2PGSA

Crystal structure of a putative deoxyguanosinetriphosphate triphosphohydrolase from pseudomonas syringae pv. phaseolicola 1448a
Total Genus 134
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
134
sequence length
437
structure length
393
Chain Sequence
SLDWQTLLNRERLPFHKDHDRIIFSGAFRRLGRKTQVHPHTRLTHSLEVSCVGRSLGMRVGETLRAALPDWCDPSDLGMVVQSACLAHDIGNPPFGHSGEDAIRNWFNQAAGRGWLDAMSETERNDFLNFEGNAQGFRVLTQLEYHQFDGGTRLTYATLGTYLKYPWTARKHKFGCYQSELPILEQIAGKLGLPQLEEQRWARHPLVYLMEAADDICYALIDLEDGLEMDLLDYAEVESLLLGLVGRRKLAILRGKAIEHLTNAAARAFVEQQDALLAGTLPGDLVEHMHGPAKRCVLNAKDMARKKIFQDKRKTLHEIGAYTTLEILLNAFCGAAVEQFGGRTPSFKHRRILDLLGNSAPDPKAPLHASFLRMIDFIAGMTDSYASEMAREM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Putative deoxyguanosinetriphosphate triphosphohydrolase
publication title Crystal structure of a putative deoxyguanosinetriphosphate triphosphohydrolase from Pseudomonas syringae pv. phaseolicola 1448A at 2.35 A resolution
rcsb
source organism Pseudomonas syringae pv. phaseolicola 1448a
total genus 134
structure length 393
sequence length 437
ec nomenclature
pdb deposition date 2007-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01966 HD HD domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3210.10 Mainly Alpha Orthogonal Bundle Hypothetical protein af1432 Hypothetical protein af1432 2pgsA01
1.10.3410.10 Mainly Alpha Orthogonal Bundle putative deoxyguanosinetriphosphate triphosphohydrolase fold putative deoxyguanosinetriphosphate triphosphohydrolase like domain 2pgsA03
1.10.3550.10 Mainly Alpha Orthogonal Bundle eoxyguanosinetriphosphate triphosphohydrolase fold eoxyguanosinetriphosphate triphosphohydrolase domain-like 2pgsA02
2CQZA 4TNPA 4L7WA 4TO1A 5TK8A 3BG2A 5AO1A 3HC1A 5TKAA 5TK9A 4QG2A 2PQ7A 5AO2A 4TO0A 1XX7A 4L1JA 4TO4A 4TO6A 3U1NA 3TMBA 2PGSA 2O08A 4Q7HA 2FLOA 4RXSA 3KH1A 1VJ7A 4RXRA 3TMCA 4TNXA 4ZWEA 1YOYA 4TO5A 3MEMA 3LJXA 2PARA 5AO4A 4QFZA 1YNBA 2OGIA 4QG0A 4TO3A 4QFYA 4QG4A 1U6ZA 4TNYA 3CCGA 3MZOA 3TM8A 4TO2A 4RXQA 5TK7A 4TNQA 3HI0A 4XDSA 3IRHA 4MCWA 4X9EA 5AO3A 4TNZA 5AO0A 3RF0A 4BZBA 3NR1A 4LRLA 4RXOA 4MLMA 2Q14A 3P3QA 4MLNA 4ME4A 2PAQA 2GZ4A 4TNRA 4ZWGA 4BZCA 4RXPA 4QG1A 4DMBA 2O6IA 4MZ7A 4N71A 1VQRA 3NQWA 4L7EA 2DQBA 3TMDA 2PAUA 4MDZA 4N6WA 3M1TA 3I7AA 5TK6A 4R8ZA 4QFXA 2HEKA 4L1JB
