2PCMA

Crystal structure of ph0725 from pyrococcus horikoshii ot3
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
265
structure length
265
Chain Sequence
b'MVLYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRIQKMIGKEIRVLSREDVELNFENIVLPLAKENDVAFLTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVGITGLHIYKFGKSATVAYPEGNWFPTSYYDVIKENAERGLHTLLFLDIKAEKRMYMTANEAMELLLKVEDMKKGGVFTDDTLVVVLARAGSLNPTIRAGYVKDLIREDFGDPPHILIVPGKLHIVEAEYLVEIAGAPREILRVNV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords DIPHTHINE SYNTHASE
publication title Crystal structure of PH0725 from Pyrococcus horikoshii OT3
rcsb
source organism Pyrococcus horikoshii
molecule tags Transferase
total genus 82
structure length 265
sequence length 265
chains with identical sequence B
ec nomenclature ec 2.1.1.98: Diphthine synthase.
pdb deposition date 2007-03-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2pcmA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2pcmA01
2E15A 2E16A 2HUQA 2P6DA 2OWFA 2ELDA 2PCKA 2P6KA 2EGBA 2P6IA 2ELEA 2EL3A 2OWUA 2DV5A 3I4TA 2YBOA 1PJTA 2HUVA 3NEIA 1VE2A 2E17A 2PCAA 5HW4A 2EJJA 2EK2A 2EMUA 2P5FA 2PB6A 2PB5A 2DXWA 2OWVA 2P6LA 2P5CA 1V9AA 3NDCA 1WYZA 1PJQA 2DXXA 2E07A 2DSHA 2ZVCA 2EGLA 2DXVA 2EK4A 2E08A 3FFYA 2EL1A 2OWGA 2EGSA 1CBFA 2EJKA 2EJZA 2E4RA 2P9DA 2EMRA 2EH2A 2HUXA 2E0NA 2PCGA 3KWPA 1VHVA 2EHCA 2E7RA 3FQ6A 2EN5A 2EL2A 2PCMA 2BB3A 2ENIA 2E8SA 2E8HA 2P2XA 2E4NA 1WNGA 1VCEA 2QBUA 2Z6RA 2DSIA 2ED5A 1S4DA 2PCIA 2ZVBA 2E8QA 2OWKA 2EKAA 2EEQA 2DEKA 2E8RA 3NUTA 2E0KA 3ND1A 1PJSA 2DV3A 1WDEA 2EK3A 2PCHA 2EH4A 2EHLA 2EH5A 2EL0A 2EK7A 2HR8A 2YBQA 2NPNA 2DSGA 2PB4A 2DV7A 2ED3A 2HUTA 1VA0A 2DV4A 3HH1A 4E16A 2CBFA
chains in the Genus database with same CATH superfamily
3SZUA 4MUXA 2E15A 2E16A 2HUQA 2P6DA 2OWFA 2ELDA 3KE9A 2PCKA 2P6KA 2EGBA 2P6IA 2ELEA 3UWMA 4N7BA 2EL3A 4H4CA 2OWUA 2DV5A 3I4TA 2YBOA 1PJTA 4EB3A 2HUVA 3NEIA 3F7TA 1VE2A 2E17A 2PCAA 3ZGNA 3ZGLA 5HW4A 2EJJA 2EK2A 2EMUA 2P5FA 2PB6A 2PB5A 3SZOA 2DXWA 2OWVA 2P6LA 2P5CA 1V9AA 3NDCA 3KELA 1WYZA 3LMMA 1PJQA 2DXXA 2E07A 2DSHA 2ZVCA 4MUYA 2EGLA 2DXVA 2EK4A 2E08A 3URKA 3FFYA 2EL1A 2OWGA 2EGSA 1CBFA 3KEMA 2EJKA 2EJZA 2E4RA 2P9DA 4MV5A 2EMRA 3TIXB 2EH2A 3KEFA 2HUXA 2E0NA 2PCGA 3KWPA 1VHVA 2EHCA 2E7RA 3FQ6A 2EN5A 2EL2A 3UV3A 2PCMA 2BB3A 2ENIA 2E8SA 2E8HA 2P2XA 3T0GA 3SZLA 2E4NA 1WNGA 1VCEA 2QBUA 2Z6RA 4H4EA 2DSIA 2ED5A 1S4DA 2PCIA 2ZVBA 2E8QA 2OWKA 2EKAA 2EEQA 2DEKA 2E8RA 3NUTA 2E0KA 3ND1A 1PJSA 2DV3A 4MV0A 1WDEA 2EK3A 3T0FA 2PCHA 2EH4A 2EHLA 2EH5A 2EL0A 2EK7A 2HR8A 2YBQA 4H4DA 2NPNA 2DSGA 2PB4A 2DV7A 3UV6A 2ED3A 2HUTA 1VA0A 2DV4A 3HH1A 4E16A 3UTDA 2KYYA 3UV7A 3KE8A 2CBFA 3UTCA 3DNFA
