2PCHA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLECAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords Probable diphthine synthase
total genus 86
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2pchA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2pchA01
2EK7A 2P6KA 2E8QA 2ELDA 2E0NA 2HUXA 2BB3A 2CBFA 1S4DA 1PJTA 2EL2A 2EL1A 2P6IA 2DXVA 2EHLA 2DV7A 2DV5A 1WDEA 2DXXA 3NUTA 2EMRA 2OWUA 1VCEA 2E4NA 2EK2A 2PCMA 2DEKA 2EK3A 2DXWA 1VHVA 2HUVA 2EK4A 2P5FA 4E16A 2P6LA 2PB4A 2E0KA 2DSGA 2YBQA 3ND1A 2PB6A 2DV3A 2PB5A 2EKAA 1PJQA 2P6DA 2Z6RA 3FQ6A 2ED5A 5HW4A 3KWPA 2EH4A 2DV4A 2EJZA 2E4RA 3I4TA 2EJKA 2HUTA 2OWGA 3HH1A 2PCGA 2P5CA 2PCKA 1VE2A 2PCIA 2P2XA 2EH5A 1VA0A 2ZVBA 2QBUA 2E17A 2EGLA 2OWFA 2EGSA 1V9AA 2EL0A 2EH2A 2HUQA 2NPNA 2E7RA 2ZVCA 2E8HA 2E15A 1PJSA 2EJJA 2EGBA 1WNGA 2E08A 2E07A 3NEIA 3NDCA 2E16A 2HR8A 2E8SA 2E8RA 2PCHA 2OWKA 2P9DA 2ELEA 2EN5A 2DSHA 2ED3A 2EEQA 1CBFA 2EL3A 1WYZA 2OWVA 3FFYA 2EMUA 2EHCA 2ENIA 2PCAA 2YBOA 2DSIA
chains in the Genus database with same CATH superfamily
2EK7A 2P6KA 2E8QA 2ELDA 2E0NA 2HUXA 2BB3A 2CBFA 1S4DA 1PJTA 2EL2A 2EL1A 2P6IA 2DXVA 2EHLA 2DV7A 2DV5A 1WDEA 2DXXA 3NUTA 2EMRA 3T0GA 3KEMA 2OWUA 1VCEA 3SZOA 4N7BA 2E4NA 2EK2A 2PCMA 2DEKA 2EK3A 2DXWA 1VHVA 2HUVA 3ZGLA 3DNFA 2EK4A 2P5FA 4E16A 2P6LA 2PB4A 2E0KA 2DSGA 4H4DA 2YBQA 3ND1A 2PB6A 2DV3A 2PB5A 2EKAA 1PJQA 2P6DA 2Z6RA 3LMMA 3FQ6A 3T0FA 2ED5A 5HW4A 4MV5A 3KWPA 2EH4A 3UV6A 2DV4A 3UTCA 2EJZA 2E4RA 3I4TA 4H4CA 3SZUA 2EJKA 2HUTA 2OWGA 3F7TA 3HH1A 2KYYA 2PCGA 2P5CA 2PCKA 1VE2A 2PCIA 3TIXB 2P2XA 2EH5A 1VA0A 3UWMA 3UTDA 2ZVBA 2QBUA 2E17A 2EGLA 2OWFA 3UV3A 4MV0A 2EGSA 1V9AA 2EL0A 2EH2A 2HUQA 2NPNA 2E7RA 4MUXA 2ZVCA 2E8HA 3KELA 2E15A 1PJSA 2EJJA 2EGBA 3KEFA 3UV7A 1WNGA 2E08A 2E07A 3KE8A 4H4EA 3ZGNA 3NEIA 3NDCA 2E16A 2HR8A 2E8SA 2E8RA 3URKA 2PCHA 2OWKA 2P9DA 2ELEA 4EB3A 2EN5A 2DSHA 2ED3A 2EEQA 1CBFA 4MUYA 2EL3A 1WYZA 3KE9A 2OWVA 3FFYA 2EMUA 2EHCA 2ENIA 3SZLA 2PCAA 2YBOA 2DSIA
chains in the Genus database with same CATH topology
