2PHNA

Crystal structure of an amide bond forming f420-gamma glutamyl ligase from archaeoglobus fulgidus
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
248
structure length
248
Chain Sequence
RVEVFPVEGLPLIKEGDDLAELISSRVRFEDGDVLVVCSTVISKAEGRIRRLEEFNPSERAKEIAARIGKPAEFVQAVLEESEEVLLDFPFLLVKAKFGNVCVNAGIDASNVEEGSLLLPPLDPDGSAEKLRRRILELTGKRVGVIITDTNGRCFRRGVVGFAIGISGVKAMKDWIGRKDLYGRELEVTVECVADEIAAFANLLMGEGGDGIPAVVVRGLNVAGEGSMEEIYRSEEEDVIRRCLKRCL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords F420-0:gamma-glutamyl ligase
publication title Structure of an Amide Bond Forming F(420):gammagamma-glutamyl Ligase from Archaeoglobus Fulgidus - A Member of a New Family of Non-ribosomal Peptide Synthases.
pubmed doi rcsb
source organism Archaeoglobus fulgidus dsm 4304
molecule tags Ligase
total genus 70
structure length 248
sequence length 248
chains with identical sequence B
ec nomenclature ec 6.3.2.31: Coenzyme F420-0:L-glutamate ligase.
pdb deposition date 2007-04-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01996 F420_ligase F420-0:Gamma-glutamyl ligase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1330.100 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; CofE-like 2phnA01
3.90.1660.10 Alpha Beta Alpha-Beta Complex CofE-like fold CofE-like domain 2phnA02
2G9IA 2PHNA
chains in the Genus database with same CATH superfamily
3CPWF 3GHZA 4EI9A 1VQOF 3LWOC 3DDNA 1TUBB 1QAHA 5EIBD 5HXZA 5EZYB 3N2GB 3WGJA 3QUWA 3F0DA 3RYIA 5JH7A 2KTVA 3TD5A 5CA1B 1IV3A 4G4WA 2VAWA 5MN5A 3NMUC 1YQNA 4YJ2A 3E20B 2LCAA 3K14A 4B46A 5BMVB 2GLZA 3MQWA 4O4HB 3S0YA 3CCEF 3IKFA 2QEXF 2UZHA 2KGWA 3K0TA 4TUYA 2DT4A 2R6R1 3JAWB 1E7KA 5GIPC 1FFXA 2F9ZC 1VQ6F 2HS3A 3D00A 5MN6A 2OZBA 2RHHA 1YJWF 3CXCF 2CW4A 3JALA 3QHDA 3HKBA 1TVKB 3JAKA 4G4VA 5EYPA 2OTLF 3HKCB 3VYSC 3EORA 5J2TB 5HXUA 1H7MA 5CA0B 1JD1A 3PLAC 5C8YB 4X1IA 1YGYA 2RHLA 4ZHVA 3LWQC 4RHAA 4WBNB 3DC2A 3RYCA 1OFUA 3LMEA 3VI6A 1CK2A 1QU9A 1YI2F 