chains in the Genus database with same CATH superfamily
2CQZA 4TNPA 4L7WA 4TO1A 5TK8A 3BG2A 5AO1A 3HC1A 4QQWA 2C5UA 5TKAA 5TK9A 4QG2A 4Q2DA 2PQ7A 5AO2A 3S4LA 4TO0A 1XX7A 4L1JA 4TO4A 4TO6A 3U1NA 3TMBA 2PGSA 2O08A 4Q7HA 2FLOA 4RXSA 3KH1A 1VJ7A 4RXRA 3TMCA 4TNXA 4ZWEA 1YOYA 4TO5A 3MEMA 3LJXA 2PARA 5AO4A 4QFZA 3SK9A 1YNBA 2OGIA 4QG0A 4TO3A 4QFYA 4QG4A 1U6ZA 4TNYA 3GW7A 3CCGA 3MZOA 3TM8A 4TO2A 4RXQA 5TK7A 4TNQA 3HI0A 4XDSA 3IRHA 4MCWA 4X9EA 5AO3A 4TNZA 5AO0A 3KQ5A 3RF0A 4BZBA 3NR1A 4LRLA 4RXOA 4MLMA 2Q14A 3P3QA 4MLNA 4QQYA 4QQXA 4ME4A 2PAQA 4QQZA 2GZ4A 4TNRA 4ZWGA 4BZCA 4RXPA 4QG1A 4DMBA 2O6IA 4MZ7A 4N71A 4Q2CA 1VQRA 3NQWA 4L7EA 2DQBA 3TMDA 2PAUA 4MDZA 3SKDA 4N6WA 3M1TA 3I7AA 5TK6A 4R8ZA 4QFXA 2HEKA 4L1JB
chains in the Genus database with same CATH topology
2CQZA 4TNPA 4L7WA 4TO1A 5TK8A 3BG2A 5AO1A 3HC1A 4QQWA 5TKAA 5TK9A 4QG2A 4Q2DA 2PQ7A 5AO2A 3S4LA 4TO0A 1XX7A 4L1JA 4TO4A 4TO6A 3U1NA 3TMBA 2PGSA 2O08A 4Q7HA 2FLOA 4RXSA 3KH1A 1VJ7A 4RXRA 3TMCA 4TNXA 4ZWEA 1YOYA 4TO5A 3MEMA 3LJXA 2PARA 5AO4A 4QFZA 3SK9A 1YNBA 2OGIA 4QG0A 4TO3A 4QFYA 4QG4A 1U6ZA 4TNYA 3GW7A 3CCGA 3MZOA 3TM8A 4TO2A 4RXQA 5TK7A 4TNQA 3HI0A 4XDSA 3IRHA 4MCWA 4X9EA 5AO3A 4TNZA 5AO0A 3KQ5A 3RF0A 4BZBA 3NR1A 4LRLA 4RXOA 4MLMA 2Q14A 3P3QA 4MLNA 4QQYA 4QQXA 4ME4A 2PAQA 4QQZA 2GZ4A 4TNRA 4ZWGA 4BZCA 4RXPA 4QG1A 4DMBA 2O6IA 4MZ7A 4N71A 4Q2CA 1VQRA 3NQWA 4L7EA 2DQBA 3TMDA 2PAUA 4MDZA 3SKDA 4N6WA 3M1TA 3I7AA 5TK6A 4R8ZA 4QFXA 2HEKA 4L1JB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CQZ A;  4TNP A;  4L7W A;  4TO1 A;  5TK8 A;  3BG2 A;  5AO1 A;  3HC1 A;  5TKA A;  5TK9 A;  4QG2 A;  2PQ7 A;  5AO2 A;  4TO0 A;  1XX7 A;  4L1J A;  4TO4 A;  4TO6 A;  3U1N A;  3TMB A;  2PGS A;  2O08 A;  4Q7H A;  2FLO A;  4RXS A;  3KH1 A;  1VJ7 A;  4RXR A;  3TMC A;  4TNX A;  4ZWE A;  1YOY A;  4TO5 A;  3MEM A;  3LJX A;  2PAR A;  5AO4 A;  4QFZ A;  1YNB A;  2OGI A;  4QG0 A;  4TO3 A;  4QFY A;  4QG4 A;  1U6Z A;  4TNY A;  3CCG A;  3MZO A;  3TM8 A;  4TO2 A;  4RXQ A;  5TK7 A;  4TNQ A;  3HI0 A;  4XDS A;  3IRH A;  4MCW A;  4X9E A;  5AO3 A;  4TNZ A;  5AO0 A;  3RF0 A;  4BZB A;  3NR1 A;  4LRL A;  4RXO A;  4MLM A;  2Q14 A;  3P3Q A;  4MLN A;  4ME4 A;  2PAQ A;  2GZ4 A;  4TNR A;  4ZWG A;  4BZC A;  4RXP A;  4QG1 A;  4DMB A;  2O6I A;  4MZ7 A;  4N71 A;  1VQR A;  3NQW A;  4L7E A;  2DQB A;  3TMD A;  2PAU A;  4MDZ A;  4N6W A;  3M1T A;  3I7A A;  5TK6 A;  4R8Z A;  4QFX A;  2HEK A;  4L1J B; 
