2PHNA

Crystal structure of an amide bond forming f420-gamma glutamyl ligase from archaeoglobus fulgidus
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
248
structure length
248
Chain Sequence
b'RVEVFPVEGLPLIKEGDDLAELISSRVRFEDGDVLVVCSTVISKAEGRIRRLEEFNPSERAKEIAARIGKPAEFVQAVLEESEEVLLDFPFLLVKAKFGNVCVNAGIDASNVEEGSLLLPPLDPDGSAEKLRRRILELTGKRVGVIITDTNGRCFRRGVVGFAIGISGVKAMKDWIGRKDLYGRELEVTVECVADEIAAFANLLMGEGGDGIPAVVVRGLNVAGEGSMEEIYRSEEEDVIRRCLKRCL'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords F420-0:gamma-glutamyl ligase
publication title Structure of an Amide Bond Forming F(420):gammagamma-glutamyl Ligase from Archaeoglobus Fulgidus - A Member of a New Family of Non-ribosomal Peptide Synthases.
pubmed doi rcsb
source organism Archaeoglobus fulgidus dsm 4304
molecule tags Ligase
total genus 70
structure length 248
sequence length 248
chains with identical sequence B
ec nomenclature ec 6.3.2.31: Coenzyme F420-0:L-glutamate ligase.
pdb deposition date 2007-04-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01996 F420_ligase F420-0:Gamma-glutamyl ligase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1330.100 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; CofE-like 2phnA01
3.90.1660.10 Alpha Beta Alpha-Beta Complex CofE-like fold CofE-like domain 2phnA02
2G9IA 2PHNA
chains in the Genus database with same CATH superfamily
5GAPK 2IQQA 5GONB 4U3JA 1X7PA 4X1KA 3WGKA 2HRYA 3CB2A 3NMUC 4PWTA 4F6RA 4I55A 1R1MA 3TD5A 3RYHB 4O2AB 2GZLA 1IV2A 3CCVF 3WPXA 1X7OA 4DRXA 4YJ2B 4I50B 2CHTA 1M90H 1JFFB 3MQWA 5KX5B 3S0WA 5EIBD 1X25A 1CK2A 4X1IB 3P10A 4E6EA 3CC7F 4LNUA 3N4ZA 1QVFF 1T0KB 4C82A 3BYQA 3G4SF 1XRGA 4B46A 1Q81H 3CCEF 3LDTA 2IAFA 3CYPB 1U3PA 3KHNA 3QUWA 3FBAA 2QI2A 4RHAA 3K14A 2OTMA 5EIBC 2UYPA 1FSZA 1IPAA 2KTUA 3ON1A 3F6MA 3IR9A 2AIFA 5IYZB 4WBNB 1K8AH 3RYCB 3HKEB 5HY0A 1JJ2F 3IEQA 4BVQA 1W40A 5LA6B 4IIJB 3KE1A 3S02A 1J7HA 4RQOA 3OW2F 3M1XA 5FNVB 2P6YA 4ZHQA 1JD1A 