3F0FA 1Z5VA 3C8LA 5LXTA 5EO3A 2H8CA 2CZWA 3U0OA 3N2KB 2ZOVA 3AGKA 2Z1EA 3S0HA 5KX5B 3ON1A 4G4YA 4X1KB 3VTIC 3ERNA 5HY2A 2G9IA 5DCVA 3JATB 4I4TB 4YJ3B 3UT5B 4FFBA 4LNUB 3OONA 4I55A 4NQ3A 3WXMB 1X52A 3G71F 1H47A 4E6EA 3KIZA 1X7OA 3KJKA 1Q8RA 2OHWA 1SZQA 5GINC 3HKEB 3VYTC 1W40A 4U39A 2QI2A 3CMEF 2UYJA 1W59A 4O2BA 4BVRA 3RYHA 2NMUA 2OTMA 5JH7B 5HY0A 3HWUA 5CB4A 3CC2F 2RHOA 3S06A 1KQSF 1Z5WA 5LP6A 3WGMA 3JAMM 3Q8HA 3LWRC 5FNVA 1IPAA 3D54A 1RQ7A 4HNAA 4O4IA 3CCVF 3CCSF 4NUTA 4TUYB 3GTZA 3P0ZA 2HVYD 3VMFB 3FD5A 5FLXM 3NVKE 1FFXB 2AIFA 1VQKF 2BTOA 3NK7A 1IV2A 3K12A 4C4WC 5EB0A 4U3JA 3J80M 2HS0A 4ZHWA 5G4UC 3IR9A 2HP0A 3JALB 1U3PA 5EIBC 3HKBB 3JAKB 1VQLF 1FNJA 3VYUC 1N8RH 1W5EA 4BVTA 1SA0A 1W41A 4BVQA 2JNBA 4X1IB 4O4LA 1U40A 2L26A 2HRYA 2I6DA 3I3FA 3HKDA 3MCQA 4X3MA 4DRXB 3RYCB 4ZI7A 1JJ2F 3FPIA 1XHOA 2BTUA 3VO8A 5LOVB 3WGLA 4X1YA 3WPWA 5IYZA 1FNKA 5LXTB 1W581 1VQ8F 4C8IA 5IJ0A 1Q86H 2FGYA 1YJNF 4ZHQA 1W3EX 3T80A 1PF5A 4B5CA 1KC8H 4IHJA 4C82A 3VIUA 3IEWA 3N4YA 4X3LA 3C9RA 1VQ4F 4FFBB 2VAMA 2Z01A 3CB2A 5JCOC 2Q1XA 3F0GA 5MN4A 1UFYA 2VAPA 3FFMA 1GO1A 3B6NA 3ZOPA 5IJ9A 2HX0A 3WGKA 3JARA 3S03A 3ZP7A 5KMGA 3JCMM 5ITZB 5JVDB 5JQGA 1NJIH 1RA4A 4O2BB 4X20B 3RYHB 4O4JA 3O85A 4EI8A 3I55F 3C9UA 5EZYA 3N2GA 4M8IA 3NVIB 1X25A 3HJWC 3RA6A 5CB4B 3SIUA 4O2AB 1CLIA 5CA1A 3F0EA 2CSLA 5LP6B 3CCRF 2IQQA 3CCLF 1XV2A 2WALA 1T0AA 5FNVB 1VQ9F 3MDOA 2Q1YA 2R751 4HNAB 1VQVA 3LWVC 1VQMF 3TD3A 3S02A 1RQ2A 2ZODA 1VQ7F 1JN1A 2LBXA 3CYPB 1UI9A 4TZZA 3E1YA 1U43A 3JAWA 1ZWZA 2PMPA 4TV9B 4EB6A 3RYFA 4EI7A 1YHQF 1Q81H 3ZP4A 4G88A 1XRGA 1QD9A 1DBFA 2HP0B 1K73H 3D01A 3CYQA 1R1MA 3NK6A 1W5AA 4BY9D 3CD6F 4NWOB 3RYIB 2HRUA 4BT6A 2UYNA 3J81M 2HP3A 4F6RA 4XCQA 5LA6A 4YJ2B 3E22A 1SA0B 2Z1TA 3P10A 4R40B 5J2TA 4DXDA 1CN7A 5J2UA 1GX1A 2EWCA 5CA0A 2FC3A 1JFFA 3M4SA 1X7PA 3C9TA 3TD4A 4ZI7B 3KHNA 3FBAA 1FSZA 4IIJA 2V9YA 3G6EF 2PHNA 5IYZB 3CCUF 1OAPA 1ODEA 2CVLA 5HY1A 1QVGF 4C81A 5IJ0B 5GAPK 5GONA 1VHAA 3F6MA 3N2KA 4BVSA 4IHJB 2UYKA 2ZVZA 