2PH9A

Galanthamine bound to an ach-binding protein
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
215
structure length
213
Chain Sequence
DDDDKLHSQANLMRLKSDLFNRSYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERRA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Choline-binding protein
molecule keywords Soluble acetylcholine receptor
publication title Galanthamine and non-competitive inhibitor binding to ACh-binding protein: evidence for a binding site on non-alpha-subunit interfaces of heteromeric neuronal nicotinic receptors.
pubmed doi rcsb
source organism Aplysia californica
total genus 52
structure length 213
sequence length 215
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2007-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 2ph9A00
3WTNA 3JADA 3JAEA 3WTIA 4UY2A 2XNTA 2XYTA 2XZ6A 3ZDGA 3C84A 2PH9A 4TWFA 4TNWA 3TLTA 5L47A 2BYPA 4XHEA 3UU5A 2ZJVA 4UXUA 3GUAA 5AFKA 3ZKRA 4HFHA 4EZ1A 3C79A 4LMKA 2YOEA 2XQ9A 4LMLA 4D01A 1UW6A 4IREA 3RQUA 4ALXA 2W8GA 5HEHA 2XQ3A 4QH5A 2BG9E 1I9BA 2WNCA 4NZBA 3UU4A 3WIPA 5L4EA 3UU8A 4Z90A 2X00D 4UM3A 5HCMA 5AFHA 5AFNA 5CO5A 5J5IA 3WTHA 3P50A 2Y54A 2XNVA 2WNLA 4PIRA 2XQ5A 3TLUA 2BG9B 3WTKA 3WTOA 2YN6A 4IL4A 4ZJSA 2WN9A 4TWDA 4QACA 3LSVA 2XZ5A 2WZYA 4UM1A 3TLSA 3UQ4A 5HEUA 2XQ6A 3EI0A 2BG9A 4A97A 4F8HA 4FRRA 4NPPA 3ZDHA 3U8JA 2BYRA 4UM3P 3UU3A 2BR8A 4ZR6A 4X5TA 5BRXA 5AFJA 4AFHA 2YMDA 4HFDA 4XK9A 4QH1A 3SQ9A 4ILAA 3U8KA 4B5DA 5TVCA 5HEOA 3RQWA 4ZK1A 4ZRUA 5FJVA 3SIOA 2XQ4A 2BYNA 3EAMA 2BR7A 5J0ZA 2YMEA 3SQ6A 5AINA 3T4MA 3SH1A 2XQAA 2C9TA 2X00A 4ILCA 3PMZA 4HFEA 3U8LA 3UU6A 4DBMA 5J5FA 5KZUA 5HEGA 5CFBA 2XQ8A 3IGQA 4HQPA 3U8MA 5LG3A 1UV6A 5JMEA 3RHWA 3RI5A 1UX2A 2W8FA 3PEOA 2PGZA 4ZZCA 2VL0A 5L4HA 3WTJA 2BG9C 5J5HA 3RIFA 5KE4A 5AFMB 2XQ7A 2WNJA 5J5GA 2ZJUA 5SYOA 4HFCA 4BFQA 2BYSA 3WTMA 2Y56A 2UZ6A 2BYQA 5AFMA 4QABA 4QH4A 4COFA 5IUXA 3RIAA 5LXBA 4TNVA 3P4WA 4WV9A 4LMJA 2Y57A 5AFLA 2YKSA 4HFBA 4HFIA 3EHZA 4Z91A 5HEJA 2XNUA 5BW2A 3U8NA 2Y58A 5HCJA 4AFGA 4ILBA 3TLVA 3TLWA 4BQTA 4UM3S 3JAFA 4QAAA 4AFTA 3UQ7A 2XYSA 4ZK4A 4IL9A 4ZZBA 4TWHA 4ZJTA 2Y7YA 4A98A 3WTLA 3UUBA 2BJ0A 2QC1B 5BP0A
chains in the Genus database with same CATH superfamily
