2PHNA

Crystal structure of an amide bond forming f420-gamma glutamyl ligase from archaeoglobus fulgidus
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
248
structure length
248
Chain Sequence
RVEVFPVEGLPLIKEGDDLAELISSRVRFEDGDVLVVCSTVISKAEGRIRRLEEFNPSERAKEIAARIGKPAEFVQAVLEESEEVLLDFPFLLVKAKFGNVCVNAGIDASNVEEGSLLLPPLDPDGSAEKLRRRILELTGKRVGVIITDTNGRCFRRGVVGFAIGISGVKAMKDWIGRKDLYGRELEVTVECVADEIAAFANLLMGEGGDGIPAVVVRGLNVAGEGSMEEIYRSEEEDVIRRCLKRCL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of an Amide Bond Forming F(420):gammagamma-glutamyl Ligase from Archaeoglobus Fulgidus - A Member of a New Family of Non-ribosomal Peptide Synthases.
pubmed doi rcsb
source organism Archaeoglobus fulgidus dsm 4304
molecule tags Ligase
molecule keywords F420-0:gamma-glutamyl ligase
total genus 70
structure length 248
sequence length 248
chains with identical sequence B
ec nomenclature ec 6.3.2.31: Coenzyme F420-0:L-glutamate ligase.
pdb deposition date 2007-04-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01996 F420_ligase F420-0:Gamma-glutamyl ligase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1330.100 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; CofE-like 2phnA01
3.90.1660.10 Alpha Beta Alpha-Beta Complex CofE-like fold CofE-like domain 2phnA02
2PHNA 2G9IA
chains in the Genus database with same CATH superfamily
3E1YA 2UYJA 4O4JA 2BO1A 4C8IA 1Q82H 2ALEA 2ZF8A 3GHZA 3F0EA 3PLAC 1OFUA 4ZHQB 4BT7A 4C8EA 2UYKA 4X1KA 1W41A 4X20B 1JJ2F 5GIOC 1QU9A 1T0KB 4BVRA 2VGMA 1W5FA 3JALB 3NK7A 3VI6A 1XBIA 3C9SA 5J2UA 5HY4A 4HNAB 4E6EA 2CHSA 2IG8A 3F0DA 3JASB 5JH7B 1VQ4F 1CLIA 2AIFA 4NWOB 3CYPB 1RQ2A 1YI2F 3P0ZA 2ZAUA 1R1MA 1H48A 2UYNA 3CPWF 4BY9D 1N8RH 1E7KA 5LP6A 1IV3A 3VOBA 3N2GA 1GO0A 1TVKA 1W3EX 4ZI7A 1W5EA 4I55B 3HKEA 4M8IA 5EZYA 1IPAA 1W42A 4FFBA 2B33A 5LA6B 3RYFB 3JAWB 1W5AA 4U39A 4BT3A 4YJ3A 5LYJA 5JH7A 3KIZA 3CCQF 2OZBA 3JAWA 1Q86H 4HNAA 3CB2A 5EZYB 1VQKF 3OBWA 3J7AR 4O4IA 