3EORA 1KNKA 4TV9B 4X20A 5HXZA 2QTPA 3KIZA 3V4DA 1SA0B 2HQSC 2RHJA 1VQLF 2R6R1 3C9TA 4XCQA 3WJQA 2RHHA 1VHAA 3ERNA 5JVDB 3CCUF 1KD1H 3CC2F 3ZP7A 3JVHA 2LBXA 3P4EA 4NUTA 3LWVC 3HTNA 3JASA 5LP6A 4ZHYB 3CMAF 3C9UA 1Z5WA 1ODEA 3TD3A 3LFOA 1TVKB 4ZOLA 5EAZA 3JALB 4TV8B 1ZWZA 2HP0A 4C8IA 5EWRA 5C8YB 2PMPA 4C4WC 5MN4A 2JNBA 5LYJB 3F0FA 3G6EF 1ONIA 5B8FA 3V7QA 5KMGB 2CZWA 4C8GA 2UYNB 1DBFA 2HVYD 3I7TA 3WGMA 3C8LA 3R0PA 4BVTA 3CCSF 1COMA 3JCMM 2OHWA 1YJWF 3FD6A 4O4HB 1Z5VA 3N2GA 2LCAA 1SDSA 4X3LA 4EB6B 3VIUA 3WGJA 3ESJA 2CWJA 2R751 3HKCB 1VQOF 4B45A 3RA5A 2H6LA 3E1YA 3RYFA 3CPWF 3GTZA 4O4LB 1VQ4F 2B33A 2UYJA 3JAWA 1VK3A 4G4ZA 3F0DA 2HS0A 1XBIA 1W41A 2FC3A 5J2UA 5JH7B 1YJNF 4G4VA 5DCVA 3FD5A 5JCOC 1QVGF 2IG8A 5CA0B 3UT5B 3HWUA 3M84A 2ALEA 5EZYB 3LWQC 5CB4A 1VQPF 1SZQA 1DT9A 3N2KA 3QHDA 4I4TB 1K73H 3JARA 5IJ0A 4B62A 2ZF8A 1JY8A 4TUYA 3NVKE 3HKDB 2VGNA 3NK7A 3VCZA 3HJWC 5LXTB 4O4JB 3GHZA 4O2BA 5JQGA 3VYUC 3JAKB 3L7QA 3VO8A 5GONA 1VQKF 1GX1A 2HS4A 3S06A 5HY2A 1K9MH 4R40B 5FJ4C 3WJPA 3ZO8A 4X1YB 4BVSA 2Z1TA 1T0AA 2G9IA 2VAMA 3V3TA 2Z1UA 2VXYA 3RYHA 1IV3A 1RLGA 4LCKA 1U3LA 3F0GA 5IT9M 1W55A 4YJ2A 4I50A 3CXCF 3RYIB 5ITZB 1YITF 1NMUB 4C8EA 5HWEA 1JFFA 5KX5A 3VYSC 2I6DA 1GO0A 2Q1YA 4O4IB 4X1IA 1FFXB 4YJ3B 3WXMB 1CN7A 2Z1EA 3DDNA 3VMFB 3WJRA 2YXZA 4G4XA 2RHOA 3HKBB 1QU9A 2Q1XA 1CLIA 2UYKA 2VGMA 2KGWA 2WALA 1FNJA 4EI7A 1VQ7F 3I55F 5GIOC 1YI2F 5IYZA 4WBNA 2W8BC 3KJJA 3RYCA 3HKEA 3G71F 3I3FA 3F0EA 3OBWA 4C81A 3E20B 5LA6A 5IJ9B 4IIJA 2K1SA 1W3EX 3K0TA 3E22B 3RE3A 2FGYA 1PF5A 3MBMA 4TV9A 5LOVB 3PLAC 1M1KH 1SA0A 3ZOPA 2AMTA 1NQ3A 3V7EA 1X52A 2VAPA 4HNAB 4FFBB 2QEXF 1H48A 1W59A 2CHSA 5CA1A 3VYTC 5JVDA 5JQGB 3S0YA 2VAWA 3KJKA 1KQSF 3GYQA 2BTUA 5GIPC 5BMVB 4NWOB 4B5CA 3J7AR 3NVIB 2CSLA 1YIJF 4BY9D 1VQMF 1VQ8F 4BT4A 1TVKA 3JALA 3QTYA 3OONA 3ZP4A 2DYYA 5C8YA 3CPQA 1RLUA 2CVLA 3LWPC 2I6RA 1IV1A 2HP3A 5GINC 1YJ9F 4G4WA 3JATB 5KMGA 3VTIC 2GVIA 1GO1A 5J2TB 1Q82H 1IV4A 3C9RA 3MDOA 5EO3A 3MCQA 4BT3A 4O4HA 2KTVA 4EB6A 3HKCA 