chains in the Genus database with same CATH topology
3SZUA 4MUXA 2E15A 2E16A 2HUQA 2P6DA 2OWFA 2ELDA 3KE9A 2PCKA 2P6KA 2EGBA 2P6IA 2ELEA 3UWMA 4N7BA 2EL3A 4H4CA 2OWUA 2DV5A 3I4TA 2YBOA 1PJTA 4EB3A 2HUVA 3NEIA 3F7TA 1VE2A 2E17A 2PCAA 3ZGNA 3ZGLA 5HW4A 2EJJA 2EK2A 2EMUA 2P5FA 2PB6A 2PB5A 3SZOA 2DXWA 2OWVA 2P6LA 2P5CA 1V9AA 3NDCA 3KELA 1WYZA 3LMMA 1PJQA 2DXXA 2E07A 2DSHA 2ZVCA 4MUYA 2EGLA 2DXVA 2EK4A 2E08A 3URKA 3FFYA 2EL1A 2OWGA 2EGSA 1CBFA 3KEMA 2EJKA 2EJZA 2E4RA 2P9DA 4MV5A 2EMRA 3TIXB 2EH2A 3KEFA 2HUXA 2E0NA 2PCGA 3KWPA 1VHVA 2EHCA 2E7RA 3FQ6A 2EN5A 2EL2A 3UV3A 2PCMA 2BB3A 2ENIA 2E8SA 2E8HA 2P2XA 3T0GA 3SZLA 2E4NA 1WNGA 1VCEA 2QBUA 2Z6RA 4H4EA 2DSIA 2ED5A 1S4DA 2PCIA 2ZVBA 2E8QA 2OWKA 2EKAA 2EEQA 2DEKA 2E8RA 3NUTA 2E0KA 3ND1A 1PJSA 2DV3A 4MV0A 1WDEA 2EK3A 3T0FA 2PCHA 2EH4A 2EHLA 2EH5A 2EL0A 2EK7A 2HR8A 2YBQA 4H4DA 2NPNA 2DSGA 2PB4A 2DV7A 3UV6A 2ED3A 2HUTA 1VA0A 2DV4A 3HH1A 4E16A 3UTDA 2KYYA 3UV7A 3KE8A 2CBFA 3UTCA 3DNFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E15 A;  2E16 A;  2HUQ A;  2P6D A;  2OWF A;  2ELD A;  2PCK A;  2P6K A;  2EGB A;  2P6I A;  2ELE A;  2EL3 A;  2OWU A;  2DV5 A;  3I4T A;  2YBO A;  1PJT A;  2HUV A;  3NEI A;  1VE2 A;  2E17 A;  2PCA A;  5HW4 A;  2EJJ A;  2EK2 A;  2EMU A;  2P5F A;  2PB6 A;  2PB5 A;  2DXW A;  2OWV A;  2P6L A;  2P5C A;  1V9A A;  3NDC A;  1WYZ A;  1PJQ A;  2DXX A;  2E07 A;  2DSH A;  2ZVC A;  2EGL A;  2DXV A;  2EK4 A;  2E08 A;  3FFY A;  2EL1 A;  2OWG A;  2EGS A;  1CBF A;  2EJK A;  2EJZ A;  2E4R A;  2P9D A;  2EMR A;  2EH2 A;  2HUX A;  2E0N A;  2PCG A;  3KWP A;  1VHV A;  2EHC A;  2E7R A;  3FQ6 A;  2EN5 A;  2EL2 A;  2PCM A;  2BB3 A;  2ENI A;  2E8S A;  2E8H A;  2P2X A;  2E4N A;  1WNG A;  1VCE A;  2QBU A;  2Z6R A;  2DSI A;  2ED5 A;  1S4D A;  2PCI A;  2ZVB A;  2E8Q A;  2OWK A;  2EKA A;  2EEQ A;  2DEK A;  2E8R A;  3NUT A;  2E0K A;  3ND1 A;  1PJS A;  2DV3 A;  1WDE A;  2EK3 A;  2PCH A;  2EH4 A;  2EHL A;  2EH5 A;  2EL0 A;  2EK7 A;  2HR8 A;  2YBQ A;  2NPN A;  2DSG A;  2PB4 A;  2DV7 A;  2ED3 A;  2HUT A;  1VA0 A;  2DV4 A;  3HH1 A;  4E16 A;  2CBF A; 
#chains in the Genus database with same CATH topology
