2PHNA

Crystal structure of an amide bond forming f420-gamma glutamyl ligase from archaeoglobus fulgidus
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
248
structure length
248
Chain Sequence
RVEVFPVEGLPLIKEGDDLAELISSRVRFEDGDVLVVCSTVISKAEGRIRRLEEFNPSERAKEIAARIGKPAEFVQAVLEESEEVLLDFPFLLVKAKFGNVCVNAGIDASNVEEGSLLLPPLDPDGSAEKLRRRILELTGKRVGVIITDTNGRCFRRGVVGFAIGISGVKAMKDWIGRKDLYGRELEVTVECVADEIAAFANLLMGEGGDGIPAVVVRGLNVAGEGSMEEIYRSEEEDVIRRCLKRCL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligase
molecule keywords F420-0:gamma-glutamyl ligase
publication title Structure of an Amide Bond Forming F(420):gammagamma-glutamyl Ligase from Archaeoglobus Fulgidus - A Member of a New Family of Non-ribosomal Peptide Synthases.
pubmed doi rcsb
source organism Archaeoglobus fulgidus dsm 4304
total genus 70
structure length 248
sequence length 248
chains with identical sequence B
ec nomenclature ec 6.3.2.31: Coenzyme F420-0:L-glutamate ligase.
pdb deposition date 2007-04-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01996 F420_ligase F420-0:Gamma-glutamyl ligase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1330.100 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; CofE-like 2phnA01
3.90.1660.10 Alpha Beta Alpha-Beta Complex CofE-like fold CofE-like domain 2phnA02
2PHNA 2G9IA
chains in the Genus database with same CATH superfamily
1SA0B 1VQKF 1M90H 3HKEA 3JARB 4I55B 2BTQB 3E20B 3JAWB 1W55A 3LYBA 4G4YA 4YJ2A 1YJ9F 2RHJA 3NVKE 3CYQA 4B45A 4M8IA 3RYFA 1DT9A 3RYHA 5JQGB 4IHJA 3CC2F 3CCJF 5HWEA 1Q7YH 3V7EA 4TV9A 1CN7A 1Q81H 2Q1XA 2DT4A 2GZLA 2EWCA 3IR9A 4ZOLB 5JCOC 3LWVC 3VOBA 2CVLA 3ERNA 5CA0B 2GVIA 1Z5WA 5HXZA 3NMUC 3UT5A 4HNAA 4BVTA 4X1IA 3VI6A 1RQ2A 3N2GA 3RYCB 1H48A 3QTYA 5HY4A 2YXZA 3F6MA 4U3JB 1TVKB 2JNBA 1OAPA 3IEQA 3LWRC 5HP8A 1IV2A 2RB9A 3VIUA 5HY0A 2HP0A 3K14A 4C81A 3FD6A 3C9TA 1U43A 5A2QM 1YJWF 5EWRA 2RHLA 2YYEA 2IG8A 3ZP7A 5IJ9B 4O4JA 5G4VC 4O4HA 2Z1FA 3CCEF 1Q86H 5J2TA 3MQWA 2ALEA 5LXTA 3CPWF 2Z1TA 3VCZA 5AVMA 1R1MA 3HKEB 1QVGF 2R751 1Q82H 3JVHA 2H8CA 3ZOPA 4YJ2B 1RA4A 4G4ZA 5JH7A 2PMPA 5DCVA 3RE3A 5BMVA 3RYFB 3J7AR 1W40A 3AGKA 4ZI7A 5HXUA 4I4TA 4IHJB 3LWPC 3CC7F 4I50A 3KE1A 4TV9B 1X7PA 4C8IA 1COMA 1W581 2ZVYA 5ITZA 1U3PA 1W2BF 3JALA 3CMEF 4ZHYB 3Q8HA 1VQVA 