#chains in the Genus database with same CATH topology
 2CQZ A;  4TNP A;  4L7W A;  4TO1 A;  5TK8 A;  3BG2 A;  5AO1 A;  3HC1 A;  4QQW A;  2C5U A;  5TKA A;  5TK9 A;  4QG2 A;  4Q2D A;  2PQ7 A;  5AO2 A;  3S4L A;  4TO0 A;  1XX7 A;  4L1J A;  4TO4 A;  4TO6 A;  3U1N A;  3TMB A;  2PGS A;  2O08 A;  4Q7H A;  2FLO A;  4RXS A;  3KH1 A;  1VJ7 A;  4RXR A;  3TMC A;  4TNX A;  4ZWE A;  1YOY A;  4TO5 A;  3MEM A;  3LJX A;  2PAR A;  5AO4 A;  4QFZ A;  3SK9 A;  1YNB A;  2OGI A;  4QG0 A;  4TO3 A;  4QFY A;  4QG4 A;  1U6Z A;  4TNY A;  3GW7 A;  3CCG A;  3MZO A;  3TM8 A;  4TO2 A;  4RXQ A;  5TK7 A;  4TNQ A;  3HI0 A;  4XDS A;  3IRH A;  4MCW A;  4X9E A;  5AO3 A;  4TNZ A;  5AO0 A;  3KQ5 A;  3RF0 A;  4BZB A;  3NR1 A;  4LRL A;  4RXO A;  4MLM A;  2Q14 A;  3P3Q A;  4MLN A;  4QQY A;  4QQX A;  4ME4 A;  2PAQ A;  4QQZ A;  2GZ4 A;  4TNR A;  4ZWG A;  4BZC A;  4RXP A;  4QG1 A;  4DMB A;  2O6I A;  4MZ7 A;  4N71 A;  4Q2C A;  1VQR A;  3NQW A;  4L7E A;  2DQB A;  3TMD A;  2PAU A;  4MDZ A;  3SKD A;  4N6W A;  3M1T A;  3I7A A;  5TK6 A;  4R8Z A;  4QFX A;  2HEK A;  4L1J B; 
#chains in the Genus database with same CATH homology
 2CQZ A;  4TNP A;  4L7W A;  4TO1 A;  5TK8 A;  3BG2 A;  5AO1 A;  3HC1 A;  4QQW A;  5TKA A;  5TK9 A;  4QG2 A;  4Q2D A;  2PQ7 A;  5AO2 A;  3S4L A;  4TO0 A;  1XX7 A;  4L1J A;  4TO4 A;  4TO6 A;  3U1N A;  3TMB A;  2PGS A;  2O08 A;  4Q7H A;  2FLO A;  4RXS A;  3KH1 A;  1VJ7 A;  4RXR A;  3TMC A;  4TNX A;  4ZWE A;  1YOY A;  4TO5 A;  3MEM A;  3LJX A;  2PAR A;  5AO4 A;  4QFZ A;  3SK9 A;  1YNB A;  2OGI A;  4QG0 A;  4TO3 A;  4QFY A;  4QG4 A;  1U6Z A;  4TNY A;  3GW7 A;  3CCG A;  3MZO A;  3TM8 A;  4TO2 A;  4RXQ A;  5TK7 A;  4TNQ A;  3HI0 A;  4XDS A;  3IRH A;  4MCW A;  4X9E A;  5AO3 A;  4TNZ A;  5AO0 A;  3KQ5 A;  3RF0 A;  4BZB A;  3NR1 A;  4LRL A;  4RXO A;  4MLM A;  2Q14 A;  3P3Q A;  4MLN A;  4QQY A;  4QQX A;  4ME4 A;  2PAQ A;  4QQZ A;  2GZ4 A;  4TNR A;  4ZWG A;  4BZC A;  4RXP A;  4QG1 A;  4DMB A;  2O6I A;  4MZ7 A;  4N71 A;  4Q2C A;  1VQR A;  3NQW A;  4L7E A;  2DQB A;  3TMD A;  2PAU A;  4MDZ A;  3SKD A;  4N6W A;  3M1T A;  3I7A A;  5TK6 A;  4R8Z A;  4QFX A;  2HEK A;  4L1J B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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