4IHJA 5JCOA 3J81M 5HY1A 3I56F 1H7MA 5EYPB 3LMEA 4ZI7B 4BT6A 2Z1FA 1VH8A 3U0OA 4O4LA 2PHNA 3J80M 2LBTA 1KC8H 3IKEA 3LWOC 1RQ7A 2EWCA 3JAMM 5JH7A 2MQEA 1S72F 5G4UC 3VI6A 5CA0A 1TUBB 3UT5A 5EZYA 5HP7A 3ELCA 1PXWA 1W57A 4U3JB 1QD9A 2HS3A 2ZOVA 2ZODA 4I4TA 4X1KB 2L26A 2KG4A 3HKDA 4F6RB 5G4VC 5LXTA 4I55B 1N8RH 4O4JA 1W581 1W2BF 1Q8RA 3JAKA 4BW0B 4O2AA 4DRXB 1RA4A 2N48A 3RA6A 4U39A 4KWEA 3CCLF 2DT4A 4X1YA 3CCRF 2Z01A 1RQ2A 2V9YA 3WGNA 4LNUB 3CYQA 4EI8A 2UZHA 1W5BA 1VQ9F 5HY4A 1YQNA 3IEWA 3PAFA 3B6NA 3D01A 2HX0A 3RYIA 5ITZA 4G4YA 4O4IA 5EB1B 1FFXA 4YJ3A 1UFYA 2NMUA 2ZVYA 3CG6A 1OFUA 2RHLA 3HKBA 4BT5A 1FNKA 4ZHWA 1GZ0A 4X3MA 5HXUA 3M4SA 5MN5A 4ZHQB 4X20B 1XV2A 5FNVA 3DC2A 5AVMA 5EB0A 3WGLA 2GLZA 1Q7YH 1VQVA 2QA4F 3SIVA 2BO1A 5IJ9A 2HRUA 1Q86H 4DXDA 3E22A 4TZZA 5GANK 3N4YA 3VOBA 3SIUA 3LYBA 5LOVA 1YGYA 3JASB 2LBWA 5LP6B 3K2XA 1W42A 1KNJA 3P0ZA 2BTOA 1VQNF 5CA1B 4HNAA 4FFBA 4ZOLB 3TD4A 3K12A 4ERHA 3C9SA 3CCQF 2HP0B 1OAPA 4TV8A 4BVRA 1XHOA 4NQ3A 5LP6C 2AIZP 5BMVA 5LYJA 5MN6A 2F9ZC 2H8EA 4BT7A 1JN1A 3CMEF 1U43A 2UYNA 3AGKA 5FLXM 1VQ6F 1VQ5F 1W5AA 4BT2A 3LWRC 3N2GB 2OTLF 2CW4A 1E7KA 3JATA 3O85A 4ZHVA 5J2TA 3RYFB 3Q8HA 2OTJF 2ZVZA 3FFMA 3S0HA 4EI9A 2ZAUA 1H47A 5HP8A 2H8CA 3OBYA 3JAWB 3IKFA 2RB9A 2OZBA 1QAHA 4IHJB 5J2UB 3IMPA 1W5EA 3D00A 3CD6F 3HAXD 3D54A 2YYEA 1UI9A 1W5FA 5CB4B 5EYPA 4ZK7A 4ZI7A 4M8IA 3CCMF 1YHQF 3N2KB 2BTQB 3FPIA 3WPWA 3CC4F 3JARB 5IJ0B 1U40A 3MCAB 4TUYB 3T80A 4G88A 3NK6A 3VOAA 5A2QM 3CCJF 1NJIH 4O2BB 3S03A 1TUBA
chains in the Genus database with same CATH topology
2G9IA 2PHNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2G9I A;  2PHN A; 
#chains in the Genus database with same CATH topology
