2PCIA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 87
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
87
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLMIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords Probable diphthine synthase
total genus 87
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2pciA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2pciA01
3HH1A 2EL3A 2HUTA 3NDCA 2HUXA 2EHCA 2YBOA 2PCMA 2DSGA 2QBUA 2CBFA 2P2XA 2HUVA 2P6LA 2EJZA 1PJTA 2DXXA 2OWVA 2EKAA 2EK3A 2OWGA 2PCKA 2EN5A 2PCGA 2ZVBA 2OWUA 3I4TA 3ND1A 2EGBA 1PJQA 2P6DA 5HW4A 2ZVCA 2DV7A 2DSIA 1VE2A 1VCEA 2PCAA 2PB4A 2EK4A 2P5CA 1VHVA 2HUQA 2OWKA 1VA0A 2EJJA 2E0KA 2E16A 2EMUA 2EJKA 2DV5A 4E16A 2E8RA 3FQ6A 2HR8A 2P5FA 1V9AA 2E0NA 2PCHA 3NEIA 2EGSA 2DV3A 2E4RA 2DXVA 2DEKA 2E15A 2EMRA 2ED3A 2P6IA 2DSHA 2NPNA 2ELDA 2E4NA 1PJSA 2E8SA 1WYZA 2E7RA 3FFYA 2E07A 2EL0A 2EEQA 2OWFA 2E8QA 3KWPA 2ENIA 1CBFA 1S4DA 2E17A 2EL2A 2EL1A 3NUTA 2ED5A 2EK2A 2YBQA 2BB3A 2EGLA 2Z6RA 2DXWA 2P6KA 2E08A 2E8HA 2EK7A 2DV4A 2P9DA 2PB6A 2EH5A 2PCIA 2EHLA 2PB5A 1WDEA 2ELEA 1WNGA 2EH2A 2EH4A
chains in the Genus database with same CATH superfamily
3HH1A 2EL3A 4EB3A 2HUTA 3NDCA 3KEFA 2HUXA 2EHCA 2YBOA 2PCMA 2DSGA 3KE8A 2QBUA 2CBFA 2P2XA 2HUVA 3LMMA 2P6LA 2EJZA 1PJTA 4MV0A 2DXXA 2OWVA 2EKAA 2EK3A 2OWGA 4H4EA 2PCKA 2EN5A 2PCGA 2ZVBA 2OWUA 4MUYA 3I4TA 3UV6A 3ND1A 2EGBA 1PJQA 2P6DA 5HW4A 2ZVCA 2DV7A 2DSIA 1VE2A 1VCEA 2PCAA 2PB4A 2EK4A 2P5CA 1VHVA 3UV7A 2HUQA 2OWKA 1VA0A 2EJJA 2E0KA 3TIXB 3ZGLA 2E16A 3ZGNA 2EMUA 2EJKA 2DV5A 4E16A 2E8RA 3FQ6A 2HR8A 2P5FA 1V9AA 3SZLA 2E0NA 2PCHA 3NEIA 2EGSA 2DV3A 2E4RA 2DXVA 2DEKA 2E15A 3URKA 2EMRA 2ED3A 2P6IA 3UWMA 2DSHA 2NPNA 2ELDA 2E4NA 1PJSA 2E8SA 1WYZA 2E7RA 3FFYA 2E07A 2EL0A 3KE9A 2EEQA 2OWFA 2E8QA 3T0FA 4MUXA 3KWPA 2ENIA 3KELA 1CBFA 1S4DA 2E17A 2EL2A 2EL1A 3NUTA 2ED5A 3SZUA 2EK2A 3F7TA 2YBQA 2BB3A 2EGLA 3T0GA 2Z6RA 2DXWA 4H4CA 3DNFA 3UV3A 2P6KA 3SZOA 2E08A 3KEMA 4N7BA 4H4DA 2E8HA 2EK7A 2DV4A 3UTCA 3UTDA 2P9DA 2PB6A 2EH5A 2PCIA 2KYYA 2EHLA 2PB5A 1WDEA 2ELEA 1WNGA 4MV5A 2EH2A 2EH4A
chains in the Genus database with same CATH topology
