2PHAA

Crystal structure of native, unliganded human arginase at 1.90 resolution
Total Genus 107
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
107
sequence length
314
structure length
314
Chain Sequence
SRTIGIIGAPFSKGQPRGGVEEGPTVLRKAGLLEKLKEQECDVKDYGDLPFADIPNDSPFQIVKNPRSVGKASEQLAGKVAEVKKNGRISLVLGGDHSLAIGSISGHARVHPDLGVIWVDAHTDINTPLTTTSGNLHGQPVSFLLKELKGKIPDVPGFSWVTPCISAKDIVYIGLRDVDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLLGRKKRPIHLSFDVDGLDPSFTPATGTPVVGGLTYREGLYITEEIYKTGLLSGLDIMEVNPSLGKTPEEVTRTVNTAVAITLACFGLAREGNHKPIDYL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Arginase-1
publication title Crystal structure of human arginase I complexed with thiosemicarbazide reveals an unusual thiocarbonyl mu-sulfide ligand in the binuclear manganese cluster.
pubmed doi rcsb
source organism Homo sapiens
total genus 107
structure length 314
sequence length 314
chains with identical sequence B
ec nomenclature ec 3.5.3.1: Arginase.
pdb deposition date 2007-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 2phaA00
1P8OA 4HXQA 3M1RA 3E6VA 4HWWA 1TBJA 1T4PA 3SKKA 4MYFA 3NIPA 4Q3SA 4MXRA 4Q3PA 4MYLA 3SL1A 1T4SA 1T5GA 1CEVA 2EF5A 4Q3QA 2EF4A 4MYKA 4Q3VA 1HQGA 3E9BA 4Q41A 3E8ZA 4IU5A 3E6KA 4HZEA 1P8QA 2AEBA 3PZLA 1P8SA 1TA1A 1TBLA 4IXVA 1T4TA 4RLAA 4RHMA 1WOIA 2CEVA 1HQ5A 3TF3A 4FCIA 4IE1A 3GN0A 5HJ9A 3KV2A 1ZPEA 4I06A 4IE2A 3LP7A 5CEVA 4G3HA 5RLAA 4Q3UA 1GQ7A 4IU1A 3SJTA 2A0MA 4Q40A 3F80A 4Q3RC 5HJAA 3MFWA 1RLAA 3THHA 4RHKA 1GQ6A 4GWCA 4GSVA 3THEA 2RLAA 1HQXA 4IU0A 1ZPGA 4GSMA 4IXUA 3TH7A 2PLLA 1WOGA 3LP4A 4DZ4A 3RLAA 3MFVA 1XFKA 1HQFA 4ITYA 4RHQA 4IU4A 4RHLA 3NIOA 4GSZA 3MJLA 1WVAA 4GWDA 1WVBA 3SL0A 4Q3TA 2PHOA 3E8QA 4MYNA 1HQHA 3MMRA 4RHJA 1WOHA 1TBHA 3GMZA 1PQ3A 1P8PA 2PHAA 3CEVA 4Q3RA 3DJ8A 3NIQA 4IE3A 4FCKA 1P8NA 1R1OA 2ZAVA 1T5FA 4Q42A 1T4RA 1P8MA 3THJA 1D3VA 1P8RA 4CEVA 2EIVA 4RHIA 3LHLA
chains in the Genus database with same CATH superfamily
4ZUMA 1P8OA 4CBTA 4HXQA 4BZ9A 3M1RA 3SFHA 3E6VA 4HWWA 1TBJA 5G12A 4A69A 4RN0A 1T4PA 3SKKA 3ZNSA 4QA4A 3C10A 5EFKB 5EEMA 4MYFA 5G13A 3NIPA 5G10A 4Q3SA 5D1DA 4MXRA 3MZ7A 4Q3PA 5DC5A 3MENA 4MYLA 4ZURA 3SL1A 2V5WA 5EFJD 1T4SA 1T5GA 1CEVA 5EENA 2EF5A 4RN2A 4Q3QA 3Q9BA 2EF4A 4MYKA 1C3RA 4Q3VA 4QA7A 1HQGA 3ZNRA 3E9BA 5EF8A 5THSA 3RQDA 4QA5A 5EFBD 4Q41A 3E8ZA 5EFNA 5G1AA 4IU5A 3EW8A 5FCWA 4LXZA 2VQWG 3C0YA 5IWGA 