5GIPC 1VQPF 2Z1TA 2GVIA 3RYIB 5JCOC 2ZVYA 3VYSC 1GX1A 1QD9A 2LBWA 1T0AA 3RA5A 5MN5A 3M84A 3EORA 3KJKA 2Z1UA 4DRXA 3LWPC 4O2BB 3D01A 5KX5A 1KQSF 3JAMM 3VYTC 3I56F 1YJNF 4NUTA 3MBMA 4LNUA 4O4HB 3TD4A 1RLUA 5IJ0B 1NJIH 4LCKA 1YHQF 2LBTA 1X7OA 1KD1H 1X7PA 4G4WA 5EIBD 2QEXF 4LNUB 3WGMA 5FLXM 1Q8RA 2HS3A 4I4TB 2HS0A 3HKDB 1PXWA 3WXMB 4O2BA 3MDOA 4PWTA 5HY0A 3HTNA 3E20B 3WJRA 1OAPA 3S06A 3OONA 2VAMA 3K0TA 3FFMA 2RHHA 4G4ZA 4ZOLB 4WBNA 1YJWF 1VQ8F 3V7EA 2DT4A 3C9UA 5LYJB 1Q81H 1VQ5F 1VQNF 2HP0A 4YJ3B 4O4IB 3RYHB 5IYZA 2PMPA 3D00A 3JCMM 3CCMF 2YXZA 1KC8H 1PF5A 2WALA 2EWCA 3HKBA 5CA0A 3CCRF 3U0OA 3CC7F 3QTYA 1VQ6F 2VGNA 3S03A 3VOAA 3HKEB 2RHLA 1FNKA 1W5BA 3HAXD 3VYUC 3HKCA 2UZHA 1H7MA 4WBNB 5KMGB 2BTOA 3VO8A 2MQEA 5AVMA 4X1YB 4O2AA 1XHOA 1NQ3A 3B6NA 4XCQA 5EYPB 3J80M 3J81M 5J2UB 3N2GB 5MN4A 2KTVA 3QUWA 3V7QA 3ZO8A 5JQGB 1IV2A 1NMUB 1K8AH 4BVTA 3MQWA 3M4SA 3TD5A 4O4LB 3L7QA 3UT5B 3NK6A 4IIJA 1VK3A 5GANK 4F6RB 1SDSA 4U3JA 2BTUA 3FD6A 2VAWA 2CZWA 3JALA 2GZLA 3S02A 4X20A 3CMEF 3CCEF 4ZHQA 1UFYA 5HP7A 3CCJF 2VAPA 5A2QM 4O4JB 2RHJA 2Z1EA 1U43A 2PHNA 3RYCB 3D54A 3K2XA 4EI9A 3CC4F 2G9IA 1SZQA 3RYIA 1U40A 1X25A 2RB9A 3LFOA 4B45A 1U3LA 4C8GA 3V4DA 1J7HA 4X1IA 3CCSF 3JVHA 2IAFA 3N2KA 2H6LA 2I6DA 5HXZA 1VQLF 1W57A 3KJJA 1RLGA 3O85A 2CWJA 2L26A 3P4EA 4C81A 1ONIA 1M1KH 1FFXA 3SIVA 3I7TA 3OBYA 1W581 4TUYB 4EB6B 1ODEA 4U3JB 3VTIC 5BMVB 1SA0A 5JVDA 3JAKA 3WJQA 4ERHA 1VQOF 4I50A 3NVKE 3C9RA 2F9ZC 1TUBA 3CYQA 4BT4A 5FNVA 1VQ9F 2RHOA 4RHAA 1K9MH 3KE1A 1M90H 3CCLF 3LWOC 3RE3A 3F0GA 2N48A 1SA0B 2P6YA 2NMUA 3KHNA 5JVDB 4O2AB 3G4SF 1X52A 4R40B 3VMFB 4B62A 2HS4A 5ITZA 1W40A 4G88A 4ZHYB 3JARB 4YJ2A 5LXTA 2HQSC 1YQNA 4G4XA 3WPWA 4TV8B 3BYQA 1RQ7A 2VXYA 3N2KB 3DC2A 5GONB 5HY1A 2H8CA 4X1IB 5LP6C 5MN6A 4X3LA 3NMUC 5EWRA 3E22B 5LOVB 4ZHWA 2YYEA 2V9YA 2CVLA 4NQ3A 1W59A 2HVYD 4BW0B 3S0WA 2BTQB 2IQQA 3C8LA 3HJWC 2UYPA 3WGNA 3E22A 3HKDA 3HWUA 3RA6A 1KNJA 3R0PA 1XRGA 3DDNA 2GLZA 5GINC 1VH8A 5IJ9B 1JD1A 2AIZP 3IEWA 4RQOA 5HWEA 