2PCHA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLECAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords Probable diphthine synthase
total genus 86
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2pchA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2pchA01
2PCIA 3FFYA 4E16A 2EJKA 2E8SA 2PCAA 2DXWA 2E17A 2OWGA 2PB4A 2OWKA 2ELEA 3NUTA 1VA0A 2E0KA 2P2XA 1WYZA 2EHLA 2DV3A 2ZVCA 1S4DA 3I4TA 2NPNA 2HR8A 1PJQA 2PCGA 2E4NA 2EKAA 2HUQA 2DSIA 2E08A 2EH4A 2ELDA 2PCHA 2DSHA 2E8HA 5HW4A 2DXVA 1PJSA 2EGSA 3NDCA 1PJTA 2EL1A 2P9DA 2CBFA 2E4RA 2E15A 2YBOA 2ENIA 2P6IA 2EGBA 3ND1A 2EMRA 2Z6RA 2ED5A 2DSGA 1V9AA 2OWUA 2PB5A 2DV7A 2EN5A 2YBQA 2EJZA 1VHVA 2E8QA 2DXXA 2DV4A 2HUVA 3KWPA 2E8RA 2PCMA 2EH2A 2EK4A 2EL0A 2HUXA 2E0NA 2P6LA 2EL3A 2OWFA 2EK2A 1VE2A 2EEQA 2EK3A 2ZVBA 2QBUA 2P5FA 1WDEA 3FQ6A 2P5CA 2EK7A 2E07A 2E16A 3HH1A 2P6DA 2E7RA 2EGLA 3NEIA 1CBFA 2EJJA 2PB6A 2PCKA 2BB3A 2P6KA 2EL2A 1VCEA 2EHCA 2EMUA 1WNGA 2EH5A 2DEKA 2DV5A 2HUTA 2OWVA 2ED3A
chains in the Genus database with same CATH superfamily
2PCIA 3FFYA 4EB3A 4E16A 2EJKA 2E8SA 2PCAA 3SZOA 2DXWA 2E17A 2OWGA 2PB4A 3F7TA 3ZGNA 4MUXA 2OWKA 4MV5A 2ELEA 3NUTA 1VA0A 2E0KA 3UTDA 2P2XA 4MUYA 1WYZA 2EHLA 2DV3A 2ZVCA 4H4EA 1S4DA 4MV0A 3I4TA 2NPNA 2HR8A 1PJQA 2PCGA 3DNFA 2E4NA 2EKAA 4H4DA 2HUQA 3T0FA 2DSIA 2E08A 2EH4A 2ELDA 2PCHA 2DSHA 2E8HA 3KEMA 5HW4A 2DXVA 1PJSA 2EGSA 3KEFA 2KYYA 3NDCA 1PJTA 2EL1A 3T0GA 2P9DA 3ZGLA 2CBFA 2E4RA 2E15A 2YBOA 2ENIA 2P6IA 4N7BA 2EGBA 3ND1A 2EMRA 2Z6RA 2ED5A 3UV3A 2DSGA 1V9AA 2OWUA 2PB5A 2DV7A 2EN5A 2YBQA 2EJZA 1VHVA 2E8QA 2DXXA 2DV4A 2HUVA 3KWPA 3UWMA 2E8RA 2PCMA 2EH2A 3SZLA 2EK4A 2EL0A 3UV6A 4H4CA 3KE8A 2HUXA 2E0NA 3URKA 2P6LA 3KE9A 2EL3A 3LMMA 2OWFA 2EK2A 3UTCA 1VE2A 2EEQA 2EK3A 2ZVBA 2QBUA 3KELA 2P5FA 1WDEA 3FQ6A 2P5CA 2EK7A 3TIXB 2E07A 2E16A 3HH1A 2P6DA 2E7RA 2EGLA 3NEIA 1CBFA 2EJJA 2PB6A 2PCKA 2BB3A 3SZUA 3UV7A 2P6KA 2EL2A 1VCEA 2EHCA 2EMUA 1WNGA 2EH5A 2DEKA 2DV5A 2HUTA 2OWVA 2ED3A
chains in the Genus database with same CATH topology