2EK7A 2P6KA 2E8QA 2ELDA 2E0NA 2HUXA 2BB3A 2CBFA 1S4DA 1PJTA 2EL2A 2EL1A 2P6IA 2DXVA 2EHLA 2DV7A 2DV5A 1WDEA 2DXXA 3NUTA 2EMRA 3T0GA 3KEMA 2OWUA 1VCEA 3SZOA 4N7BA 2E4NA 2EK2A 2PCMA 2DEKA 2EK3A 2DXWA 1VHVA 2HUVA 3ZGLA 3DNFA 2EK4A 2P5FA 4E16A 2P6LA 2PB4A 2E0KA 2DSGA 4H4DA 2YBQA 3ND1A 2PB6A 2DV3A 2PB5A 2EKAA 1PJQA 2P6DA 2Z6RA 3LMMA 3FQ6A 3T0FA 2ED5A 5HW4A 4MV5A 3KWPA 2EH4A 3UV6A 2DV4A 3UTCA 2EJZA 2E4RA 3I4TA 4H4CA 3SZUA 2EJKA 2HUTA 2OWGA 3F7TA 3HH1A 2KYYA 2PCGA 2P5CA 2PCKA 1VE2A 2PCIA 3TIXB 2P2XA 2EH5A 1VA0A 3UWMA 3UTDA 2ZVBA 2QBUA 2E17A 2EGLA 2OWFA 3UV3A 4MV0A 2EGSA 1V9AA 2EL0A 2EH2A 2HUQA 2NPNA 2E7RA 4MUXA 2ZVCA 2E8HA 3KELA 2E15A 1PJSA 2EJJA 2EGBA 3KEFA 3UV7A 1WNGA 2E08A 2E07A 3KE8A 4H4EA 3ZGNA 3NEIA 3NDCA 2E16A 2HR8A 2E8SA 2E8RA 3URKA 2PCHA 2OWKA 2P9DA 2ELEA 4EB3A 2EN5A 2DSHA 2ED3A 2EEQA 1CBFA 4MUYA 2EL3A 1WYZA 3KE9A 2OWVA 3FFYA 2EMUA 2EHCA 2ENIA 3SZLA 2PCAA 2YBOA 2DSIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EK7 A;  2P6K A;  2E8Q A;  2ELD A;  2E0N A;  2HUX A;  2BB3 A;  2CBF A;  1S4D A;  1PJT A;  2EL2 A;  2EL1 A;  2P6I A;  2DXV A;  2EHL A;  2DV7 A;  2DV5 A;  1WDE A;  2DXX A;  3NUT A;  2EMR A;  2OWU A;  1VCE A;  2E4N A;  2EK2 A;  2PCM A;  2DEK A;  2EK3 A;  2DXW A;  1VHV A;  2HUV A;  2EK4 A;  2P5F A;  4E16 A;  2P6L A;  2PB4 A;  2E0K A;  2DSG A;  2YBQ A;  3ND1 A;  2PB6 A;  2DV3 A;  2PB5 A;  2EKA A;  1PJQ A;  2P6D A;  2Z6R A;  3FQ6 A;  2ED5 A;  5HW4 A;  3KWP A;  2EH4 A;  2DV4 A;  2EJZ A;  2E4R A;  3I4T A;  2EJK A;  2HUT A;  2OWG A;  3HH1 A;  2PCG A;  2P5C A;  2PCK A;  1VE2 A;  2PCI A;  2P2X A;  2EH5 A;  1VA0 A;  2ZVB A;  2QBU A;  2E17 A;  2EGL A;  2OWF A;  2EGS A;  1V9A A;  2EL0 A;  2EH2 A;  2HUQ A;  2NPN A;  2E7R A;  2ZVC A;  2E8H A;  2E15 A;  1PJS A;  2EJJ A;  2EGB A;  1WNG A;  2E08 A;  2E07 A;  3NEI A;  3NDC A;  2E16 A;  2HR8 A;  2E8S A;  2E8R A;  2PCH A;  2OWK A;  2P9D A;  2ELE A;  2EN5 A;  2DSH A;  2ED3 A;  2EEQ A;  1CBF A;  2EL3 A;  1WYZ A;  2OWV A;  3FFY A;  2EMU A;  2EHC A;  2ENI A;  2PCA A;  2YBO A;  2DSI A; 
#chains in the Genus database with same CATH topology
 2EK7 A;  2P6K A;  2E8Q A;  2ELD A;  2E0N A;  2HUX A;  2BB3 A;  2CBF A;  1S4D A;  1PJT A;  2EL2 A;  2EL1 A;  2P6I A;  2DXV A;  2EHL A;  2DV7 A;  2DV5 A;  1WDE A;  2DXX A;  3NUT A;  2EMR A;  3T0G A;  3KEM A;  2OWU A;  1VCE A;  3SZO A;  4N7B A;  2E4N A;  2EK2 A;  2PCM A;  2DEK A;  2EK3 A;  2DXW A;  1VHV A;  2HUV A;  3ZGL A;  3DNF A;  2EK4 A;  2P5F A;  4E16 A;  2P6L A;  2PB4 A;  2E0K A;  2DSG A;  4H4D A;  2YBQ A;  3ND1 A;  2PB6 A;  2DV3 A;  2PB5 A;  2EKA A;  1PJQ A;  2P6D A;  2Z6R A;  3LMM A;  3FQ6 A;  3T0F A;  2ED5 A;  5HW4 A;  4MV5 A;  3KWP