 5GAP K;  2IQQ A;  5GON B;  4U3J A;  1X7P A;  4X1K A;  3WGK A;  2HRY A;  3CB2 A;  3NMU C;  4PWT A;  4F6R A;  4I55 A;  1R1M A;  3TD5 A;  3RYH B;  4O2A B;  2GZL A;  1IV2 A;  3CCV F;  3WPX A;  1X7O A;  4DRX A;  4YJ2 B;  4I50 B;  2CHT A;  1M90 H;  1JFF B;  3MQW A;  5KX5 B;  3S0W A;  5EIB D;  1X25 A;  1CK2 A;  4X1I B;  3P10 A;  4E6E A;  3CC7 F;  4LNU A;  3N4Z A;  1QVF F;  1T0K B;  4C82 A;  3BYQ A;  3G4S F;  1XRG A;  4B46 A;  1Q81 H;  3CCE F;  3LDT A;  2IAF A;  3CYP B;  1U3P A;  3KHN A;  3QUW A;  3FBA A;  2QI2 A;  4RHA A;  3K14 A;  2OTM A;  5EIB C;  2UYP A;  1FSZ A;  1IPA A;  2KTU A;  3ON1 A;  3F6M A;  3IR9 A;  2AIF A;  5IYZ B;  4WBN B;  1K8A H;  3RYC B;  3HKE B;  5HY0 A;  1JJ2 F;  3IEQ A;  4BVQ A;  1W40 A;  5LA6 B;  4IIJ B;  3KE1 A;  3S02 A;  1J7H A;  4RQO A;  3OW2 F;  3M1X A;  5FNV B;  2P6Y A;  4ZHQ A;  1JD1 A;  3EOR A;  1KNK A;  4TV9 B;  4X20 A;  5HXZ A;  2QTP A;  3KIZ A;  3V4D A;  1SA0 B;  2HQS C;  2RHJ A;  1VQL F;  2R6R 1;  3C9T A;  4XCQ A;  3WJQ A;  2RHH A;  1VHA A;  3ERN A;  5JVD B;  3CCU F;  1KD1 H;  3CC2 F;  3ZP7 A;  3JVH A;  2LBX A;  3P4E A;  4NUT A;  3LWV C;  3HTN A;  3JAS A;  5LP6 A;  4ZHY B;  3CMA F;  3C9U A;  1Z5W A;  1ODE A;  3TD3 A;  3LFO A;  1TVK B;  4ZOL A;  5EAZ A;  3JAL B;  4TV8 B;  1ZWZ A;  2HP0 A;  4C8I A;  5EWR A;  5C8Y B;  2PMP A;  4C4W C;  5MN4 A;  2JNB A;  5LYJ B;  3F0F A;  3G6E F;  1ONI A;  5B8F A;  3V7Q A;  5KMG B;  2CZW A;  4C8G A;  2UYN B;  1DBF A;  2HVY D;  3I7T A;  3WGM A;  3C8L A;  3R0P A;  4BVT A;  3CCS F;  1COM A;  3JCM M;  2OHW A;  1YJW F;  3FD6 A;  4O4H B;  1Z5V A;  3N2G A;  2LCA A;  1SDS A;  4X3L A;  4EB6 B;  3VIU A;  3WGJ A;  3ESJ A;  2CWJ A;  2R75 1;  3HKC B;  1VQO F;  4B45 A;  3RA5 A;  2H6L A;  3E1Y A;  3RYF A;  3CPW F;  3GTZ A;  4O4L B;  1VQ4 F;  2B33 A;  2UYJ A;  3JAW A;  1VK3 A;  4G4Z A;  3F0D A;  2HS0 A;  1XBI A;  1W41 A;  2FC3 A;  5J2U A;  5JH7 B;  1YJN F;  4G4V A;  5DCV A;  3FD5 A;  5JCO C;  1QVG F;  2IG8 A;  5CA0 B;  3UT5 B;  3HWU A;  3M84 A;  2ALE A;  5EZY B;  3LWQ C;  5CB4 A;  1VQP F;  1SZQ A;  1DT9 A;  3N2K A;  3QHD A;  4I4T B;  1K73 H;  3JAR A;  5IJ0 A;  4B62 A;  2ZF8 A;  1JY8 A;  4TUY A;  3NVK E;  3HKD B;  2VGN A;  3NK7 A;  3VCZ A;  3HJW C;  5LXT B;  4O4J B;  3GHZ A;  4O2B A;  5JQG A;  3VYU C;  3JAK B;  3L7Q A;  3VO8 