3WTNA 3JADA 3JAEA 3WTIA 4UY2A 2XNTA 2XYTA 2XZ6A 3ZDGA 3C84A 2PH9A 4TWFA 4TNWA 3TLTA 5L47A 2BYPA 4XHEA 3UU5A 2ZJVA 4UXUA 3GUAA 5AFKA 3ZKRA 4HFHA 4EZ1A 3C79A 4LMKA 2YOEA 2XQ9A 4LMLA 4D01A 1UW6A 4IREA 3RQUA 4ALXA 2W8GA 5HEHA 2XQ3A 4QH5A 2BG9E 1I9BA 2WNCA 4NZBA 3UU4A 3WIPA 5L4EA 3UU8A 4Z90A 2X00D 4UM3A 5HCMA 5AFHA 5AFNA 5CO5A 5J5IA 3WTHA 3P50A 2Y54A 2XNVA 2WNLA 4PIRA 2XQ5A 3TLUA 2BG9B 3WTKA 3WTOA 2YN6A 4IL4A 4ZJSA 2WN9A 4TWDA 4QACA 3LSVA 2XZ5A 2WZYA 4UM1A 3TLSA 3UQ4A 5HEUA 2XQ6A 3EI0A 2BG9A 4A97A 4F8HA 4FRRA 4NPPA 3ZDHA 3U8JA 2BYRA 4UM3P 3UU3A 2BR8A 4ZR6A 4X5TA 5BRXA 5AFJA 4AFHA 2YMDA 4HFDA 4XK9A 4QH1A 3SQ9A 4ILAA 3U8KA 4B5DA 5TVCA 5HEOA 3RQWA 4ZK1A 4ZRUA 5FJVA 3SIOA 2XQ4A 2BYNA 3EAMA 2BR7A 5J0ZA 2YMEA 3SQ6A 5AINA 3T4MA 3SH1A 2XQAA 2C9TA 2X00A 4ILCA 3PMZA 4HFEA 3U8LA 3UU6A 4DBMA 5J5FA 5KZUA 5HEGA 5CFBA 2XQ8A 3IGQA 4HQPA 3U8MA 5LG3A 1UV6A 5JMEA 3RHWA 3RI5A 1UX2A 2W8FA 3PEOA 2PGZA 4ZZCA 2VL0A 5L4HA 3WTJA 2BG9C 5J5HA 3RIFA 5KE4A 5AFMB 2XQ7A 2WNJA 5J5GA 2ZJUA 5SYOA 4HFCA 4BFQA 2BYSA 3WTMA 2Y56A 2UZ6A 2BYQA 5AFMA 4QABA 4QH4A 4COFA 5IUXA 3RIAA 5LXBA 4TNVA 3P4WA 4WV9A 4LMJA 2Y57A 5AFLA 2YKSA 4HFBA 4HFIA 3EHZA 4Z91A 5HEJA 2XNUA 5BW2A 3U8NA 2Y58A 5HCJA 4AFGA 4ILBA 3TLVA 3TLWA 4BQTA 4UM3S 3JAFA 4QAAA 4AFTA 3UQ7A 2XYSA 4ZK4A 4IL9A 4ZZBA 4TWHA 4ZJTA 2Y7YA 4A98A 3WTLA 3UUBA 2BJ0A 2QC1B 5BP0A
chains in the Genus database with same CATH topology
3WTNA 3JADA 3JAEA 3WTIA 4UY2A 2XNTA 2XYTA 2XZ6A 3ZDGA 3C84A 2PH9A 4TWFA 4TNWA 3TLTA 5L47A 2BYPA 4XHEA 3UU5A 2ZJVA 4UXUA 3GUAA 5AFKA 3ZKRA 4HFHA 4EZ1A 3C79A 4LMKA 2YOEA 2XQ9A 4LMLA 4D01A 1UW6A 4IREA 3RQUA 4ALXA 2W8GA 5HEHA 2XQ3A 4QH5A 2BG9E 1I9BA 2WNCA 4NZBA 3UU4A 3WIPA 5L4EA 3UU8A 4Z90A 2X00D 4UM3A 5HCMA 5AFHA 5AFNA 5CO5A 5J5IA 3WTHA 3P50A 2Y54A 2XNVA 2WNLA 4PIRA 2XQ5A 3TLUA 2BG9B 3WTKA 3WTOA 2YN6A 4IL4A 4ZJSA 2WN9A 4TWDA 4QACA 3LSVA 2XZ5A 2WZYA 4UM1A 3TLSA 3UQ4A 5HEUA 2XQ6A 3EI0A 2BG9A 4A97A 4F8HA 4FRRA 4NPPA 3ZDHA 3U8JA 2BYRA 4UM3P 3UU3A 2BR8A 4ZR6A 4X5TA 5BRXA 5AFJA 4AFHA 2YMDA 4HFDA 4XK9A 4QH1A 3SQ9A 4ILAA 3U8KA 4B5DA 5TVCA 5HEOA 3RQWA 4ZK1A 4ZRUA 5FJVA 3SIOA 2XQ4A 2BYNA 3EAMA 2BR7A 5J0ZA 2YMEA 3SQ6A 5AINA 3T4MA 3SH1A 2XQAA 2C9TA 2X00A 4ILCA 3PMZA 4HFEA 3U8LA 3UU6A 4DBMA 5J5FA 5KZUA 5HEGA 5CFBA 2XQ8A 3IGQA 4HQPA 3U8MA 5LG3A 1UV6A 5JMEA 3RHWA 3RI5A 1UX2A 