3E6KA 4HZEA 1P8QA 2GH6A 4BZ6A 4ZUPA 5DC8A 2AEBA 3PZLA 1P8SA 1TA1A 1ZZ0A 5G0XA 1TBLA 4IXVA 1T4TA 4RLAA 4QA6A 4RN1A 5JI5A 4RHMA 1WOIA 2CEVA 1HQ5A 5G0HA 3TF3A 4FCIA 1ZZ1A 4BZ7A 4IE1A 3GN0A 5HJ9A 2V5XA 1ZPEA 1VKGA 3KV2A 4I06A 3LP7A 4IE2A 3F06A 4BZ5A 3MAXA 4G3HA 5EEKA 4Q3UA 1GQ7A 5IX0A 4IU1A 5RLAA 3SJTA 3EZTA 1ZZ3A 1T67A 5G1BA 2A0MA 3F0RA 4Q40A 2VQJA 3F80A 4Q3RC 3SFFA 5HJAA 3MFWA 1RLAA 3THHA 1C3SA 4RHKA 1GQ6A 4ZUNA 4BKXB 4GWCA 5D1CA 3MZ4A 4GSVA 3THEA 2RLAA 2VQOA 5DC6A 1HQXA 5G0JA 4IU0A 1ZPGA 4ZUQA 5G0IA 4CBYA 3EWFA 4GSMA 4IXUA 4QA3A 5G17A 3TH7A 4LY1A 5EEFA 4ZUOA 2PLLA 1WOGA 3LP4A 4DZ4A 5G0YA 3RLAA 3MFVA 5THTA 1XFKA 1HQFA 4QA2A 5G0GA 1C3PA 4ITYA 5A2SA 4RHQA 4QA0A 5DC7A 1T64A 3EZPA 4IU4A 5THVA 5EFHA 4RHLA 5BWZA 3C0ZA 3NIOA 4GSZA 3F07A 3MJLA 4QA1A 5G3WA 1WVAA 4GWDA 4CQFA 1WVBA 3SL0A 4Q3TA 5LI3A 2PHOA 3E8QA 2VQQA 4MYNA 1HQHA 3MMRA 4RHJA 1WOHA 5EEIA 1TBHA 3Q9EA 3MZ3A 3GMZA 5CEVA 1PQ3A 2VQVA 1P8PA 3Q9CA 5EFGA 2PHAA 3CEVA 4Q3RA 3DJ8A 5EF7A 3NIQA 4IE3A 5THUA 2VCGA 5G1CA 1T69A 2VQMA 4FCKA 3Q9FA 4BZ8A 1P8NA 1R1OA 2ZAVA 1T5FA 5FUEA 4Q42A 3MZ6A 1T4RA 1P8MA 5ICNB 3THJA 1D3VA 1P8RA 5D1BA 5G11A 4CEVA 1W22A 2EIVA 4RHIA 3LHLA
chains in the Genus database with same CATH topology
1P8OA 4HXQA 3M1RA 3E6VA 4HWWA 1TBJA 1T4PA 3SKKA 4MYFA 3NIPA 4Q3SA 4MXRA 4Q3PA 4MYLA 3SL1A 1T4SA 1T5GA 1CEVA 2EF5A 4Q3QA 2EF4A 4MYKA 4Q3VA 1HQGA 3E9BA 4Q41A 3E8ZA 4IU5A 3E6KA 4HZEA 1P8QA 2AEBA 3PZLA 1P8SA 1TA1A 1TBLA 4IXVA 1T4TA 4RLAA 4RHMA 1WOIA 2CEVA 1HQ5A 3TF3A 4FCIA 4IE1A 3GN0A 5HJ9A 3KV2A 1ZPEA 4I06A 4IE2A 3LP7A 5CEVA 4G3HA 5RLAA 4Q3UA 1GQ7A 4IU1A 3SJTA 2A0MA 4Q40A 3F80A 4Q3RC 5HJAA 3MFWA 1RLAA 3THHA 4RHKA 1GQ6A 4GWCA 4GSVA 3THEA 2RLAA 1HQXA 4IU0A 1ZPGA 4GSMA 4IXUA 3TH7A 2PLLA 1WOGA 3LP4A 4DZ4A 3RLAA 3MFVA 1XFKA 1HQFA 4ITYA 4RHQA 4IU4A 4RHLA 3NIOA 4GSZA 3MJLA 1WVAA 4GWDA 1WVBA 3SL0A 4Q3TA 2PHOA 3E8QA 4MYNA 1HQHA 3MMRA 4RHJA 1WOHA 1TBHA 3GMZA 1PQ3A 1P8PA 2PHAA 3CEVA 4Q3RA 3DJ8A 3NIQA 4IE3A 4FCKA 1P8NA 1R1OA 2ZAVA 1T5FA 4Q42A 1T4RA 1P8MA 3THJA 1D3VA 1P8RA 4CEVA 2EIVA 4RHIA 3LHLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1P8O A;  4HXQ A;  3M1R A;  3E6V A;  4HWW A;  1TBJ A;  1T4P A;  3SKK A;  4MYF A;  3NIP A;  4Q3S A;  4MXR A;  4Q3P A;  4MYL A;  3SL1 A;  1T4S A;  1T5G A;  1CEV A;  2EF5 A;  4Q3Q A;  2EF4 A;  4MYK A;  4Q3V A;  1HQG A;  3E9B A;  4Q41 A;  3E8Z A;  4IU5 A;  3E6K A;  4HZE A;  1P8Q A;  2AEB