3ELCA 3V4DA 3N4ZA 2AMTA 2ZAUA 4G4ZA 4X1KA 1KNKA 3CCJF 5EYPB 1GZ0A 1COMA 1VK3A 1XBIA 2Z1UA 4ZOLA 4BW0B 3JATA 4YJ3A 3M1XA 2K1SA 3IMPA 3V3TA 5B8FA 4B62A 5IJ9B 2LBTA 5KMGB 2ZF8A 4BT5A 2B33A 2KG4A 1VQ5F 1K9MH 2HQSC 1RLGA 2AIZP 4O4JB 3HKEA 5LP6C 3WGNA 4I50A 3I56F 3G4SF 3LDTA 1W2BF 3KJJA 2CWJA 1YIJF 1Q82H 1Q7YH 2OTJF 3CCQF 3HAXD 2GVIA 3CCMF 3V7QA 4BT3A 2MQEA 2IG8A 3LFOA 4TV8A 4B45A 2DYYA 3HTNA 4C8EA 5LYJA 2UYPA 3BYQA 1T0KB 3RE3A 2Z1FA 3OBYA 1H48A 1DT9A 4I55B 1JY8A 3S0WA 1W42A 1VH8A 1NMUB 4EB6B 3JASA 3RYFB 4PWTA 1M90H 3QTYA 4BT2A 5GANK 1VQPF 3IEQA 3RA5A 2VGMA 2N48A 5EAZA 1PXWA 1K8AH 3VCZA 1TUBA 5FJ4C 2UYNB 4F6RB 5EWRA 3CPQA 3I7TA 3M84A 5LA6B 3E22B 3WJPA 1NQ3A 1W5BA 2H6LA 5J2UB 3L7QA 3C9SA 1W57A 4O4IB 1JFFB 1KNJA 4BT4A 5BMVA 3MCAB 3CG6A 4IIJB 4C8GA 5HP7A 4O4HA 4DRXA 5GIOC 2ZVYA 1IV4A 3MBMA 5LOVA 3FD6A 3CC7F 3OW2F 5GONB 5HY4A 4LCKA 4U3JB 1QVFF 1ONIA 2VGNA 3CC4F 2CHSA 1M1KH 3JVHA 2H8EA 2P6YA 2GZLA 2ALEA 3KE1A 1VQNF 5A2QM 1KD1H 2W8BC 3K2XA 3WPXA 2HS4A 4ZOLB 1S72F 3ESJA 3WJQA 1TVKA 5G4VC 4ZK7A 2QTPA 4KWEA 3HKCA 3SIVA 2BTQB 2CHTA 4O4LB 3LWPC 3HKDB 5C8YA 1W5FA 4BT7A 3P4EA 3LYBA 2RHJA 5ITZA 1U3LA 4I50B 5EB1B 2LBWA 5JVDA 4G4XA 4X1YB 4WBNA 5HP8A 4X20A 5IT9M 2KTUA 3PAFA 3J7AR 5HWEA 1YITF 3V7EA 2RB9A 4RQOA 4ZHQB 4O2AA 4TV8B 3VOBA 1J7HA 3GYQA 2YXZA 5KX5A 3ZO8A 5LYJB 1SDSA 3WJRA 3VOAA 2IAFA 3R0PA 3IKEA 2VXYA 2BO1A 1RLUA 2I6RA 2YYEA 2QA4F 4I4TA 3UT5A 4LNUA 4ZHYB 3CMAF 3JASB 1IV1A 4ERHA 5AVMA 3JARB 1W55A 1YJ9F 1GO0A 4TV9A 5JCOA 3OBWA 5JQGB
chains in the Genus database with same CATH topology
2G9IA 2PHNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2G9I A;  2PHN A; 
#chains in the Genus database with same CATH topology
 3CPW F;  3GHZ A;  4EI9 A;  1VQO F;  3LWO C;  3DDN A;  1TUB B;  1QAH A;  5EIB D;  5HXZ A;  5EZY B;  3N2G B;  3WGJ A;  3QUW A;  3F0D A;  3RYI A;  5JH7 A;  2KTV A;  3TD5 A;  5CA1 B;  1IV3 A;  4G4W A;  2VAW A;  5MN5 A;  3NMU C;  1YQN A;  4YJ2 A;  3E20 B;  2LCA A;  3K14 A;  4B46 A;  5BMV B;  