4C4WC 1CN7A 2LBXA 3WGLA 4B46A 4BT2A 5CB4A 3LYBA 4F6RA 2CHTA 2HX0A 3GTZA 5C8YB 4G4YA 1JN1A 2KTUA 3LDTA 5CA1B 3WGJA 1VQVA 1ZWZA 2CW4A 2R6R1 3FBAA 1JFFA 2FGYA 4TZZA 3I55F 1K73H 4X1YA 3UT5A 2HRYA 4BT6A 2QI2A 1S72F 5FNVB 3M1XA 3S0YA 1YJ9F 1TUBB 2K1SA 4TV9B 4TV9A 5EAZA 1YIJF 3LWQC 4IHJB 3WPXA 4BT5A 5EYPA 3IKFA 1DBFA 5EB0A 2I6RA 5ITZB 3CC2F 1IV1A 3PAFA 3Q8HA 5CA0B 4EB6A 1JFFB 3ELCA 3IMPA 5B8FA 3ESJA 1W55A 4IHJA 2Q1XA 3WJPA 4ZHVA 2OTLF 3ZP4A 3N4ZA 1FFXB 2OTJF 4BVQA 3IEQA 3JAKB 4EI7A 4FFBB 2HP3A 1FSZA 3N4YA 2Z01A 3ON1A 3S0HA 4ZI7B 1TVKB 5CA1A 3I3FA 3V3TA 1H47A 4KWEA 5DCVA 1GZ0A 3CG6A 3TD3A 5J2TA 3LWRC 3WGKA 3CCVF 5FJ4C 5CB4B 5J2TB 1COMA 3P10A 5G4UC 2ZODA 4I4TA 5LOVA 2OHWA 5G4VC 5HP8A 3GYQA 1U3PA 4B5CA 2CSLA 2ZOVA 3FD5A 1JY8A 1Z5VA 1KNKA 1GO1A 3K14A 4TV8A 5IJ0A 1QAHA 5IT9M 3F6MA 4O4HA 3G71F 4YJ2B 3CPQA 2KGWA 2OTMA 1RA4A 5JQGA 1Q7YH 2FC3A 4EI8A 2H8EA 2DYYA 1QVGF 2Z1FA 2QTPA 5HY2A 4IIJB 4C82A 1IV4A 2HRUA 5LXTB 4O4LA 3JARA 3HKCB 1YITF 3ZP7A 2LCAA 2AMTA 3QHDA 3T80A 4I50B 4X3MA 3IR9A 5GAPK 1YGYA 3LWVC 3F0FA 5LA6A 3JATB 4BVSA 2QA4F 1VQ7F 3CD6F 3NVIB 3MCQA 3CMAF 1UI9A 3AGKA 2HP0B 5KMGA 1CK2A 5C8YA 4DXDA 4ZOLA 3RYFA 3OW2F 5EB1B 3JASA 5BMVA 2ZVZA 4ZK7A 3K12A 4I55A 3HKBB 3JATA 4TUYA 5LP6B 5HXUA 3ZOPA 5IJ9A 2UYNB 5EO3A 2KG4A 3RYHA 5IYZB 3FPIA 3CXCF 1FNJA 4X1KB 3LMEA 3VCZA 1VQMF 1XV2A 3ERNA 1Z5WA 2R751 3IKEA 2JNBA 5EIBC 3RYCA 2W8BC 3C9TA 1QVFF 3SIUA 3MCAB 1VHAA 1DT9A 3VIUA 5KX5B 1W2BF 3G6EF 2Q1YA 4DRXB 5GONA 5JCOA 4G4VA 3CCUF
chains in the Genus database with same CATH topology
2PHNA 2G9IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PHN A;  2G9I A; 
#chains in the Genus database with same CATH topology
 3E1Y A;  2UYJ A;  4O4J A;  2BO1 A;  4C8I A;  1Q82 H;  2ALE A;  2ZF8 A;  3GHZ A;  3F0E A;  3PLA C;  1OFU A;  4ZHQ B;  4BT7 A;  4C8E A;  2UYK A;  4X1K A;  1W41 A;  4X20 B;  1JJ2 F;  5GIO C;  1QU9 A;  1T0K B;  4BVR A;  2VGM A;  1W5F A;  3JAL B;  3NK7 A;  3VI6 A;  1XBI A;  3C9S A;  5J2U A;  5HY4 A;  4HNA B;  4E6E A;  2CHS A;  2IG8 A;  3F0D A;  3JAS B;  5JH7 B;  1VQ4 F;  1CLI A;  2AIF A;  4NWO B;  3CYP B;  1RQ2 A;  1YI2 F;  3P0Z A;  2ZAU A;  1R1M A;  1H48 A;  2UYN A;  3CPW F;  4BY9 D;  1N8R H;  1E7K A;  5LP6 A;  1IV3 A;  3VOB A;  3N2G A;  1GO0 A;  1TVK A;  1W3E X;  4ZI7 A;  1W5E A;  4I55 B;  3HKE A;  4M8I A;  5EZY A;  1IPA A;  1W42 A;  4FFB A;  2B33 A;  5LA6 B;  3RYF B;  3JAW B;  1W5A A;  4U39 A;  4BT3 A;  4YJ3 A;  5LYJ A;  5JH7 A;  3KIZ A;  3CCQ F;  2OZB A;  3JAW A;  1Q86 H;  4HNA A;  3CB2 A;  5EZY B;  1VQK F;  3OBW A;  3J7A R;  4O4I A;  5GIP C;  1VQP F;  2Z1T A;  2GVI A;  3RYI B;  5JCO C;  2ZVY A;  3VYS C;  1GX1 A;  1QD9 A;  2LBW A;  1T0A A;  3RA5 A;  5MN5 A;  3M84 A;  3EOR A;  3KJK A;  2Z1U A;  4DRX A;  3LWP C;  4O2B B;  3D01 A;  5KX5 A;  1KQS F;  3JAM M;  3VYT C;  3I56 F;  1YJN F;  4NUT A;  3MBM A;  4LNU A;  4O4H B;  3TD4 A;  1RLU A;  5IJ0 B;  1NJI H;  4LCK A;  1YHQ F;  2LBT A;  1X7O A;  1KD1 H;  1X7P A;  4G4W A;  5EIB D;  2QEX F;  4LNU B;  3WGM A;  5FLX M;  1Q8R A;  2HS3 A;  4I4T B;  2HS0 A;  3HKD B;  1PXW A;  3WXM B;  4O2B A;  3MDO A;  4PWT A;  5HY0 A;  3HTN A;  3E20 B;  3WJR A;  1OAP A;  3S06 A;  3OON A;  2VAM A;  3K0T A;  3FFM A;  2RHH A;  4G4Z A;  4ZOL B;  4WBN A;  1YJW F;  1VQ8 F;  3V7E A;  2DT4 A;  3C9U A;  5LYJ B;  1Q81 H;  1VQ5 F;  1VQN F;  2HP0 A;  4YJ3 B;  4O4I B;  3RYH B;  5IYZ A;  2PMP A;  3D00 A;  3JCM M;  3CCM F;  2YXZ A;  1KC8 H;  1PF5 A;  2WAL A;  2EWC A;  3HKB A;  5CA0 A;  3CCR F;  3U0O A;  3CC7 F;  3QTY A;  1VQ6 F;  2VGN A;  3S03 A;  3VOA A;  3HKE B;  2RHL A;  1FNK A;  1W5B A;  3HAX D;  3VYU C;  3HKC A;  2UZH A;  1H7M A;  4WBN B;  5KMG B;  2BTO A;  3VO8 A;  2MQE A;  5AVM A;  4X1Y B;  4O2A A;  1XHO A;  1NQ3 A;  3B6N A;  4XCQ A;  5EYP B;  3J80 M;  3J81 M;  5J2U B;  3N2G B;  5MN4 A;  2KTV A;  3QUW A;  3V7Q A;  3ZO8 A;  5JQG B;  1IV2 A;  1NMU B;  1K8A H;  4BVT A;  3MQW A;  3M4S A;  3TD5 A;  4O4L B;  3L7Q A;  3UT5 B;  3NK6 A;  4IIJ A;  1VK3 A;  5GAN K;  4F6R