2W8FA 3PEOA 2PGZA 4ZZCA 2VL0A 5L4HA 3WTJA 2BG9C 5J5HA 3RIFA 5KE4A 5AFMB 2XQ7A 2WNJA 5J5GA 2ZJUA 5SYOA 4HFCA 4BFQA 2BYSA 3WTMA 2Y56A 2UZ6A 2BYQA 5AFMA 4QABA 4QH4A 4COFA 5IUXA 3RIAA 5LXBA 4TNVA 3P4WA 4WV9A 4LMJA 2Y57A 5AFLA 2YKSA 4HFBA 4HFIA 3EHZA 4Z91A 5HEJA 2XNUA 5BW2A 3U8NA 2Y58A 5HCJA 4AFGA 4ILBA 3TLVA 3TLWA 4BQTA 4UM3S 3JAFA 4QAAA 4AFTA 3UQ7A 2XYSA 4ZK4A 4IL9A 4ZZBA 4TWHA 4ZJTA 2Y7YA 4A98A 3WTLA 3UUBA 2BJ0A 2QC1B 5BP0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WTN A;  3JAD A;  3JAE A;  3WTI A;  4UY2 A;  2XNT A;  2XYT A;  2XZ6 A;  3ZDG A;  3C84 A;  2PH9 A;  4TWF A;  4TNW A;  3TLT A;  5L47 A;  2BYP A;  4XHE A;  3UU5 A;  2ZJV A;  4UXU A;  3GUA A;  5AFK A;  3ZKR A;  4HFH A;  4EZ1 A;  3C79 A;  4LMK A;  2YOE A;  2XQ9 A;  4LML A;  4D01 A;  1UW6 A;  4IRE A;  3RQU A;  4ALX A;  2W8G A;  5HEH A;  2XQ3 A;  4QH5 A;  2BG9 E;  1I9B A;  2WNC A;  4NZB A;  3UU4 A;  3WIP A;  5L4E A;  3UU8 A;  4Z90 A;  2X00 D;  4UM3 A;  5HCM A;  5AFH A;  5AFN A;  5CO5 A;  5J5I A;  3WTH A;  3P50 A;  2Y54 A;  2XNV A;  2WNL A;  4PIR A;  2XQ5 A;  3TLU A;  2BG9 B;  3WTK A;  3WTO A;  2YN6 A;  4IL4 A;  4ZJS A;  2WN9 A;  4TWD A;  4QAC A;  3LSV A;  2XZ5 A;  2WZY A;  4UM1 A;  3TLS A;  3UQ4 A;  5HEU A;  2XQ6 A;  3EI0 A;  2BG9 A;  4A97 A;  4F8H A;  4FRR A;  4NPP A;  3ZDH A;  3U8J A;  2BYR A;  4UM3 P;  3UU3 A;  2BR8 A;  4ZR6 A;  4X5T A;  5BRX A;  5AFJ A;  4AFH A;  2YMD A;  4HFD A;  4XK9 A;  4QH1 A;  3SQ9 A;  4ILA A;  3U8K A;  4B5D A;  5TVC A;  5HEO A;  3RQW A;  4ZK1 A;  4ZRU A;  5FJV A;  3SIO A;  2XQ4 A;  2BYN A;  3EAM A;  2BR7 A;  5J0Z A;  2YME A;  3SQ6 A;  5AIN A;  3T4M A;  3SH1 A;  2XQA A;  2C9T A;  2X00 A;  4ILC A;  3PMZ A;  4HFE A;  3U8L A;  3UU6 A;  4DBM A;  5J5F A;  5KZU A;  5HEG A;  5CFB A;  2XQ8 A;  3IGQ A;  4HQP A;  3U8M A;  5LG3 A;  1UV6 A;  5JME A;  3RHW A;  3RI5 A;  1UX2 A;  2W8F A;  3PEO A;  2PGZ A;  4ZZC A;  2VL0 A;  5L4H A;  3WTJ A;  2BG9 C;  5J5H A;  3RIF A;  5KE4 A;  5AFM B;  2XQ7 A;  2WNJ A;  5J5G A;  2ZJU A;  5SYO A;  4HFC A;  4BFQ A;  2BYS A;  3WTM A;  2Y56 A;  2UZ6 A;  2BYQ A;  5AFM A;  4QAB A;  4QH4 A;  4COF A;  5IUX A;  3RIA A;  5LXB A;  4TNV A;  3P4W A;  4WV9 A;  4LMJ A;  2Y57 A;  5AFL A;  2YKS A;  4HFB A;  4HFI A;  3EHZ A;  4Z91 A;  5HEJ A;  2XNU A;  5BW2 A;  3U8N A;  2Y58 A;  5HCJ A;  4AFG A;  4ILB A;  3TLV A;  3TLW A;  4BQT A;  4UM3 S;  3JAF A;  4QAA A;  4AFT A;  3UQ7 A;  2XYS A;  4ZK4 A;  4IL9 A;  4ZZB A;  4TWH A;  4ZJT A;  2Y7Y A;  4A98 A;  3WTL A;  3UUB A;  2BJ0 A;  2QC1 B;  5BP0 A; 
