2PCHA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLECAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Probable diphthine synthase
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 86
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2pchA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2pchA01
3I4TA 2E08A 2E0NA 2P6DA 2E4NA 1PJSA 2DV4A 2P2XA 2DV5A 2EH4A 3HH1A 1VHVA 1VE2A 2HUQA 3NDCA 4E16A 1WYZA 2E15A 2EK3A 2PCMA 2NPNA 2DSIA 2DSGA 2P9DA 2EL3A 2PCAA 2PCKA 2EJZA 1V9AA 2EGSA 2ELDA 2E8SA 2ZVCA 2E0KA 2EHCA 2DXVA 2E16A 2ELEA 2OWKA 2E4RA 2DEKA 2YBOA 2EK4A 2PB5A 1VA0A 1VCEA 2P6LA 3FQ6A 2EGLA 2EN5A 2Z6RA 1S4DA 2EK2A 2DXWA 2EH5A 2BB3A 2HR8A 2EMRA 2HUTA 2E8RA 2E7RA 2EJJA 2OWFA 2QBUA 1WDEA 2E07A 2DV3A 2YBQA 1PJTA 2EHLA 2P6KA 3ND1A 2PCGA 2OWVA 5HW4A 2ED3A 2DV7A 2HUXA 2EH2A 2EEQA 2E8QA 1PJQA 2PB6A 3FFYA 2DXXA 3NEIA 2P5FA 2DSHA 2P6IA 2EK7A 3KWPA 2HUVA 2PCIA 2OWGA 2E8HA 2PB4A 2ED5A 2EKAA 2CBFA 2ZVBA 2EL1A 2EL0A 2PCHA 3NUTA 2EMUA 2OWUA 1CBFA 2P5CA 2EL2A 1WNGA 2E17A 2EJKA 2ENIA 2EGBA
chains in the Genus database with same CATH superfamily
3I4TA 2E08A 2E0NA 2P6DA 3T0GA 2E4NA 1PJSA 2DV4A 2P2XA 2DV5A 2EH4A 3HH1A 1VHVA 4H4CA 4MV0A 1VE2A 2HUQA 3NDCA 4E16A 1WYZA 2E15A 2EK3A 2PCMA 2NPNA 3UWMA 2DSIA 3UV3A 4MUXA 4MUYA 2DSGA 2P9DA 2EL3A 4MV5A 2PCAA 2PCKA 2EJZA 1V9AA 2EGSA 2ELDA 2E8SA 2ZVCA 2E0KA 3ZGLA 3T0FA 2EHCA 2DXVA 2E16A 4EB3A 2ELEA 2OWKA 3UTCA 2E4RA 2DEKA 2YBOA 2EK4A 2PB5A 3ZGNA 1VA0A 3LMMA 1VCEA 3UV6A 4H4DA 2P6LA 3KEFA 3FQ6A 2EGLA 2EN5A 2Z6RA 1S4DA 2EK2A 2DXWA 3KEMA 2EH5A 2BB3A 2HR8A 2EMRA 2HUTA 2E8RA 2E7RA 2EJJA 2OWFA 2QBUA 1WDEA 2E07A 2DV3A 2YBQA 1PJTA 2EHLA 4N7BA 2P6KA 3ND1A 2PCGA 2OWVA 3KELA 3TIXB 5HW4A 3KE8A 2ED3A 2DV7A 2HUXA 2EH2A 3SZOA 2EEQA 2E8QA 1PJQA 2PB6A 3FFYA 2DXXA 3NEIA 2P5FA 3SZUA 3SZLA 2DSHA 2P6IA 3UV7A 2EK7A 2KYYA 3F7TA 3KWPA 2HUVA 2PCIA 2OWGA 2E8HA 2PB4A 2ED5A 2EKAA 2CBFA 4H4EA 2ZVBA 2EL1A 2EL0A 3URKA 3KE9A 2PCHA 3NUTA 2EMUA 2OWUA 3UTDA 1CBFA 2P5CA 2EL2A 1WNGA 2E17A 2EJKA 2ENIA 2EGBA 3DNFA
chains in the Genus database with same CATH topology