3HH1A 2EL3A 4EB3A 2HUTA 3NDCA 3KEFA 2HUXA 2EHCA 2YBOA 2PCMA 2DSGA 3KE8A 2QBUA 2CBFA 2P2XA 2HUVA 3LMMA 2P6LA 2EJZA 1PJTA 4MV0A 2DXXA 2OWVA 2EKAA 2EK3A 2OWGA 4H4EA 2PCKA 2EN5A 2PCGA 2ZVBA 2OWUA 4MUYA 3I4TA 3UV6A 3ND1A 2EGBA 1PJQA 2P6DA 5HW4A 2ZVCA 2DV7A 2DSIA 1VE2A 1VCEA 2PCAA 2PB4A 2EK4A 2P5CA 1VHVA 3UV7A 2HUQA 2OWKA 1VA0A 2EJJA 2E0KA 3TIXB 3ZGLA 2E16A 3ZGNA 2EMUA 2EJKA 2DV5A 4E16A 2E8RA 3FQ6A 2HR8A 2P5FA 1V9AA 3SZLA 2E0NA 2PCHA 3NEIA 2EGSA 2DV3A 2E4RA 2DXVA 2DEKA 2E15A 3URKA 2EMRA 2ED3A 2P6IA 3UWMA 2DSHA 2NPNA 2ELDA 2E4NA 1PJSA 2E8SA 1WYZA 2E7RA 3FFYA 2E07A 2EL0A 3KE9A 2EEQA 2OWFA 2E8QA 3T0FA 4MUXA 3KWPA 2ENIA 3KELA 1CBFA 1S4DA 2E17A 2EL2A 2EL1A 3NUTA 2ED5A 3SZUA 2EK2A 3F7TA 2YBQA 2BB3A 2EGLA 3T0GA 2Z6RA 2DXWA 4H4CA 3DNFA 3UV3A 2P6KA 3SZOA 2E08A 3KEMA 4N7BA 4H4DA 2E8HA 2EK7A 2DV4A 3UTCA 3UTDA 2P9DA 2PB6A 2EH5A 2PCIA 2KYYA 2EHLA 2PB5A 1WDEA 2ELEA 1WNGA 4MV5A 2EH2A 2EH4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HH1 A;  2EL3 A;  2HUT A;  3NDC A;  2HUX A;  2EHC A;  2YBO A;  2PCM A;  2DSG A;  2QBU A;  2CBF A;  2P2X A;  2HUV A;  2P6L A;  2EJZ A;  1PJT A;  2DXX A;  2OWV A;  2EKA A;  2EK3 A;  2OWG A;  2PCK A;  2EN5 A;  2PCG A;  2ZVB A;  2OWU A;  3I4T A;  3ND1 A;  2EGB A;  1PJQ A;  2P6D A;  5HW4 A;  2ZVC A;  2DV7 A;  2DSI A;  1VE2 A;  1VCE A;  2PCA A;  2PB4 A;  2EK4 A;  2P5C A;  1VHV A;  2HUQ A;  2OWK A;  1VA0 A;  2EJJ A;  2E0K A;  2E16 A;  2EMU A;  2EJK A;  2DV5 A;  4E16 A;  2E8R A;  3FQ6 A;  2HR8 A;  2P5F A;  1V9A A;  2E0N A;  2PCH A;  3NEI A;  2EGS A;  2DV3 A;  2E4R A;  2DXV A;  2DEK A;  2E15 A;  2EMR A;  2ED3 A;  2P6I A;  2DSH A;  2NPN A;  2ELD A;  2E4N A;  1PJS A;  2E8S A;  1WYZ A;  2E7R A;  3FFY A;  2E07 A;  2EL0 A;  2EEQ A;  2OWF A;  2E8Q A;  3KWP A;  2ENI A;  1CBF A;  1S4D A;  2E17 A;  2EL2 A;  2EL1 A;  3NUT A;  2ED5 A;  2EK2 A;  2YBQ A;  2BB3 A;  2EGL A;  2Z6R A;  2DXW A;  2P6K A;  2E08 A;  2E8H A;  2EK7 A;  2DV4 A;  2P9D A;  2PB6 A;  2EH5 A;  2PCI A;  2EHL A;  2PB5 A;  1WDE A;  2ELE A;  1WNG A;  2EH2 A;  2EH4 A; 
#chains in the Genus database with same CATH topology
 3HH1 A;  2EL3 A;  4EB3 A;  2HUT A;  3NDC A;  3KEF A;  2HUX A;  2EHC A;  2YBO A;  2PCM A;  2DSG A;  3KE8 A;  2QBU A;  2CBF A;  2P2X A;  2HUV A;  3LMM A;  2P6L A;  2EJZ A;  1PJT A;  4MV0 A;  2DXX A;  2OWV A;  2EKA A;  2EK3 A;  2OWG A;  4H4E A;  2PCK A;  2EN5 A;  2PCG A;  2ZVB A;  2OWU A;  4MUY A;  3I4T A;  3UV6 A;  3ND1 A;  2EGB A;  1PJQ A;  2P6D A;  5HW4 A;  2ZVC A;  2DV7 A;  2DSI A;  1VE2 A;  1VCE A;  2PCA A;  2PB4 A;  2EK4 A;  2P5C A;  1VHV A;  3UV7 A;  2HUQ A;  2OWK A;  1VA0 A;  2EJJ A;  2E0K A;  3TIX