  2YBO A;  1VE2 A;  2E07 A;  1WDE A;  2EMR A;  2E0N A;  3KEF A;  2DEK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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