3I4TA 2E08A 2E0NA 2P6DA 3T0GA 2E4NA 1PJSA 2DV4A 2P2XA 2DV5A 2EH4A 3HH1A 1VHVA 4H4CA 4MV0A 1VE2A 2HUQA 3NDCA 4E16A 1WYZA 2E15A 2EK3A 2PCMA 2NPNA 3UWMA 2DSIA 3UV3A 4MUXA 4MUYA 2DSGA 2P9DA 2EL3A 4MV5A 2PCAA 2PCKA 2EJZA 1V9AA 2EGSA 2ELDA 2E8SA 2ZVCA 2E0KA 3ZGLA 3T0FA 2EHCA 2DXVA 2E16A 4EB3A 2ELEA 2OWKA 3UTCA 2E4RA 2DEKA 2YBOA 2EK4A 2PB5A 3ZGNA 1VA0A 3LMMA 1VCEA 3UV6A 4H4DA 2P6LA 3KEFA 3FQ6A 2EGLA 2EN5A 2Z6RA 1S4DA 2EK2A 2DXWA 3KEMA 2EH5A 2BB3A 2HR8A 2EMRA 2HUTA 2E8RA 2E7RA 2EJJA 2OWFA 2QBUA 1WDEA 2E07A 2DV3A 2YBQA 1PJTA 2EHLA 4N7BA 2P6KA 3ND1A 2PCGA 2OWVA 3KELA 3TIXB 5HW4A 3KE8A 2ED3A 2DV7A 2HUXA 2EH2A 3SZOA 2EEQA 2E8QA 1PJQA 2PB6A 3FFYA 2DXXA 3NEIA 2P5FA 3SZUA 3SZLA 2DSHA 2P6IA 3UV7A 2EK7A 2KYYA 3F7TA 3KWPA 2HUVA 2PCIA 2OWGA 2E8HA 2PB4A 2ED5A 2EKAA 2CBFA 4H4EA 2ZVBA 2EL1A 2EL0A 3URKA 3KE9A 2PCHA 3NUTA 2EMUA 2OWUA 3UTDA 1CBFA 2P5CA 2EL2A 1WNGA 2E17A 2EJKA 2ENIA 2EGBA 3DNFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3I4T A;  2E08 A;  2E0N A;  2P6D A;  2E4N A;  1PJS A;  2DV4 A;  2P2X A;  2DV5 A;  2EH4 A;  3HH1 A;  1VHV A;  1VE2 A;  2HUQ A;  3NDC A;  4E16 A;  1WYZ A;  2E15 A;  2EK3 A;  2PCM A;  2NPN A;  2DSI A;  2DSG A;  2P9D A;  2EL3 A;  2PCA A;  2PCK A;  2EJZ A;  1V9A A;  2EGS A;  2ELD A;  2E8S A;  2ZVC A;  2E0K A;  2EHC A;  2DXV A;  2E16 A;  2ELE A;  2OWK A;  2E4R A;  2DEK A;  2YBO A;  2EK4 A;  2PB5 A;  1VA0 A;  1VCE A;  2P6L A;  3FQ6 A;  2EGL A;  2EN5 A;  2Z6R A;  1S4D A;  2EK2 A;  2DXW A;  2EH5 A;  2BB3 A;  2HR8 A;  2EMR A;  2HUT A;  2E8R A;  2E7R A;  2EJJ A;  2OWF A;  2QBU A;  1WDE A;  2E07 A;  2DV3 A;  2YBQ A;  1PJT A;  2EHL A;  2P6K A;  3ND1 A;  2PCG A;  2OWV A;  5HW4 A;  2ED3 A;  2DV7 A;  2HUX A;  2EH2 A;  2EEQ A;  2E8Q A;  1PJQ A;  2PB6 A;  3FFY A;  2DXX A;  3NEI A;  2P5F A;  2DSH A;  2P6I A;  2EK7 A;  3KWP A;  2HUV A;  2PCI A;  2OWG A;  2E8H A;  2PB4 A;  2ED5 A;  2EKA A;  2CBF A;  2ZVB A;  2EL1 A;  2EL0 A;  2PCH A;  3NUT A;  2EMU A;  2OWU A;  1CBF A;  2P5C A;  2EL2 A;  1WNG A;  2E17 A;  2EJK A;  2ENI A;  2EGB A; 
#chains in the Genus database with same CATH topology
 3I4T A;  2E08 A;  2E0N A;  2P6D A;  3T0G A;  2E4N A;  1PJS A;  2DV4 A;  2P2X A;  2DV5 A;  2EH4 A;  3HH1 A;  1VHV A;  4H4C A;  4MV0 A;  1VE2 A;  2HUQ A;  3NDC A;  4E16 A;  1WYZ A;  2E15 A;  2EK3 A;  2PCM A;  2NPN A;  3UWM A;  2DSI A;  3UV3 A;  4MUX A;  4MUY A;  2DSG A;  2P9D A;  2EL3 A;  4MV5 A;  2PCA A;  2PCK A;  2EJZ A;  1V9A A;  2EGS A;  2ELD A;  2E8S A;  2ZVC A;  2E0K A;  3ZGL A;  3T0F A;  2EHC A;  2DXV A;  2E16 A;  4EB3 A;  2ELE A;  2OWK A;  3UTC A;  2E4R A;  2DEK A;  2YBO A;  2EK4 A;  2PB5 A;  3ZGN A;  1VA0 A;  3LMM A;  