#chains in the Genus database with same CATH topology
 3WTN A;  3JAD A;  3JAE A;  3WTI A;  4UY2 A;  2XNT A;  2XYT A;  2XZ6 A;  3ZDG A;  3C84 A;  2PH9 A;  4TWF A;  4TNW A;  3TLT A;  5L47 A;  2BYP A;  4XHE A;  3UU5 A;  2ZJV A;  4UXU A;  3GUA A;  5AFK A;  3ZKR A;  4HFH A;  4EZ1 A;  3C79 A;  4LMK A;  2YOE A;  2XQ9 A;  4LML A;  4D01 A;  1UW6 A;  4IRE A;  3RQU A;  4ALX A;  2W8G A;  5HEH A;  2XQ3 A;  4QH5 A;  2BG9 E;  1I9B A;  2WNC A;  4NZB A;  3UU4 A;  3WIP A;  5L4E A;  3UU8 A;  4Z90 A;  2X00 D;  4UM3 A;  5HCM A;  5AFH A;  5AFN A;  5CO5 A;  5J5I A;  3WTH A;  3P50 A;  2Y54 A;  2XNV A;  2WNL A;  4PIR A;  2XQ5 A;  3TLU A;  2BG9 B;  3WTK A;  3WTO A;  2YN6 A;  4IL4 A;  4ZJS A;  2WN9 A;  4TWD A;  4QAC A;  3LSV A;  2XZ5 A;  2WZY A;  4UM1 A;  3TLS A;  3UQ4 A;  5HEU A;  2XQ6 A;  3EI0 A;  2BG9 A;  4A97 A;  4F8H A;  4FRR A;  4NPP A;  3ZDH A;  3U8J A;  2BYR A;  4UM3 P;  3UU3 A;  2BR8 A;  4ZR6 A;  4X5T A;  5BRX A;  5AFJ A;  4AFH A;  2YMD A;  4HFD A;  4XK9 A;  4QH1 A;  3SQ9 A;  4ILA A;  3U8K A;  4B5D A;  5TVC A;  5HEO A;  3RQW A;  4ZK1 A;  4ZRU A;  5FJV A;  3SIO A;  2XQ4 A;  2BYN A;  3EAM A;  2BR7 A;  5J0Z A;  2YME A;  3SQ6 A;  5AIN A;  3T4M A;  3SH1 A;  2XQA A;  2C9T A;  2X00 A;  4ILC A;  3PMZ A;  4HFE A;  3U8L A;  3UU6 A;  4DBM A;  5J5F A;  5KZU A;  5HEG A;  5CFB A;  2XQ8 A;  3IGQ A;  4HQP A;  3U8M A;  5LG3 A;  1UV6 A;  5JME A;  3RHW A;  3RI5 A;  1UX2 A;  2W8F A;  3PEO A;  2PGZ A;  4ZZC A;  2VL0 A;  5L4H A;  3WTJ A;  2BG9 C;  5J5H A;  3RIF A;  5KE4 A;  5AFM B;  2XQ7 A;  2WNJ A;  5J5G A;  2ZJU A;  5SYO A;  4HFC A;  4BFQ A;  2BYS A;  3WTM A;  2Y56 A;  2UZ6 A;  2BYQ A;  5AFM A;  4QAB A;  4QH4 A;  4COF A;  5IUX A;  3RIA A;  5LXB A;  4TNV A;  3P4W A;  4WV9 A;  4LMJ A;  2Y57 A;  5AFL A;  2YKS A;  4HFB A;  4HFI A;  3EHZ A;  4Z91 A;  5HEJ A;  2XNU A;  5BW2 A;  3U8N A;  2Y58 A;  5HCJ A;  4AFG A;  4ILB A;  3TLV A;  3TLW A;  4BQT A;  4UM3 S;  3JAF A;  4QAA A;  4AFT A;  3UQ7 A;  2XYS A;  4ZK4 A;  4IL9 A;  4ZZB A;  4TWH A;  4ZJT A;  2Y7Y A;  4A98 A;  3WTL A;  3UUB A;  2BJ0 A;  2QC1 B;  5BP0 A; 