A;  5GON A;  1VQK F;  1GX1 A;  2HS4 A;  3S06 A;  5HY2 A;  1K9M H;  4R40 B;  5FJ4 C;  3WJP A;  3ZO8 A;  4X1Y B;  4BVS A;  2Z1T A;  1T0A A;  2G9I A;  2VAM A;  3V3T A;  2Z1U A;  2VXY A;  3RYH A;  1IV3 A;  1RLG A;  4LCK A;  1U3L A;  3F0G A;  5IT9 M;  1W55 A;  4YJ2 A;  4I50 A;  3CXC F;  3RYI B;  5ITZ B;  1YIT F;  1NMU B;  4C8E A;  5HWE A;  1JFF A;  5KX5 A;  3VYS C;  2I6D A;  1GO0 A;  2Q1Y A;  4O4I B;  4X1I A;  1FFX B;  4YJ3 B;  3WXM B;  1CN7 A;  2Z1E A;  3DDN A;  3VMF B;  3WJR A;  2YXZ A;  4G4X A;  2RHO A;  3HKB B;  1QU9 A;  2Q1X A;  1CLI A;  2UYK A;  2VGM A;  2KGW A;  2WAL A;  1FNJ A;  4EI7 A;  1VQ7 F;  3I55 F;  5GIO C;  1YI2 F;  5IYZ A;  4WBN A;  2W8B C;  3KJJ A;  3RYC A;  3HKE A;  3G71 F;  3I3F A;  3F0E A;  3OBW A;  4C81 A;  3E20 B;  5LA6 A;  5IJ9 B;  4IIJ A;  2K1S A;  1W3E X;  3K0T A;  3E22 B;  3RE3 A;  2FGY A;  1PF5 A;  3MBM A;  4TV9 A;  5LOV B;  3PLA C;  1M1K H;  1SA0 A;  3ZOP A;  2AMT A;  1NQ3 A;  3V7E A;  1X52 A;  2VAP A;  4HNA B;  4FFB B;  2QEX F;  1H48 A;  1W59 A;  2CHS A;  5CA1 A;  3VYT C;  5JVD A;  5JQG B;  3S0Y A;  2VAW A;  3KJK A;  1KQS F;  3GYQ A;  2BTU A;  5GIP C;  5BMV B;  4NWO B;  4B5C A;  3J7A R;  3NVI B;  2CSL A;  1YIJ F;  4BY9 D;  1VQM F;  1VQ8 F;  4BT4 A;  1TVK A;  3JAL A;  3QTY A;  3OON A;  3ZP4 A;  2DYY A;  5C8Y A;  3CPQ A;  1RLU A;  2CVL A;  3LWP C;  2I6R A;  1IV1 A;  2HP3 A;  5GIN C;  1YJ9 F;  4G4W A;  3JAT B;  5KMG A;  3VTI C;  2GVI A;  1GO1 A;  5J2T B;  1Q82 H;  1IV4 A;  3C9R A;  3MDO A;  5EO3 A;  3MCQ A;  4BT3 A;  4O4H A;  2KTV A;  4EB6 A;  3HKC A;  4IHJ A;  5JCO A;  3J81 M;  5HY1 A;  3I56 F;  1H7M A;  5EYP B;  3LME A;  4ZI7 B;  4BT6 A;  2Z1F A;  1VH8 A;  3U0O A;  4O4L A;  2PHN A;  3J80 M;  2LBT A;  1KC8 H;  3IKE A;  3LWO C;  1RQ7 A;  2EWC A;  3JAM M;  5JH7 A;  2MQE A;  1S72 F;  5G4U C;  3VI6 A;  5CA0 A;  1TUB B;  3UT5 A;  5EZY A;  5HP7 A;  3ELC A;  1PXW A;  1W57 A;  4U3J B;  1QD9 A;  2HS3 A;  2ZOV A;  2ZOD A;  4I4T A;  4X1K B;  2L26 A;  2KG4 A;  3HKD A;  4F6R