1VCE A;  3UV6 A;  4H4D A;  2P6L A;  3KEF A;  3FQ6 A;  2EGL A;  2EN5 A;  2Z6R A;  1S4D A;  2EK2 A;  2DXW A;  3KEM A;  2EH5 A;  2BB3 A;  2HR8 A;  2EMR A;  2HUT A;  2E8R A;  2E7R A;  2EJJ A;  2OWF A;  2QBU A;  1WDE A;  2E07 A;  2DV3 A;  2YBQ A;  1PJT A;  2EHL A;  4N7B A;  2P6K A;  3ND1 A;  2PCG A;  2OWV A;  3KEL A;  3TIX B;  5HW4 A;  3KE8 A;  2ED3 A;  2DV7 A;  2HUX A;  2EH2 A;  3SZO A;  2EEQ A;  2E8Q A;  1PJQ A;  2PB6 A;  3FFY A;  2DXX A;  3NEI A;  2P5F A;  3SZU A;  3SZL A;  2DSH A;  2P6I A;  3UV7 A;  2EK7 A;  2KYY A;  3F7T A;  3KWP A;  2HUV A;  2PCI A;  2OWG A;  2E8H A;  2PB4 A;  2ED5 A;  2EKA A;  2CBF A;  4H4E A;  2ZVB A;  2EL1 A;  2EL0 A;  3URK A;  3KE9 A;  2PCH A;  3NUT A;  2EMU A;  2OWU A;  3UTD A;  1CBF A;  2P5C A;  2EL2 A;  1WNG A;  2E17 A;  2EJK A;  2ENI A;  2EGB A;  3DNF A; 
#chains in the Genus database with same CATH homology
 3I4T A;  2E08 A;  2E0N A;  2P6D A;  3T0G A;  2E4N A;  1PJS A;  2DV4 A;  2P2X A;  2DV5 A;  2EH4 A;  3HH1 A;  1VHV A;  4H4C A;  4MV0 A;  1VE2 A;  2HUQ A;  3NDC A;  4E16 A;  1WYZ A;  2E15 A;  2EK3 A;  2PCM A;  2NPN A;  3UWM A;  2DSI A;  3UV3 A;  4MUX A;  4MUY A;  2DSG A;  2P9D A;  2EL3 A;  4MV5 A;  2PCA A;  2PCK A;  2EJZ A;  1V9A A;  2EGS A;  2ELD A;  2E8S A;  2ZVC A;  2E0K A;  3ZGL A;  3T0F A;  2EHC A;  2DXV A;  2E16 A;  4EB3 A;  2ELE A;  2OWK A;  3UTC A;  2E4R A;  2DEK A;  2YBO A;  2EK4 A;  2PB5 A;  3ZGN A;  1VA0 A;  3LMM A;  1VCE A;  3UV6 A;  4H4D A;  2P6L A;  3KEF A;  3FQ6 A;  2EGL A;  2EN5 A;  2Z6R A;  1S4D A;  2EK2 A;  2DXW A;  3KEM A;  2EH5 A;  2BB3 A;  2HR8 A;  2EMR A;  2HUT A;  2E8R A;  2E7R A;  2EJJ A;  2OWF A;  2QBU A;  1WDE A;  2E07 A;  2DV3 A;  2YBQ A;  1PJT A;  2EHL A;  4N7B A;  2P6K A;  3ND1 A;  2PCG A;  2OWV A;  3KEL A;  3TIX B;  5HW4 A;  3KE8 A;  2ED3 A;  2DV7 A;  2HUX A;  2EH2 A;  3SZO A;  2EEQ A;  2E8Q A;  1PJQ A;  2PB6 A;  3FFY A;  2DXX A;  3NEI A;  2P5F A;  3SZU A;  3SZL A;  2DSH A;  2P6I A;  3UV7 A;  2EK7 A;  2KYY A;  3F7T A;  3KWP A;  2HUV A;  2PCI A;  2OWG A;  2E8H A;  2PB4 A;  2ED5 A;  2EKA A;  2CBF A;  4H4E A;  2ZVB A;  2EL1 A;  2EL0 A;  3URK A;  3KE9 A;  2PCH A;  3NUT A;  2EMU A;  2OWU A;  3UTD A;  1CBF A;  2P5C A;  2EL2 A;  1WNG A;  2E17 A;  2EJK A;  2ENI A;  2EGB A;  3DNF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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