#chains in the Genus database with same CATH homology
 3WTN A;  3JAD A;  3JAE A;  3WTI A;  4UY2 A;  2XNT A;  2XYT A;  2XZ6 A;  3ZDG A;  3C84 A;  2PH9 A;  4TWF A;  4TNW A;  3TLT A;  5L47 A;  2BYP A;  4XHE A;  3UU5 A;  2ZJV A;  4UXU A;  3GUA A;  5AFK A;  3ZKR A;  4HFH A;  4EZ1 A;  3C79 A;  4LMK A;  2YOE A;  2XQ9 A;  4LML A;  4D01 A;  1UW6 A;  4IRE A;  3RQU A;  4ALX A;  2W8G A;  5HEH A;  2XQ3 A;  4QH5 A;  2BG9 E;  1I9B A;  2WNC A;  4NZB A;  3UU4 A;  3WIP A;  5L4E A;  3UU8 A;  4Z90 A;  2X00 D;  4UM3 A;  5HCM A;  5AFH A;  5AFN A;  5CO5 A;  5J5I A;  3WTH A;  3P50 A;  2Y54 A;  2XNV A;  2WNL A;  4PIR A;  2XQ5 A;  3TLU A;  2BG9 B;  3WTK A;  3WTO A;  2YN6 A;  4IL4 A;  4ZJS A;  2WN9 A;  4TWD A;  4QAC A;  3LSV A;  2XZ5 A;  2WZY A;  4UM1 A;  3TLS A;  3UQ4 A;  5HEU A;  2XQ6 A;  3EI0 A;  2BG9 A;  4A97 A;  4F8H A;  4FRR A;  4NPP A;  3ZDH A;  3U8J A;  2BYR A;  4UM3 P;  3UU3 A;  2BR8 A;  4ZR6 A;  4X5T A;  5BRX A;  5AFJ A;  4AFH A;  2YMD A;  4HFD A;  4XK9 A;  4QH1 A;  3SQ9 A;  4ILA A;  3U8K A;  4B5D A;  5TVC A;  5HEO A;  3RQW A;  4ZK1 A;  4ZRU A;  5FJV A;  3SIO A;  2XQ4 A;  2BYN A;  3EAM A;  2BR7 A;  5J0Z A;  2YME A;  3SQ6 A;  5AIN A;  3T4M A;  3SH1 A;  2XQA A;  2C9T A;  2X00 A;  4ILC A;  3PMZ A;  4HFE A;  3U8L A;  3UU6 A;  4DBM A;  5J5F A;  5KZU A;  5HEG A;  5CFB A;  2XQ8 A;  3IGQ A;  4HQP A;  3U8M A;  5LG3 A;  1UV6 A;  5JME A;  3RHW A;  3RI5 A;  1UX2 A;  2W8F A;  3PEO A;  2PGZ A;  4ZZC A;  2VL0 A;  5L4H A;  3WTJ A;  2BG9 C;  5J5H A;  3RIF A;  5KE4 A;  5AFM B;  2XQ7 A;  2WNJ A;  5J5G A;  2ZJU A;  5SYO A;  4HFC A;  4BFQ A;  2BYS A;  3WTM A;  2Y56 A;  2UZ6 A;  2BYQ A;  5AFM A;  4QAB A;  4QH4 A;  4COF A;  5IUX A;  3RIA A;  5LXB A;  4TNV A;  3P4W A;  4WV9 A;  4LMJ A;  2Y57 A;  5AFL A;  2YKS A;  4HFB A;  4HFI A;  3EHZ A;  4Z91 A;  5HEJ A;  2XNU A;  5BW2 A;  3U8N A;  2Y58 A;  5HCJ A;  4AFG A;  4ILB A;  3TLV A;  3TLW A;  4BQT A;  4UM3 S;  3JAF A;  4QAA A;  4AFT A;  3UQ7 A;  2XYS A;  4ZK4 A;  4IL9 A;  4ZZB A;  4TWH A;  4ZJT A;  2Y7Y A;  4A98 A;  3WTL A;  3UUB A;  2BJ0 A;  2QC1 B;  5BP0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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