A;  2EH4 A;  3UV6 A;  2DV4 A;  3UTC A;  2EJZ A;  2E4R A;  3I4T A;  4H4C A;  3SZU A;  2EJK A;  2HUT A;  2OWG A;  3F7T A;  3HH1 A;  2KYY A;  2PCG A;  2P5C A;  2PCK A;  1VE2 A;  2PCI A;  3TIX B;  2P2X A;  2EH5 A;  1VA0 A;  3UWM A;  3UTD A;  2ZVB A;  2QBU A;  2E17 A;  2EGL A;  2OWF A;  3UV3 A;  4MV0 A;  2EGS A;  1V9A A;  2EL0 A;  2EH2 A;  2HUQ A;  2NPN A;  2E7R A;  4MUX A;  2ZVC A;  2E8H A;  3KEL A;  2E15 A;  1PJS A;  2EJJ A;  2EGB A;  3KEF A;  3UV7 A;  1WNG A;  2E08 A;  2E07 A;  3KE8 A;  4H4E A;  3ZGN A;  3NEI A;  3NDC A;  2E16 A;  2HR8 A;  2E8S A;  2E8R A;  3URK A;  2PCH A;  2OWK A;  2P9D A;  2ELE A;  4EB3 A;  2EN5 A;  2DSH A;  2ED3 A;  2EEQ A;  1CBF A;  4MUY A;  2EL3 A;  1WYZ A;  3KE9 A;  2OWV A;  3FFY A;  2EMU A;  2EHC A;  2ENI A;  3SZL A;  2PCA A;  2YBO A;  2DSI A; 
#chains in the Genus database with same CATH homology
 2EK7 A;  2P6K A;  2E8Q A;  2ELD A;  2E0N A;  2HUX A;  2BB3 A;  2CBF A;  1S4D A;  1PJT A;  2EL2 A;  2EL1 A;  2P6I A;  2DXV A;  2EHL A;  2DV7 A;  2DV5 A;  1WDE A;  2DXX A;  3NUT A;  2EMR A;  3T0G A;  3KEM A;  2OWU A;  1VCE A;  3SZO A;  4N7B A;  2E4N A;  2EK2 A;  2PCM A;  2DEK A;  2EK3 A;  2DXW A;  1VHV A;  2HUV A;  3ZGL A;  3DNF A;  2EK4 A;  2P5F A;  4E16 A;  2P6L A;  2PB4 A;  2E0K A;  2DSG A;  4H4D A;  2YBQ A;  3ND1 A;  2PB6 A;  2DV3 A;  2PB5 A;  2EKA A;  1PJQ A;  2P6D A;  2Z6R A;  3LMM A;  3FQ6 A;  3T0F A;  2ED5 A;  5HW4 A;  4MV5 A;  3KWP A;  2EH4 A;  3UV6 A;  2DV4 A;  3UTC A;  2EJZ A;  2E4R A;  3I4T A;  4H4C A;  3SZU A;  2EJK A;  2HUT A;  2OWG A;  3F7T A;  3HH1 A;  2KYY A;  2PCG A;  2P5C A;  2PCK A;  1VE2 A;  2PCI A;  3TIX B;  2P2X A;  2EH5 A;  1VA0 A;  3UWM A;  3UTD A;  2ZVB A;  2QBU A;  2E17 A;  2EGL A;  2OWF A;  3UV3 A;  4MV0 A;  2EGS A;  1V9A A;  2EL0 A;  2EH2 A;  2HUQ A;  2NPN A;  2E7R A;  4MUX A;  2ZVC A;  2E8H A;  3KEL A;  2E15 A;  1PJS A;  2EJJ A;  2EGB A;  3KEF A;  3UV7 A;  1WNG A;  2E08 A;  2E07 A;  3KE8 A;  4H4E A;  3ZGN A;  3NEI A;  3NDC A;  2E16 A;  2HR8 A;  2E8S A;  2E8R A;  3URK A;  2PCH A;  2OWK A;  2P9D A;  2ELE A;  4EB3 A;  2EN5 A;  2DSH A;  2ED3 A;  2EEQ A;  1CBF A;  4MUY A;  2EL3 A;  1WYZ A;  3KE9 A;  2OWV A;  3FFY A;  2EMU A;  2EHC A;  2ENI A;  3SZL A;  2PCA A;  2YBO A;  2DSI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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