2PCIA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 87
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
87
sequence length
265
structure length
265
Chain Sequence
MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKLIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLMIVEAEYLVEIAGAPREILRVNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
molecule keywords Probable diphthine synthase
total genus 87
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2pciA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2pciA01
2DXVA 2PCIA 2PB5A 2E8QA 1PJQA 1WDEA 2EL2A 2EH2A 2EL3A 2EN5A 2PCHA 1S4DA 2DV5A 2EH4A 2EK2A 2DEKA 2EK4A 3NDCA 2DXWA 1VHVA 2PCKA 2ED5A 2EMRA 2EJZA 3NUTA 2Z6RA 5HW4A 2P6KA 4E16A 2DV7A 2EEQA 3NEIA 2OWGA 1VA0A 2PCAA 2EGLA 3FFYA 2HR8A 2PCMA 2E8RA 1PJSA 2P9DA 2E8HA 2ELDA 3KWPA 2ED3A 2EHLA 2EHCA 2EK7A 2PCGA 2E15A 1WYZA 2OWVA 1VCEA 2E8SA 2OWUA 2E7RA 2BB3A 2EL0A 2E0NA 2DSHA 2DXXA 2E08A 2EGBA 2DSIA 2HUXA 2ZVBA 2HUTA 2P6DA 2EMUA 2E16A 2EJJA 2EH5A 2P5CA 1VE2A 2PB4A 1CBFA 2DSGA 2P5FA 2E17A 2ELEA 2EKAA 2HUQA 2OWFA 2P6IA 2EJKA 2E07A 2E4RA 2NPNA 2YBOA 1PJTA 3ND1A 2E4NA 2DV4A 2HUVA 2EL1A 2ZVCA 2E0KA 1WNGA 2P6LA 2PB6A 2CBFA 2DV3A 2EGSA 2EK3A 3HH1A 2ENIA 3FQ6A 2P2XA 2OWKA 1V9AA 2QBUA 2YBQA 3I4TA
chains in the Genus database with same CATH superfamily
2DXVA 2PCIA 2PB5A 2E8QA 1PJQA 1WDEA 2EL2A 3KE8A 4H4CA 4MV0A 2EH2A 2EL3A 3UV6A 2EN5A 2PCHA 1S4DA 2DV5A 3KEMA 2EH4A 2EK2A 2DEKA 2EK4A 3NDCA 2DXWA 3SZLA 1VHVA 2PCKA 2ED5A 2EMRA 2EJZA 3KE9A 4H4EA 3UV3A 3NUTA 3T0GA 2Z6RA 3KEFA 5HW4A 2P6KA 3SZOA 3UV7A 4E16A 2DV7A 2EEQA 3NEIA 3LMMA 3URKA 2OWGA 1VA0A 4MV5A 2PCAA 2EGLA 3T0FA 3FFYA 2HR8A 2PCMA 3UWMA 2E8RA 1PJSA 2P9DA 2E8HA 3KELA 2ELDA 3KWPA 2ED3A 2EHLA 2EHCA 2EK7A 2PCGA 2E15A 1WYZA 2OWVA 1VCEA 2E8SA 2OWUA 2E7RA 2BB3A 3ZGLA 2EL0A 2E0NA 2DSHA 2DXXA 2E08A 2EGBA 3DNFA 4MUXA 2DSIA 3UTDA 4N7BA 2HUXA 2ZVBA 2HUTA 2P6DA 2EMUA 2E16A 2EJJA 4EB3A 2EH5A 2P5CA 1VE2A 2PB4A 1CBFA 2DSGA 2P5FA 2E17A 2ELEA 2EKAA 2HUQA 2OWFA 2P6IA 2EJKA 4MUYA 2E07A 2E4RA 2NPNA 2YBOA 1PJTA 3ND1A 2E4NA 2DV4A 3F7TA 2HUVA 2EL1A 2ZVCA 2E0KA 1WNGA 2P6LA 2PB6A 2CBFA 2DV3A 2EGSA 2EK3A 3UTCA 2KYYA 3HH1A 3TIXB 2ENIA 3ZGNA 3FQ6A 2P2XA 2OWKA 3SZUA 1V9AA 2QBUA 4H4DA 2YBQA 3I4TA
chains in the Genus database with same CATH topology