2GLZ A;  3MQW A;  4O4H B;  3S0Y A;  3CCE F;  3IKF A;  2QEX F;  2UZH A;  2KGW A;  3K0T A;  4TUY A;  2DT4 A;  2R6R 1;  3JAW B;  1E7K A;  5GIP C;  1FFX A;  2F9Z C;  1VQ6 F;  2HS3 A;  3D00 A;  5MN6 A;  2OZB A;  2RHH A;  1YJW F;  3CXC F;  2CW4 A;  3JAL A;  3QHD A;  3HKB A;  1TVK B;  3JAK A;  4G4V A;  5EYP A;  2OTL F;  3HKC B;  3VYS C;  3EOR A;  5J2T B;  5HXU A;  1H7M A;  5CA0 B;  1JD1 A;  3PLA C;  5C8Y B;  4X1I A;  1YGY A;  2RHL A;  4ZHV A;  3LWQ C;  4RHA A;  4WBN B;  3DC2 A;  3RYC A;  1OFU A;  3LME A;  3VI6 A;  1CK2 A;  1QU9 A;  1YI2 F;  3F0F A;  1Z5V A;  3C8L A;  5LXT A;  5EO3 A;  2H8C A;  2CZW A;  3U0O A;  3N2K B;  2ZOV A;  3AGK A;  2Z1E A;  3S0H A;  5KX5 B;  3ON1 A;  4G4Y A;  4X1K B;  3VTI C;  3ERN A;  5HY2 A;  2G9I A;  5DCV A;  3JAT B;  4I4T B;  4YJ3 B;  3UT5 B;  4FFB A;  4LNU B;  3OON A;  4I55 A;  4NQ3 A;  3WXM B;  1X52 A;  3G71 F;  1H47 A;  4E6E A;  3KIZ A;  1X7O A;  3KJK A;  1Q8R A;  2OHW A;  1SZQ A;  5GIN C;  3HKE B;  3VYT C;  1W40 A;  4U39 A;  2QI2 A;  3CME F;  2UYJ A;  1W59 A;  4O2B A;  4BVR A;  3RYH A;  2NMU A;  2OTM A;  5JH7 B;  5HY0 A;  3HWU A;  5CB4 A;  3CC2 F;  2RHO A;  3S06 A;  1KQS F;  1Z5W A;  5LP6 A;  3WGM A;  3JAM M;  3Q8H A;  3LWR C;  5FNV A;  1IPA A;  3D54 A;  1RQ7 A;  4HNA A;  4O4I A;  3CCV F;  3CCS F;  4NUT A;  4TUY B;  3GTZ A;  3P0Z A;  2HVY D;  3VMF B;  3FD5 A;  5FLX M;  3NVK E;  1FFX B;  2AIF A;  1VQK F;  2BTO A;  3NK7 A;  1IV2 A;  3K12 A;  4C4W C;  5EB0 A;  4U3J A;  3J80 M;  2HS0 A;  4ZHW A;  5G4U C;  3IR9 A;  2HP0 A;  3JAL B;  1U3P A;  5EIB C;  3HKB B;  3JAK B;  1VQL F;  1FNJ A;  3VYU C;  1N8R H;  1W5E A;  4BVT A;  1SA0 A;  1W41 A;  4BVQ A;  2JNB A;  4X1I B;  4O4L A;  1U40 A;  2L26 A;  2HRY A;  2I6D A;  3I3F A;  3HKD A;  3MCQ A;  4X3M A;  4DRX B;  3RYC B;  4ZI7 A;  1JJ2 F;  3FPI A;  1XHO A;  2BTU A;  3VO8 A;  5LOV B;  3WGL A;  4X1Y A;  3WPW A;  5IYZ A;  1FNK A;  5LXT B;  1W58 1;  1VQ8 F;  4C8I A;  5IJ0 A;  1Q86 H;  2FGY A;  1YJN F;  4ZHQ A;  1W3E X;  3T80 