A;  3PZL A;  1P8S A;  1TA1 A;  1TBL A;  4IXV A;  1T4T A;  4RLA A;  4RHM A;  1WOI A;  2CEV A;  1HQ5 A;  3TF3 A;  4FCI A;  4IE1 A;  3GN0 A;  5HJ9 A;  3KV2 A;  1ZPE A;  4I06 A;  4IE2 A;  3LP7 A;  5CEV A;  4G3H A;  5RLA A;  4Q3U A;  1GQ7 A;  4IU1 A;  3SJT A;  2A0M A;  4Q40 A;  3F80 A;  4Q3R C;  5HJA A;  3MFW A;  1RLA A;  3THH A;  4RHK A;  1GQ6 A;  4GWC A;  4GSV A;  3THE A;  2RLA A;  1HQX A;  4IU0 A;  1ZPG A;  4GSM A;  4IXU A;  3TH7 A;  2PLL A;  1WOG A;  3LP4 A;  4DZ4 A;  3RLA A;  3MFV A;  1XFK A;  1HQF A;  4ITY A;  4RHQ A;  4IU4 A;  4RHL A;  3NIO A;  4GSZ A;  3MJL A;  1WVA A;  4GWD A;  1WVB A;  3SL0 A;  4Q3T A;  2PHO A;  3E8Q A;  4MYN A;  1HQH A;  3MMR A;  4RHJ A;  1WOH A;  1TBH A;  3GMZ A;  1PQ3 A;  1P8P A;  2PHA A;  3CEV A;  4Q3R A;  3DJ8 A;  3NIQ A;  4IE3 A;  4FCK A;  1P8N A;  1R1O A;  2ZAV A;  1T5F A;  4Q42 A;  1T4R A;  1P8M A;  3THJ A;  1D3V A;  1P8R A;  4CEV A;  2EIV A;  4RHI A;  3LHL A; 
#chains in the Genus database with same CATH topology
 4ZUM A;  1P8O A;  4CBT A;  4HXQ A;  4BZ9 A;  3M1R A;  3SFH A;  3E6V A;  4HWW A;  1TBJ A;  5G12 A;  4A69 A;  4RN0 A;  1T4P A;  3SKK A;  3ZNS A;  4QA4 A;  3C10 A;  5EFK B;  5EEM A;  4MYF A;  5G13 A;  3NIP A;  5G10 A;  4Q3S A;  5D1D A;  4MXR A;  3MZ7 A;  4Q3P A;  5DC5 A;  3MEN A;  4MYL A;  4ZUR A;  3SL1 A;  2V5W A;  5EFJ D;  1T4S A;  1T5G A;  1CEV A;  5EEN A;  2EF5 A;  4RN2 A;  4Q3Q A;  3Q9B A;  2EF4 A;  4MYK A;  1C3R A;  4Q3V A;  4QA7 A;  1HQG A;  3ZNR A;  3E9B A;  5EF8 A;  5THS A;  3RQD A;  4QA5 A;  5EFB D;  4Q41 A;  3E8Z A;  5EFN A;  5G1A A;  4IU5 A;  3EW8 A;  5FCW A;  4LXZ A;  2VQW G;  3C0Y A;  5IWG A;  3E6K A;  4HZE A;  1P8Q A;  2GH6 A;  4BZ6 A;  4ZUP A;  5DC8 A;  2AEB A;  3PZL A;  1P8S A;  1TA1 A;  1ZZ0 A;  5G0X A;  1TBL A;  4IXV A;  1T4T A;  4RLA A;  4QA6 A;  4RN1 A;  5JI5 A;  4RHM A;  1WOI A;  2CEV A;  1HQ5 A;  5G0H A;  3TF3 A;  4FCI A;  1ZZ1 A;  4BZ7 A;  4IE1 A;  3GN0 A;  5HJ9 A;  2V5X A;  1ZPE A;  1VKG A;  3KV2 A;  4I06 A;  3LP7 A;  4IE2 A;  3F06 A;  4BZ5 A;  3MAX A;  4G3H A;  5EEK A;  4Q3U A;  1GQ7 A;  5IX0 A;  4IU1 A;  5RLA A;  3SJT A;  3EZT A;  1ZZ3 A;  1T67 A;  5G1B A;  2A0M A;  3F0R A;  4Q40 A;  2VQJ A;  3F80 A;  4Q3R C;  3SFF A;  5HJA A;  3MFW A;  1RLA A;  3THH A;  1C3S A;  4RHK A;  1GQ6 A;  4ZUN A;  4BKX B;  4GWC A;  5D1C A;  3MZ4 A;  4GSV A;  3THE A;  2RLA A;  2VQO A;  5DC6 A;  1HQX A;  5G0J A;  4IU0 A;  