2PCIA 3FFYA 4EB3A 4E16A 2EJKA 2E8SA 2PCAA 3SZOA 2DXWA 2E17A 2OWGA 2PB4A 3F7TA 3ZGNA 4MUXA 2OWKA 4MV5A 2ELEA 3NUTA 1VA0A 2E0KA 3UTDA 2P2XA 4MUYA 1WYZA 2EHLA 2DV3A 2ZVCA 4H4EA 1S4DA 4MV0A 3I4TA 2NPNA 2HR8A 1PJQA 2PCGA 3DNFA 2E4NA 2EKAA 4H4DA 2HUQA 3T0FA 2DSIA 2E08A 2EH4A 2ELDA 2PCHA 2DSHA 2E8HA 3KEMA 5HW4A 2DXVA 1PJSA 2EGSA 3KEFA 2KYYA 3NDCA 1PJTA 2EL1A 3T0GA 2P9DA 3ZGLA 2CBFA 2E4RA 2E15A 2YBOA 2ENIA 2P6IA 4N7BA 2EGBA 3ND1A 2EMRA 2Z6RA 2ED5A 3UV3A 2DSGA 1V9AA 2OWUA 2PB5A 2DV7A 2EN5A 2YBQA 2EJZA 1VHVA 2E8QA 2DXXA 2DV4A 2HUVA 3KWPA 3UWMA 2E8RA 2PCMA 2EH2A 3SZLA 2EK4A 2EL0A 3UV6A 4H4CA 3KE8A 2HUXA 2E0NA 3URKA 2P6LA 3KE9A 2EL3A 3LMMA 2OWFA 2EK2A 3UTCA 1VE2A 2EEQA 2EK3A 2ZVBA 2QBUA 3KELA 2P5FA 1WDEA 3FQ6A 2P5CA 2EK7A 3TIXB 2E07A 2E16A 3HH1A 2P6DA 2E7RA 2EGLA 3NEIA 1CBFA 2EJJA 2PB6A 2PCKA 2BB3A 3SZUA 3UV7A 2P6KA 2EL2A 1VCEA 2EHCA 2EMUA 1WNGA 2EH5A 2DEKA 2DV5A 2HUTA 2OWVA 2ED3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PCI A;  3FFY A;  4E16 A;  2EJK A;  2E8S A;  2PCA A;  2DXW A;  2E17 A;  2OWG A;  2PB4 A;  2OWK A;  2ELE A;  3NUT A;  1VA0 A;  2E0K A;  2P2X A;  1WYZ A;  2EHL A;  2DV3 A;  2ZVC A;  1S4D A;  3I4T A;  2NPN A;  2HR8 A;  1PJQ A;  2PCG A;  2E4N A;  2EKA A;  2HUQ A;  2DSI A;  2E08 A;  2EH4 A;  2ELD A;  2PCH A;  2DSH A;  2E8H A;  5HW4 A;  2DXV A;  1PJS A;  2EGS A;  3NDC A;  1PJT A;  2EL1 A;  2P9D A;  2CBF A;  2E4R A;  2E15 A;  2YBO A;  2ENI A;  2P6I A;  2EGB A;  3ND1 A;  2EMR A;  2Z6R A;  2ED5 A;  2DSG A;  1V9A A;  2OWU A;  2PB5 A;  2DV7 A;  2EN5 A;  2YBQ A;  2EJZ A;  1VHV A;  2E8Q A;  2DXX A;  2DV4 A;  2HUV A;  3KWP A;  2E8R A;  2PCM A;  2EH2 A;  2EK4 A;  2EL0 A;  2HUX A;  2E0N A;  2P6L A;  2EL3 A;  2OWF A;  2EK2 A;  1VE2 A;  2EEQ A;  2EK3 A;  2ZVB A;  2QBU A;  2P5F A;  1WDE A;  3FQ6 A;  2P5C A;  2EK7 A;  2E07 A;  2E16 A;  3HH1 A;  2P6D A;  2E7R A;  2EGL A;  3NEI A;  1CBF A;  2EJJ A;  2PB6 A;  2PCK A;  2BB3 A;  2P6K A;  2EL2 A;  1VCE A;  2EHC A;  2EMU A;  1WNG A;  2EH5 A;  2DEK A;  2DV5 A;  2HUT A;  2OWV A;  2ED3 A; 
#chains in the Genus database with same CATH topology
 2PCI A;  3FFY A;  4EB3 A;  4E16 A;  2EJK A;  2E8S A;  2PCA A;  3SZO A;  2DXW A;  2E17 A;  2OWG A;  2PB4 A;  3F7T A;  3ZGN A;  4MUX A;  2OWK A;  4MV5 A;  2ELE A;  3NUT A;  1VA0 A;  2E0K A;  3UTD A;  2P2X A;  4MUY A;  1WYZ A;  2EHL A;  2DV3 A;  2ZVC A;  4H4E A;  1S4D A;  4MV0 A;  3I4T A;  2NPN A;  2HR8 A;  1PJQ A;  2PCG A;  3DNF A;  2E4N A;  2EKA A;  4H4D A;  2HUQ A;  3T0F A;  2DSI A;  2E08 A;  2EH4 A;  2ELD A;  2PCH A;  2DSH A;  2E8H A;  3KEM A;  5HW4 A;  2DXV A;  1PJS A;  2EGS A;  3KEF A;  2KYY A;  3NDC A;  1PJT A;  2EL1 A;  3T0G A;  2P9D