A;  1PF5 A;  4B5C A;  1KC8 H;  4IHJ A;  4C82 A;  3VIU A;  3IEW A;  3N4Y A;  4X3L A;  3C9R A;  1VQ4 F;  4FFB B;  2VAM A;  2Z01 A;  3CB2 A;  5JCO C;  2Q1X A;  3F0G A;  5MN4 A;  1UFY A;  2VAP A;  3FFM A;  1GO1 A;  3B6N A;  3ZOP A;  5IJ9 A;  2HX0 A;  3WGK A;  3JAR A;  3S03 A;  3ZP7 A;  5KMG A;  3JCM M;  5ITZ B;  5JVD B;  5JQG A;  1NJI H;  1RA4 A;  4O2B B;  4X20 B;  3RYH B;  4O4J A;  3O85 A;  4EI8 A;  3I55 F;  3C9U A;  5EZY A;  3N2G A;  4M8I A;  3NVI B;  1X25 A;  3HJW C;  3RA6 A;  5CB4 B;  3SIU A;  4O2A B;  1CLI A;  5CA1 A;  3F0E A;  2CSL A;  5LP6 B;  3CCR F;  2IQQ A;  3CCL F;  1XV2 A;  2WAL A;  1T0A A;  5FNV B;  1VQ9 F;  3MDO A;  2Q1Y A;  2R75 1;  4HNA B;  1VQV A;  3LWV C;  1VQM F;  3TD3 A;  3S02 A;  1RQ2 A;  2ZOD A;  1VQ7 F;  1JN1 A;  2LBX A;  3CYP B;  1UI9 A;  4TZZ A;  3E1Y A;  1U43 A;  3JAW A;  1ZWZ A;  2PMP A;  4TV9 B;  4EB6 A;  3RYF A;  4EI7 A;  1YHQ F;  1Q81 H;  3ZP4 A;  4G88 A;  1XRG A;  1QD9 A;  1DBF A;  2HP0 B;  1K73 H;  3D01 A;  3CYQ A;  1R1M A;  3NK6 A;  1W5A A;  4BY9 D;  3CD6 F;  4NWO B;  3RYI B;  2HRU A;  4BT6 A;  2UYN A;  3J81 M;  2HP3 A;  4F6R A;  4XCQ A;  5LA6 A;  4YJ2 B;  3E22 A;  1SA0 B;  2Z1T A;  3P10 A;  4R40 B;  5J2T A;  4DXD A;  1CN7 A;  5J2U A;  1GX1 A;  2EWC A;  5CA0 A;  2FC3 A;  1JFF A;  3M4S A;  1X7P A;  3C9T A;  3TD4 A;  4ZI7 B;  3KHN A;  3FBA A;  1FSZ A;  4IIJ A;  2V9Y A;  3G6E F;  2PHN A;  5IYZ B;  3CCU F;  1OAP A;  1ODE A;  2CVL A;  5HY1 A;  1QVG F;  4C81 A;  5IJ0 B;  5GAP K;  5GON A;  1VHA A;  3F6M A;  3N2K A;  4BVS A;  4IHJ B;  2UYK A;  2ZVZ A;  3ELC A;  3V4D A;  3N4Z A;  2AMT A;  2ZAU A;  4G4Z A;  4X1K A;  1KNK A;  3CCJ F;  5EYP B;  1GZ0 A;  1COM A;  1VK3 A;  1XBI A;  2Z1U A;  4ZOL A;  4BW0 B;  3JAT A;  4YJ3 A;  3M1X A;  2K1S A;  3IMP A;  3V3T A;  5B8F A;  4B62 A;  5IJ9 B;  2LBT A;  5KMG B;  2ZF8 A;  4BT5 A;  2B33 A;  2KG4 A;  1VQ5 F;  1K9M H;  2HQS C;  1RLG A;  2AIZ P;  4O4J B;  3HKE A;  5LP6 C;  3WGN A;  4I50 A;  3I56 F;  3G4S F;  3LDT A;  1W2B F;  3KJJ A;  2CWJ A;  1YIJ F;  1Q82 H;  1Q7Y H;  2OTJ F;  3CCQ F;  3HAX D;  2GVI A;  3CCM F;  3V7Q A;  4BT3 A;  2MQE A;  2IG8 A;  3LFO A;  4TV8 A;  4B45 A;  2DYY A;  3HTN A;  4C8E A;  5LYJ A;  2UYP A;  3BYQ A;  1T0K B;  3RE3 A;  2Z1F A;  3OBY A;  1H48 A;  1DT9 A;  4I55 B;  1JY8 A;  3S0W A;  1W42 A;  1VH8 A;  1NMU B;  4EB6 B;  3JAS A;  3RYF B;  4PWT A;  1M90 H;  3QTY A;  4BT2 A;  5GAN K;  1VQP F;  3IEQ A;  3RA5 A;  2VGM A;  2N48 A;  5EAZ A;  1PXW A;  1K8A H;  3VCZ A;  1TUB A;  5FJ4 C;  2UYN B;  4F6R B;  5EWR A;  3CPQ A;  3I7T A;  3M84 A;  5LA6 B;  3E22 B;  3WJP A;  1NQ3 A;  1W5B A;  2H6L A;  5J2U B;  3L7Q A;  3C9S A;  1W57 A;  4O4I B;  1JFF B;  1KNJ A;  4BT4 A;  5BMV A;  3MCA B;  3CG6 A;  4IIJ B;  4C8G A;  5HP7 A;  4O4H A;  4DRX A;  5GIO C;  2ZVY A;  1IV4 A;  3MBM A;  5LOV A;  3FD6 A;  3CC7 F;  3OW2 F;  5GON B;  5HY4 A;  4LCK A;  4U3J B;  1QVF F;  1ONI A;  2VGN A;  3CC4 F;  2CHS A;  1M1K H;  3JVH A;  2H8E A;  2P6Y A;  2GZL A;  2ALE A;  3KE1 A;  1VQN F;  5A2Q M;  1KD1 H;  2W8B C;  3K2X A;  3WPX A;  2HS4 A;  4ZOL B;  1S72 F;  3ESJ A;  3WJQ A;  1TVK A;  5G4V C;  4ZK7 A;  2QTP A;  4KWE A;  3HKC A;  3SIV A;  2BTQ B;  2CHT A;  4O4L B;  3LWP C;  3HKD B;  5C8Y A;  1W5F A;  4BT7 A;  3P4E A;  3LYB A;  2RHJ A;  5ITZ A;  1U3L A;  4I50 B;  5EB1 B;  2LBW A;  5JVD A;  4G4X A;  4X1Y B;  4WBN A;  5HP8 A;  4X20 A;  5IT9 M;  2KTU A;  3PAF A;  3J7A R;  5HWE A;  1YIT F;  3V7E A;  2RB9 A;  4RQO A;  4ZHQ B;  4O2A A;  4TV8 B;  3VOB A;  1J7H A;  3GYQ A;  2YXZ A;  5KX5 A;  3ZO8 A;  5LYJ B;  1SDS A;  3WJR A;  3VOA A;  2IAF A;  3R0P A;  3IKE A;  2VXY A;  2BO1 A;  1RLU A;  2I6R A;  2YYE A;  2QA4 F;  4I4T A;  3UT5 A;  4LNU A;  4ZHY B;  3CMA F;  3JAS B;  1IV1 A;  4ERH A;  5AVM A;  3JAR B;  1W55 A;  1YJ9 F;  1GO0 A;  4TV9 A;  5JCO A;  3OBW A;  5JQG B; 
#chains in the Genus database with same CATH homology
 2G9I A;  2PHN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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