2DXVA 2PCIA 2PB5A 2E8QA 1PJQA 1WDEA 2EL2A 3KE8A 4H4CA 4MV0A 2EH2A 2EL3A 3UV6A 2EN5A 2PCHA 1S4DA 2DV5A 3KEMA 2EH4A 2EK2A 2DEKA 2EK4A 3NDCA 2DXWA 3SZLA 1VHVA 2PCKA 2ED5A 2EMRA 2EJZA 3KE9A 4H4EA 3UV3A 3NUTA 3T0GA 2Z6RA 3KEFA 5HW4A 2P6KA 3SZOA 3UV7A 4E16A 2DV7A 2EEQA 3NEIA 3LMMA 3URKA 2OWGA 1VA0A 4MV5A 2PCAA 2EGLA 3T0FA 3FFYA 2HR8A 2PCMA 3UWMA 2E8RA 1PJSA 2P9DA 2E8HA 3KELA 2ELDA 3KWPA 2ED3A 2EHLA 2EHCA 2EK7A 2PCGA 2E15A 1WYZA 2OWVA 1VCEA 2E8SA 2OWUA 2E7RA 2BB3A 3ZGLA 2EL0A 2E0NA 2DSHA 2DXXA 2E08A 2EGBA 3DNFA 4MUXA 2DSIA 3UTDA 4N7BA 2HUXA 2ZVBA 2HUTA 2P6DA 2EMUA 2E16A 2EJJA 4EB3A 2EH5A 2P5CA 1VE2A 2PB4A 1CBFA 2DSGA 2P5FA 2E17A 2ELEA 2EKAA 2HUQA 2OWFA 2P6IA 2EJKA 4MUYA 2E07A 2E4RA 2NPNA 2YBOA 1PJTA 3ND1A 2E4NA 2DV4A 3F7TA 2HUVA 2EL1A 2ZVCA 2E0KA 1WNGA 2P6LA 2PB6A 2CBFA 2DV3A 2EGSA 2EK3A 3UTCA 2KYYA 3HH1A 3TIXB 2ENIA 3ZGNA 3FQ6A 2P2XA 2OWKA 3SZUA 1V9AA 2QBUA 4H4DA 2YBQA 3I4TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DXV A;  2PCI A;  2PB5 A;  2E8Q A;  1PJQ A;  1WDE A;  2EL2 A;  2EH2 A;  2EL3 A;  2EN5 A;  2PCH A;  1S4D A;  2DV5 A;  2EH4 A;  2EK2 A;  2DEK A;  2EK4 A;  3NDC A;  2DXW A;  1VHV A;  2PCK A;  2ED5 A;  2EMR A;  2EJZ A;  3NUT A;  2Z6R A;  5HW4 A;  2P6K A;  4E16 A;  2DV7 A;  2EEQ A;  3NEI A;  2OWG A;  1VA0 A;  2PCA A;  2EGL A;  3FFY A;  2HR8 A;  2PCM A;  2E8R A;  1PJS A;  2P9D A;  2E8H A;  2ELD A;  3KWP A;  2ED3 A;  2EHL A;  2EHC A;  2EK7 A;  2PCG A;  2E15 A;  1WYZ A;  2OWV A;  1VCE A;  2E8S A;  2OWU A;  2E7R A;  2BB3 A;  2EL0 A;  2E0N A;  2DSH A;  2DXX A;  2E08 A;  2EGB A;  2DSI A;  2HUX A;  2ZVB A;  2HUT A;  2P6D A;  2EMU A;  2E16 A;  2EJJ A;  2EH5 A;  2P5C A;  1VE2 A;  2PB4 A;  1CBF A;  2DSG A;  2P5F A;  2E17 A;  2ELE A;  2EKA A;  2HUQ A;  2OWF A;  2P6I A;  2EJK A;  2E07 A;  2E4R A;  2NPN A;  2YBO A;  1PJT A;  3ND1 A;  2E4N A;  2DV4 A;  2HUV A;  2EL1 A;  2ZVC A;  2E0K A;  1WNG A;  2P6L A;  2PB6 A;  2CBF A;  2DV3 A;  2EGS A;  2EK3 A;  3HH1 A;  2ENI A;  3FQ6 A;  2P2X A;  2OWK A;  1V9A A;  2QBU A;  2YBQ A;  3I4T A; 
#chains in the Genus database with same CATH topology
 2DXV A;  2PCI A;  2PB5 A;  2E8Q A;  1PJQ A;  1WDE A;  2EL2 A;  3KE8 A;  4H4C A;  4MV0 A;  2EH2 A;  2EL3 A;  3UV6 A;  2EN5 A;  2PCH A;  1S4D A;  2DV5 A;  3KEM A;  2EH4 A;  2EK2 A;  2DEK A;  2EK4 A;  3NDC A;  2DXW A;  3SZL A;  1VHV A;  2PCK A;  2ED5 A;  2EMR A;  2EJZ A;  3KE9 A;  4H4E A;  3UV3 A;  3NUT A;  3T0G A;  2Z6R A;  3KEF A;  5HW4 A;  2P6K A;  3SZO A;  3UV7 A;  4E16 A;  2DV7 A;  2EEQ A;  3NEI A;  3LMM A;  3URK A;  2OWG A;  1VA0 A;  4MV5 A;  2PCA A;  