A;  3ZGL A;  2CBF A;  2E4R A;  2E15 A;  2YBO A;  2ENI A;  2P6I A;  4N7B A;  2EGB A;  3ND1 A;  2EMR A;  2Z6R A;  2ED5 A;  3UV3 A;  2DSG A;  1V9A A;  2OWU A;  2PB5 A;  2DV7 A;  2EN5 A;  2YBQ A;  2EJZ A;  1VHV A;  2E8Q A;  2DXX A;  2DV4 A;  2HUV A;  3KWP A;  3UWM A;  2E8R A;  2PCM A;  2EH2 A;  3SZL A;  2EK4 A;  2EL0 A;  3UV6 A;  4H4C A;  3KE8 A;  2HUX A;  2E0N A;  3URK A;  2P6L A;  3KE9 A;  2EL3 A;  3LMM A;  2OWF A;  2EK2 A;  3UTC A;  1VE2 A;  2EEQ A;  2EK3 A;  2ZVB A;  2QBU A;  3KEL A;  2P5F A;  1WDE A;  3FQ6 A;  2P5C A;  2EK7 A;  3TIX B;  2E07 A;  2E16 A;  3HH1 A;  2P6D A;  2E7R A;  2EGL A;  3NEI A;  1CBF A;  2EJJ A;  2PB6 A;  2PCK A;  2BB3 A;  3SZU A;  3UV7 A;  2P6K A;  2EL2 A;  1VCE A;  2EHC A;  2EMU A;  1WNG A;  2EH5 A;  2DEK A;  2DV5 A;  2HUT A;  2OWV A;  2ED3 A; 
#chains in the Genus database with same CATH homology
 2PCI A;  3FFY A;  4EB3 A;  4E16 A;  2EJK A;  2E8S A;  2PCA A;  3SZO A;  2DXW A;  2E17 A;  2OWG A;  2PB4 A;  3F7T A;  3ZGN A;  4MUX A;  2OWK A;  4MV5 A;  2ELE A;  3NUT A;  1VA0 A;  2E0K A;  3UTD A;  2P2X A;  4MUY A;  1WYZ A;  2EHL A;  2DV3 A;  2ZVC A;  4H4E A;  1S4D A;  4MV0 A;  3I4T A;  2NPN A;  2HR8 A;  1PJQ A;  2PCG A;  3DNF A;  2E4N A;  2EKA A;  4H4D A;  2HUQ A;  3T0F A;  2DSI A;  2E08 A;  2EH4 A;  2ELD A;  2PCH A;  2DSH A;  2E8H A;  3KEM A;  5HW4 A;  2DXV A;  1PJS A;  2EGS A;  3KEF A;  2KYY A;  3NDC A;  1PJT A;  2EL1 A;  3T0G A;  2P9D A;  3ZGL A;  2CBF A;  2E4R A;  2E15 A;  2YBO A;  2ENI A;  2P6I A;  4N7B A;  2EGB A;  3ND1 A;  2EMR A;  2Z6R A;  2ED5 A;  3UV3 A;  2DSG A;  1V9A A;  2OWU A;  2PB5 A;  2DV7 A;  2EN5 A;  2YBQ A;  2EJZ A;  1VHV A;  2E8Q A;  2DXX A;  2DV4 A;  2HUV A;  3KWP A;  3UWM A;  2E8R A;  2PCM A;  2EH2 A;  3SZL A;  2EK4 A;  2EL0 A;  3UV6 A;  4H4C A;  3KE8 A;  2HUX A;  2E0N A;  3URK A;  2P6L A;  3KE9 A;  2EL3 A;  3LMM A;  2OWF A;  2EK2 A;  3UTC A;  1VE2 A;  2EEQ A;  2EK3 A;  2ZVB A;  2QBU A;  3KEL A;  2P5F A;  1WDE A;  3FQ6 A;  2P5C A;  2EK7 A;  3TIX B;  2E07 A;  2E16 A;  3HH1 A;  2P6D A;  2E7R A;  2EGL A;  3NEI A;  1CBF A;  2EJJ A;  2PB6 A;  2PCK A;  2BB3 A;  3SZU A;  3UV7 A;  2P6K A;  2EL2 A;  1VCE A;  2EHC A;  2EMU A;  1WNG A;  2EH5 A;  2DEK A;  2DV5 A;  2HUT A;  2OWV A;  2ED3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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