B;  1SDS A;  4U3J A;  2BTU A;  3FD6 A;  2VAW A;  2CZW A;  3JAL A;  2GZL A;  3S02 A;  4X20 A;  3CME F;  3CCE F;  4ZHQ A;  1UFY A;  5HP7 A;  3CCJ F;  2VAP A;  5A2Q M;  4O4J B;  2RHJ A;  2Z1E A;  1U43 A;  2PHN A;  3RYC B;  3D54 A;  3K2X A;  4EI9 A;  3CC4 F;  2G9I A;  1SZQ A;  3RYI A;  1U40 A;  1X25 A;  2RB9 A;  3LFO A;  4B45 A;  1U3L A;  4C8G A;  3V4D A;  1J7H A;  4X1I A;  3CCS F;  3JVH A;  2IAF A;  3N2K A;  2H6L A;  2I6D A;  5HXZ A;  1VQL F;  1W57 A;  3KJJ A;  1RLG A;  3O85 A;  2CWJ A;  2L26 A;  3P4E A;  4C81 A;  1ONI A;  1M1K H;  1FFX A;  3SIV A;  3I7T A;  3OBY A;  1W58 1;  4TUY B;  4EB6 B;  1ODE A;  4U3J B;  3VTI C;  5BMV B;  1SA0 A;  5JVD A;  3JAK A;  3WJQ A;  4ERH A;  1VQO F;  4I50 A;  3NVK E;  3C9R A;  2F9Z C;  1TUB A;  3CYQ A;  4BT4 A;  5FNV A;  1VQ9 F;  2RHO A;  4RHA A;  1K9M H;  3KE1 A;  1M90 H;  3CCL F;  3LWO C;  3RE3 A;  3F0G A;  2N48 A;  1SA0 B;  2P6Y A;  2NMU A;  3KHN A;  5JVD B;  4O2A B;  3G4S F;  1X52 A;  4R40 B;  3VMF B;  4B62 A;  2HS4 A;  5ITZ A;  1W40 A;  4G88 A;  4ZHY B;  3JAR B;  4YJ2 A;  5LXT A;  2HQS C;  1YQN A;  4G4X A;  3WPW A;  4TV8 B;  3BYQ A;  1RQ7 A;  2VXY A;  3N2K B;  3DC2 A;  5GON B;  5HY1 A;  2H8C A;  4X1I B;  5LP6 C;  5MN6 A;  4X3L A;  3NMU C;  5EWR A;  3E22 B;  5LOV B;  4ZHW A;  2YYE A;  2V9Y A;  2CVL A;  4NQ3 A;  1W59 A;  2HVY D;  4BW0 B;  3S0W A;  2BTQ B;  2IQQ A;  3C8L A;  3HJW C;  2UYP A;  3WGN A;  3E22 A;  3HKD A;  3HWU A;  3RA6 A;  1KNJ A;  3R0P A;  1XRG A;  3DDN A;  2GLZ A;  5GIN C;  1VH8 A;  5IJ9 B;  1JD1 A;  2AIZ P;  3IEW A;  4RQO A;  5HWE A;  4C4W C;  1CN7 A;  2LBX A;  3WGL A;  4B46 A;  4BT2 A;  5CB4 A;  3LYB A;  4F6R A;  2CHT A;  2HX0 A;  3GTZ A;  5C8Y B;  4G4Y A;  1JN1 A;  2KTU A;  3LDT A;  5CA1 B;  3WGJ A;  1VQV A;  1ZWZ A;  2CW4 A;  2R6R 1;  3FBA A;  1JFF A;  2FGY A;  4TZZ A;  3I55 F;  1K73 H;  4X1Y A;  3UT5 A;  2HRY A;  4BT6 A;  2QI2 A;  1S72 F;  5FNV B;  3M1X A;  3S0Y A;  1YJ9 F;  1TUB B;  2K1S A;  4TV9 B;  4TV9 A;  5EAZ A;  1YIJ F;  