1ZPG A;  4ZUQ A;  5G0I A;  4CBY A;  3EWF A;  4GSM A;  4IXU A;  4QA3 A;  5G17 A;  3TH7 A;  4LY1 A;  5EEF A;  4ZUO A;  2PLL A;  1WOG A;  3LP4 A;  4DZ4 A;  5G0Y A;  3RLA A;  3MFV A;  5THT A;  1XFK A;  1HQF A;  4QA2 A;  5G0G A;  1C3P A;  4ITY A;  5A2S A;  4RHQ A;  4QA0 A;  5DC7 A;  1T64 A;  3EZP A;  4IU4 A;  5THV A;  5EFH A;  4RHL A;  5BWZ A;  3C0Z A;  3NIO A;  4GSZ A;  3F07 A;  3MJL A;  4QA1 A;  5G3W A;  1WVA A;  4GWD A;  4CQF A;  1WVB A;  3SL0 A;  4Q3T A;  5LI3 A;  2PHO A;  3E8Q A;  2VQQ A;  4MYN A;  1HQH A;  3MMR A;  4RHJ A;  1WOH A;  5EEI A;  1TBH A;  3Q9E A;  3MZ3 A;  3GMZ A;  5CEV A;  1PQ3 A;  2VQV A;  1P8P A;  3Q9C A;  5EFG A;  2PHA A;  3CEV A;  4Q3R A;  3DJ8 A;  5EF7 A;  3NIQ A;  4IE3 A;  5THU A;  2VCG A;  5G1C A;  1T69 A;  2VQM A;  4FCK A;  3Q9F A;  4BZ8 A;  1P8N A;  1R1O A;  2ZAV A;  1T5F A;  5FUE A;  4Q42 A;  3MZ6 A;  1T4R A;  1P8M A;  5ICN B;  3THJ A;  1D3V A;  1P8R A;  5D1B A;  5G11 A;  4CEV A;  1W22 A;  2EIV A;  4RHI A;  3LHL A; 
#chains in the Genus database with same CATH homology
 1P8O A;  4HXQ A;  3M1R A;  3E6V A;  4HWW A;  1TBJ A;  1T4P A;  3SKK A;  4MYF A;  3NIP A;  4Q3S A;  4MXR A;  4Q3P A;  4MYL A;  3SL1 A;  1T4S A;  1T5G A;  1CEV A;  2EF5 A;  4Q3Q A;  2EF4 A;  4MYK A;  4Q3V A;  1HQG A;  3E9B A;  4Q41 A;  3E8Z A;  4IU5 A;  3E6K A;  4HZE A;  1P8Q A;  2AEB A;  3PZL A;  1P8S A;  1TA1 A;  1TBL A;  4IXV A;  1T4T A;  4RLA A;  4RHM A;  1WOI A;  2CEV A;  1HQ5 A;  3TF3 A;  4FCI A;  4IE1 A;  3GN0 A;  5HJ9 A;  3KV2 A;  1ZPE A;  4I06 A;  4IE2 A;  3LP7 A;  5CEV A;  4G3H A;  5RLA A;  4Q3U A;  1GQ7 A;  4IU1 A;  3SJT A;  2A0M A;  4Q40 A;  3F80 A;  4Q3R C;  5HJA A;  3MFW A;  1RLA A;  3THH A;  4RHK A;  1GQ6 A;  4GWC A;  4GSV A;  3THE A;  2RLA A;  1HQX A;  4IU0 A;  1ZPG A;  4GSM A;  4IXU A;  3TH7 A;  2PLL A;  1WOG A;  3LP4 A;  4DZ4 A;  3RLA A;  3MFV A;  1XFK A;  1HQF A;  4ITY A;  4RHQ A;  4IU4 A;  4RHL A;  3NIO A;  4GSZ A;  3MJL A;  1WVA A;  4GWD A;  1WVB A;  3SL0 A;  4Q3T A;  2PHO A;  3E8Q A;  4MYN A;  1HQH A;  3MMR A;  4RHJ A;  1WOH A;  1TBH A;  3GMZ A;  1PQ3 A;  1P8P A;  2PHA A;  3CEV A;  4Q3R A;  3DJ8 A;  3NIQ A;  4IE3 A;  4FCK A;  1P8N A;  1R1O A;  2ZAV A;  1T5F A;  4Q42 A;  1T4R A;  1P8M A;  3THJ A;  1D3V A;  1P8R A;  4CEV A;  2EIV A;  4RHI A;  3LHL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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