B;  3ZGL A;  2E16 A;  3ZGN A;  2EMU A;  2EJK A;  2DV5 A;  4E16 A;  2E8R A;  3FQ6 A;  2HR8 A;  2P5F A;  1V9A A;  3SZL A;  2E0N A;  2PCH A;  3NEI A;  2EGS A;  2DV3 A;  2E4R A;  2DXV A;  2DEK A;  2E15 A;  3URK A;  2EMR A;  2ED3 A;  2P6I A;  3UWM A;  2DSH A;  2NPN A;  2ELD A;  2E4N A;  1PJS A;  2E8S A;  1WYZ A;  2E7R A;  3FFY A;  2E07 A;  2EL0 A;  3KE9 A;  2EEQ A;  2OWF A;  2E8Q A;  3T0F A;  4MUX A;  3KWP A;  2ENI A;  3KEL A;  1CBF A;  1S4D A;  2E17 A;  2EL2 A;  2EL1 A;  3NUT A;  2ED5 A;  3SZU A;  2EK2 A;  3F7T A;  2YBQ A;  2BB3 A;  2EGL A;  3T0G A;  2Z6R A;  2DXW A;  4H4C A;  3DNF A;  3UV3 A;  2P6K A;  3SZO A;  2E08 A;  3KEM A;  4N7B A;  4H4D A;  2E8H A;  2EK7 A;  2DV4 A;  3UTC A;  3UTD A;  2P9D A;  2PB6 A;  2EH5 A;  2PCI A;  2KYY A;  2EHL A;  2PB5 A;  1WDE A;  2ELE A;  1WNG A;  4MV5 A;  2EH2 A;  2EH4 A; 
#chains in the Genus database with same CATH homology
 3HH1 A;  2EL3 A;  4EB3 A;  2HUT A;  3NDC A;  3KEF A;  2HUX A;  2EHC A;  2YBO A;  2PCM A;  2DSG A;  3KE8 A;  2QBU A;  2CBF A;  2P2X A;  2HUV A;  3LMM A;  2P6L A;  2EJZ A;  1PJT A;  4MV0 A;  2DXX A;  2OWV A;  2EKA A;  2EK3 A;  2OWG A;  4H4E A;  2PCK A;  2EN5 A;  2PCG A;  2ZVB A;  2OWU A;  4MUY A;  3I4T A;  3UV6 A;  3ND1 A;  2EGB A;  1PJQ A;  2P6D A;  5HW4 A;  2ZVC A;  2DV7 A;  2DSI A;  1VE2 A;  1VCE A;  2PCA A;  2PB4 A;  2EK4 A;  2P5C A;  1VHV A;  3UV7 A;  2HUQ A;  2OWK A;  1VA0 A;  2EJJ A;  2E0K A;  3TIX B;  3ZGL A;  2E16 A;  3ZGN A;  2EMU A;  2EJK A;  2DV5 A;  4E16 A;  2E8R A;  3FQ6 A;  2HR8 A;  2P5F A;  1V9A A;  3SZL A;  2E0N A;  2PCH A;  3NEI A;  2EGS A;  2DV3 A;  2E4R A;  2DXV A;  2DEK A;  2E15 A;  3URK A;  2EMR A;  2ED3 A;  2P6I A;  3UWM A;  2DSH A;  2NPN A;  2ELD A;  2E4N A;  1PJS A;  2E8S A;  1WYZ A;  2E7R A;  3FFY A;  2E07 A;  2EL0 A;  3KE9 A;  2EEQ A;  2OWF A;  2E8Q A;  3T0F A;  4MUX A;  3KWP A;  2ENI A;  3KEL A;  1CBF A;  1S4D A;  2E17 A;  2EL2 A;  2EL1 A;  3NUT A;  2ED5 A;  3SZU A;  2EK2 A;  3F7T A;  2YBQ A;  2BB3 A;  2EGL A;  3T0G A;  2Z6R A;  2DXW A;  4H4C A;  3DNF A;  3UV3 A;  2P6K A;  3SZO A;  2E08 A;  3KEM A;  4N7B A;  4H4D A;  2E8H A;  2EK7 A;  2DV4 A;  3UTC A;  3UTD A;  2P9D A;  2PB6 A;  2EH5 A;  2PCI A;  2KYY A;  2EHL A;  2PB5 A;  1WDE A;  2ELE A;  1WNG A;  4MV5 A;  2EH2 A;  2EH4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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