3LWQ C;  4IHJ B;  3WPX A;  4BT5 A;  5EYP A;  3IKF A;  1DBF A;  5EB0 A;  2I6R A;  5ITZ B;  3CC2 F;  1IV1 A;  3PAF A;  3Q8H A;  5CA0 B;  4EB6 A;  1JFF B;  3ELC A;  3IMP A;  5B8F A;  3ESJ A;  1W55 A;  4IHJ A;  2Q1X A;  3WJP A;  4ZHV A;  2OTL F;  3ZP4 A;  3N4Z A;  1FFX B;  2OTJ F;  4BVQ A;  3IEQ A;  3JAK B;  4EI7 A;  4FFB B;  2HP3 A;  1FSZ A;  3N4Y A;  2Z01 A;  3ON1 A;  3S0H A;  4ZI7 B;  1TVK B;  5CA1 A;  3I3F A;  3V3T A;  1H47 A;  4KWE A;  5DCV A;  1GZ0 A;  3CG6 A;  3TD3 A;  5J2T A;  3LWR C;  3WGK A;  3CCV F;  5FJ4 C;  5CB4 B;  5J2T B;  1COM A;  3P10 A;  5G4U C;  2ZOD A;  4I4T A;  5LOV A;  2OHW A;  5G4V C;  5HP8 A;  3GYQ A;  1U3P A;  4B5C A;  2CSL A;  2ZOV A;  3FD5 A;  1JY8 A;  1Z5V A;  1KNK A;  1GO1 A;  3K14 A;  4TV8 A;  5IJ0 A;  1QAH A;  5IT9 M;  3F6M A;  4O4H A;  3G71 F;  4YJ2 B;  3CPQ A;  2KGW A;  2OTM A;  1RA4 A;  5JQG A;  1Q7Y H;  2FC3 A;  4EI8 A;  2H8E A;  2DYY A;  1QVG F;  2Z1F A;  2QTP A;  5HY2 A;  4IIJ B;  4C82 A;  1IV4 A;  2HRU A;  5LXT B;  4O4L A;  3JAR A;  3HKC B;  1YIT F;  3ZP7 A;  2LCA A;  2AMT A;  3QHD A;  3T80 A;  4I50 B;  4X3M A;  3IR9 A;  5GAP K;  1YGY A;  3LWV C;  3F0F A;  5LA6 A;  3JAT B;  4BVS A;  2QA4 F;  1VQ7 F;  3CD6 F;  3NVI B;  3MCQ A;  3CMA F;  1UI9 A;  3AGK A;  2HP0 B;  5KMG A;  1CK2 A;  5C8Y A;  4DXD A;  4ZOL A;  3RYF A;  3OW2 F;  5EB1 B;  3JAS A;  5BMV A;  2ZVZ A;  4ZK7 A;  3K12 A;  4I55 A;  3HKB B;  3JAT A;  4TUY A;  5LP6 B;  5HXU A;  3ZOP A;  5IJ9 A;  2UYN B;  5EO3 A;  2KG4 A;  3RYH A;  5IYZ B;  3FPI A;  3CXC F;  1FNJ A;  4X1K B;  3LME A;  3VCZ A;  1VQM F;  1XV2 A;  3ERN A;  1Z5W A;  2R75 1;  3IKE A;  2JNB A;  5EIB C;  3RYC A;  2W8B C;  3C9T A;  1QVF F;  3SIU A;  3MCA B;  1VHA A;  1DT9 A;  3VIU A;  5KX5 B;  1W2B F;  3G6E F;  2Q1Y A;  4DRX B;  5GON A;  5JCO A;  4G4V A;  3CCU F; 
#chains in the Genus database with same CATH homology
 2PHN A;  2G9I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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