 3SZU A;  4MUX A;  2E15 A;  2E16 A;  2HUQ A;  2P6D A;  2OWF A;  2ELD A;  3KE9 A;  2PCK A;  2P6K A;  2EGB A;  2P6I A;  2ELE A;  3UWM A;  4N7B A;  2EL3 A;  4H4C A;  2OWU A;  2DV5 A;  3I4T A;  2YBO A;  1PJT A;  4EB3 A;  2HUV A;  3NEI A;  3F7T A;  1VE2 A;  2E17 A;  2PCA A;  3ZGN A;  3ZGL A;  5HW4 A;  2EJJ A;  2EK2 A;  2EMU A;  2P5F A;  2PB6 A;  2PB5 A;  3SZO A;  2DXW A;  2OWV A;  2P6L A;  2P5C A;  1V9A A;  3NDC A;  3KEL A;  1WYZ A;  3LMM A;  1PJQ A;  2DXX A;  2E07 A;  2DSH A;  2ZVC A;  4MUY A;  2EGL A;  2DXV A;  2EK4 A;  2E08 A;  3URK A;  3FFY A;  2EL1 A;  2OWG A;  2EGS A;  1CBF A;  3KEM A;  2EJK A;  2EJZ A;  2E4R A;  2P9D A;  4MV5 A;  2EMR A;  3TIX B;  2EH2 A;  3KEF A;  2HUX A;  2E0N A;  2PCG A;  3KWP A;  1VHV A;  2EHC A;  2E7R A;  3FQ6 A;  2EN5 A;  2EL2 A;  3UV3 A;  2PCM A;  2BB3 A;  2ENI A;  2E8S A;  2E8H A;  2P2X A;  3T0G A;  3SZL A;  2E4N A;  1WNG A;  1VCE A;  2QBU A;  2Z6R A;  4H4E A;  2DSI A;  2ED5 A;  1S4D A;  2PCI A;  2ZVB A;  2E8Q A;  2OWK A;  2EKA A;  2EEQ A;  2DEK A;  2E8R A;  3NUT A;  2E0K A;  3ND1 A;  1PJS A;  2DV3 A;  4MV0 A;  1WDE A;  2EK3 A;  3T0F A;  2PCH A;  2EH4 A;  2EHL A;  2EH5 A;  2EL0 A;  2EK7 A;  2HR8 A;  2YBQ A;  4H4D A;  2NPN A;  2DSG A;  2PB4 A;  2DV7 A;  3UV6 A;  2ED3 A;  2HUT A;  1VA0 A;  2DV4 A;  3HH1 A;  4E16 A;  3UTD A;  2KYY A;  3UV7 A;  3KE8 A;  2CBF A;  3UTC A;  3DNF A; 
#chains in the Genus database with same CATH homology
 3SZU A;  4MUX A;  2E15 A;  2E16 A;  2HUQ A;  2P6D A;  2OWF A;  2ELD A;  3KE9 A;  2PCK A;  2P6K A;  2EGB A;  2P6I A;  2ELE A;  3UWM A;  4N7B A;  2EL3 A;  4H4C A;  2OWU A;  2DV5 A;  3I4T A;  2YBO A;  1PJT A;  4EB3 A;  2HUV A;  3NEI A;  3F7T A;  1VE2 A;  2E17 A;  2PCA A;  3ZGN A;  3ZGL A;  5HW4 A;  2EJJ A;  2EK2 A;  2EMU A;  2P5F A;  2PB6 A;  2PB5 A;  3SZO A;  2DXW A;  2OWV A;  2P6L A;  2P5C A;  1V9A A;  3NDC A;  3KEL A;  1WYZ A;  3LMM A;  1PJQ A;  2DXX A;  2E07 A;  2DSH A;  2ZVC A;  4MUY A;  2EGL A;  2DXV A;  2EK4 A;  2E08 A;  3URK A;  3FFY A;  2EL1 A;  2OWG A;  2EGS A;  1CBF A;  3KEM A;  2EJK A;  2EJZ A;  2E4R A;  2P9D A;  4MV5 A;  2EMR A;  3TIX B;  2EH2 A;  3KEF A;  2HUX A;  2E0N A;  2PCG A;  3KWP A;  1VHV A;  2EHC A;  2E7R A;  3FQ6 A;  2EN5 A;  2EL2 A;  3UV3 A;  2PCM A;  2BB3 A;  2ENI A;  2E8S A;  2E8H A;  2P2X A;  3T0G A;  3SZL A;  2E4N A;  1WNG A;  1VCE A;  2QBU A;  2Z6R A;  4H4E A;  2DSI A;  2ED5 A;  1S4D A;  2PCI A;  2ZVB A;  2E8Q A;  2OWK A;  2EKA A;  2EEQ A;  2DEK A;  2E8R A;  3NUT A;  2E0K A;  3ND1 A;  1PJS A;  2DV3 A;  4MV0 A;  1WDE A;  2EK3 A;  3T0F A;  2PCH A;  2EH4 A;  2EHL A;  2EH5 A;  2EL0 A;  2EK7 A;  2HR8 A;  2YBQ A;  4H4D A;  2NPN A;  2DSG A;  2PB4 A;  2DV7 A;  3UV6 A;  2ED3 A;  2HUT A;  1VA0 A;  2DV4 A;  3HH1 A;  4E16 A;  3UTD A;  2KYY A;  3UV7 A;  3KE8 A;  2CBF A;  3UTC A;  3DNF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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