B;  5G4V C;  5LXT A;  4I55 B;  1N8R H;  4O4J A;  1W58 1;  1W2B F;  1Q8R A;  3JAK A;  4BW0 B;  4O2A A;  4DRX B;  1RA4 A;  2N48 A;  3RA6 A;  4U39 A;  4KWE A;  3CCL F;  2DT4 A;  4X1Y A;  3CCR F;  2Z01 A;  1RQ2 A;  2V9Y A;  3WGN A;  4LNU B;  3CYQ A;  4EI8 A;  2UZH A;  1W5B A;  1VQ9 F;  5HY4 A;  1YQN A;  3IEW A;  3PAF A;  3B6N A;  3D01 A;  2HX0 A;  3RYI A;  5ITZ A;  4G4Y A;  4O4I A;  5EB1 B;  1FFX A;  4YJ3 A;  1UFY A;  2NMU A;  2ZVY A;  3CG6 A;  1OFU A;  2RHL A;  3HKB A;  4BT5 A;  1FNK A;  4ZHW A;  1GZ0 A;  4X3M A;  5HXU A;  3M4S A;  5MN5 A;  4ZHQ B;  4X20 B;  1XV2 A;  5FNV A;  3DC2 A;  5AVM A;  5EB0 A;  3WGL A;  2GLZ A;  1Q7Y H;  1VQV A;  2QA4 F;  3SIV A;  2BO1 A;  5IJ9 A;  2HRU A;  1Q86 H;  4DXD A;  3E22 A;  4TZZ A;  5GAN K;  3N4Y A;  3VOB A;  3SIU A;  3LYB A;  5LOV A;  1YGY A;  3JAS B;  2LBW A;  5LP6 B;  3K2X A;  1W42 A;  1KNJ A;  3P0Z A;  2BTO A;  1VQN F;  5CA1 B;  4HNA A;  4FFB A;  4ZOL B;  3TD4 A;  3K12 A;  4ERH A;  3C9S A;  3CCQ F;  2HP0 B;  1OAP A;  4TV8 A;  4BVR A;  1XHO A;  4NQ3 A;  5LP6 C;  2AIZ P;  5BMV A;  5LYJ A;  5MN6 A;  2F9Z C;  2H8E A;  4BT7 A;  1JN1 A;  3CME F;  1U43 A;  2UYN A;  3AGK A;  5FLX M;  1VQ6 F;  1VQ5 F;  1W5A A;  4BT2 A;  3LWR C;  3N2G B;  2OTL F;  2CW4 A;  1E7K A;  3JAT A;  3O85 A;  4ZHV A;  5J2T A;  3RYF B;  3Q8H A;  2OTJ F;  2ZVZ A;  3FFM A;  3S0H A;  4EI9 A;  2ZAU A;  1H47 A;  5HP8 A;  2H8C A;  3OBY A;  3JAW B;  3IKF A;  2RB9 A;  2OZB A;  1QAH A;  4IHJ B;  5J2U B;  3IMP A;  1W5E A;  3D00 A;  3CD6 F;  3HAX D;  3D54 A;  2YYE A;  1UI9 A;  1W5F A;  5CB4 B;  5EYP A;  4ZK7 A;  4ZI7 A;  4M8I A;  3CCM F;  1YHQ F;  3N2K B;  2BTQ B;  3FPI A;  3WPW A;  3CC4 F;  3JAR B;  5IJ0 B;  1U40 A;  3MCA B;  4TUY B;  3T80 A;  4G88 A;  3NK6 A;  3VOA A;  5A2Q M;  3CCJ F;  1NJI H;  4O2B B;  3S03 A;  1TUB A; 
#chains in the Genus database with same CATH homology
 2G9I A;  2PHN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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