2EGL A;  3T0F A;  3FFY A;  2HR8 A;  2PCM A;  3UWM A;  2E8R A;  1PJS A;  2P9D A;  2E8H A;  3KEL A;  2ELD A;  3KWP A;  2ED3 A;  2EHL A;  2EHC A;  2EK7 A;  2PCG A;  2E15 A;  1WYZ A;  2OWV A;  1VCE A;  2E8S A;  2OWU A;  2E7R A;  2BB3 A;  3ZGL A;  2EL0 A;  2E0N A;  2DSH A;  2DXX A;  2E08 A;  2EGB A;  3DNF A;  4MUX A;  2DSI A;  3UTD A;  4N7B A;  2HUX A;  2ZVB A;  2HUT A;  2P6D A;  2EMU A;  2E16 A;  2EJJ A;  4EB3 A;  2EH5 A;  2P5C A;  1VE2 A;  2PB4 A;  1CBF A;  2DSG A;  2P5F A;  2E17 A;  2ELE A;  2EKA A;  2HUQ A;  2OWF A;  2P6I A;  2EJK A;  4MUY A;  2E07 A;  2E4R A;  2NPN A;  2YBO A;  1PJT A;  3ND1 A;  2E4N A;  2DV4 A;  3F7T A;  2HUV A;  2EL1 A;  2ZVC A;  2E0K A;  1WNG A;  2P6L A;  2PB6 A;  2CBF A;  2DV3 A;  2EGS A;  2EK3 A;  3UTC A;  2KYY A;  3HH1 A;  3TIX B;  2ENI A;  3ZGN A;  3FQ6 A;  2P2X A;  2OWK A;  3SZU A;  1V9A A;  2QBU A;  4H4D A;  2YBQ A;  3I4T A; 
#chains in the Genus database with same CATH homology
 2DXV A;  2PCI A;  2PB5 A;  2E8Q A;  1PJQ A;  1WDE A;  2EL2 A;  3KE8 A;  4H4C A;  4MV0 A;  2EH2 A;  2EL3 A;  3UV6 A;  2EN5 A;  2PCH A;  1S4D A;  2DV5 A;  3KEM A;  2EH4 A;  2EK2 A;  2DEK A;  2EK4 A;  3NDC A;  2DXW A;  3SZL A;  1VHV A;  2PCK A;  2ED5 A;  2EMR A;  2EJZ A;  3KE9 A;  4H4E A;  3UV3 A;  3NUT A;  3T0G A;  2Z6R A;  3KEF A;  5HW4 A;  2P6K A;  3SZO A;  3UV7 A;  4E16 A;  2DV7 A;  2EEQ A;  3NEI A;  3LMM A;  3URK A;  2OWG A;  1VA0 A;  4MV5 A;  2PCA A;  2EGL A;  3T0F A;  3FFY A;  2HR8 A;  2PCM A;  3UWM A;  2E8R A;  1PJS A;  2P9D A;  2E8H A;  3KEL A;  2ELD A;  3KWP A;  2ED3 A;  2EHL A;  2EHC A;  2EK7 A;  2PCG A;  2E15 A;  1WYZ A;  2OWV A;  1VCE A;  2E8S A;  2OWU A;  2E7R A;  2BB3 A;  3ZGL A;  2EL0 A;  2E0N A;  2DSH A;  2DXX A;  2E08 A;  2EGB A;  3DNF A;  4MUX A;  2DSI A;  3UTD A;  4N7B A;  2HUX A;  2ZVB A;  2HUT A;  2P6D A;  2EMU A;  2E16 A;  2EJJ A;  4EB3 A;  2EH5 A;  2P5C A;  1VE2 A;  2PB4 A;  1CBF A;  2DSG A;  2P5F A;  2E17 A;  2ELE A;  2EKA A;  2HUQ A;  2OWF A;  2P6I A;  2EJK A;  4MUY A;  2E07 A;  2E4R A;  2NPN A;  2YBO A;  1PJT A;  3ND1 A;  2E4N A;  2DV4 A;  3F7T A;  2HUV A;  2EL1 A;  2ZVC A;  2E0K A;  1WNG A;  2P6L A;  2PB6 A;  2CBF A;  2DV3 A;  2EGS A;  2EK3 A;  3UTC A;  2KYY A;  3HH1 A;  3TIX B;  2ENI A;  3ZGN A;  3FQ6 A;  2P2X A;  2OWK A;  3SZU A;  1V9A A;  2QBU A;  4H4D A;  2YBQ A;  3I4T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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