2VAPA 1JD1A 1KNJA 3CYPB 1JFFA 3ON1A 3UT5B 4DXDA 2OHWA 3BYQA 4HNAB 4LCKA 2CHSA 2VGMA 4TUYA 4X1IB 3N2GB 2BTUA 4C82A 5IYZA 1PF5A 3ZP4A 3N2KA 2UZHA 3HKDA 3HWUA 4YJ3A 3TD3A 4X20A 1W5BA 3CCVF 1CK2A 2HX0A 2V9YA 3FPIA 4F6RA 5J2UA 1VQPF 3I56F 4IIJA 3MDOA 3TD5A 1FNKA 5HY1A 1K9MH 4BY9D 3F0EA 5JCOA 2QA4F 5LP6C 2UYNA 1M1KH 2OZBA 1X52A 3S06A 1GX1A 1JY8A 5IJ0A 2AIZP 3C9RA 3CCQF 4O4JB 4O4HB 1ODEA 5J2TB 3CCSF 5LXTB 2Q1YA 2ZODA 4B46A 5FJ4C 5KMGA 3JAKA 1S72F 3VOAA 1NQ3A 2CW4A 1W57A 2HP3A 3NVIB 5JH7B 3HJWC 2H6LA 1FSZA 1QAHA 1YGYA 3WGKA 3KJJA 3GTZA 2VGNA 5BMVB 2AMTA 4ZI7B 4I4TB 1FNJA 3F0GA 4NWOB 2LBWA 4EB6A 3VTIC 5KX5A 2I6DA 3VMFB 3JALB 4X3LA 4C8GA 3WPWA 2AIFA 3WPXA 4B5CA 1YI2F 3IMPA 3I3FA 1X7OA 5EYPA 4EI9A 1YIJF 1ONIA 1DBFA 3D00A 1H7MA 1JFFB 3RYIA 2DYYA 1VQNF 1PXWA 3U0OA 3CC4F 1RQ7A 4XCQA 4TUYB 1QVFF 4EI8A 5MN4A 3QUWA 1VQ8F 5IYZB 2K1SA 5CB4A 3N2KB 2VAMA 3HKDB 4YJ3B 4WBNA 4X20B 4C8EA 5GAPK 5GANK 3MCQA 4O4IA 3S02A 1VK3A 4X1KA 5J2UB 3E22A 3VO8A 4IIJB 3S0YA 3CG6A 3P0ZA 5GIPC 2UYPA 1JJ2F 1W3EX 2ZAUA 2ZF8A 4R40B 3QHDA 1W5EA 3M1XA 4O2AA 2UYNB 3NK7A 4BT7A 2PHNA 1TUBB 1GO1A 2Z1EA 3ZO8A 1YITF 3WJRA 5IJ0B 1CLIA 2FC3A 3CCUF 5GIOC 5GONA 2L26A 2VAWA 3HKBA 4TV8A 1IV4A 3CCRF 2HRUA 1N8RH 4ZHQA 4X1YA 5LYJA 2UYJA 2LBXA 3JAKB 4G4WA 3K0TA 3OONA 3LWOC 3JATA 3S0WA 5LOVA 5LP6A 4EB6B 3HKCA 1U3LA 1VQ7F 3RYHB 1VQLF 3WGJA 1YQNA 3O85A 3SIUA 4O2BA 3C8LA 5G4UC 2IAFA 1VQOF 3FBAA 2OTJF 2NMUA 1VQ6F 1NMUB 3EORA 1KD1H 1SZQA 3J81M 3VYTC 3N4YA 3T80A 1VHAA 3FD5A 2HQSC 3MBMA 4FFBA 5EIBC 5HY2A 3TD4A 4I55A 4WBNB 4C4WC 4O4IB 4BT5A 5EO3A 4X1KB 4BT2A 3E22B 1FFXA 5CA1A 3HTNA 5IT9M 1RLUA 4O2AB 2KGWA 4KWEA 2BO1A 4G4VA 2HP0B 1NJIH 4ZOLA 5GONB 1SDSA 5EB1B 4TV8B 3K12A 4ZHQB 4X1YB 3CMAF 5LYJB 1VQ5F 2F9ZC 5LA6A 3LDTA 4NUTA 3P4EA 5JVDA 3SIVA 3JATB 5LOVB 3L7QA 5LP6B 3E1YA 3HKCB 1YJNF 1IV1A 2OTLF 4I50B 3B6NA 4PWTA 2IQQA 4BW0B 1GO0A 3OW2F 5ITZB 3G4SF 2N48A 3WJPA 5HP7A 2W8BC 2QI2A 3CXCF 4X3MA 1W42A 3GHZA 3GYQA 4FFBB 3CD6F 3ELCA 5EIBD 1RLGA 4DRXA 1K8AH 5GINC 3LWQC 3KHNA 3P10A 3I7TA 1XV2A 3FFMA 3NK6A 3C9UA 3I55F 3F0DA 1FFXB 4LNUA 4BVSA 5CA1B 3D54A 3IKFA 2OTMA 3CB2A 1VQ9F 2CZWA 2HVYD 4RQOA 3MCAB 1IPAA 1YHQF 1VH8A 4ZHVA 4F6RB 1W5FA 1QD9A 1UFYA 4BT3A 2Z01A 1H47A 1XBIA 3V3TA 2CSLA 1UI9A 4G4XA 3VYUC 2VXYA 4ERHA 4ZK7A 2LCAA 3CCLF 2HS3A 3CCMF 5EZYA 3ESJA 3M84A 3G6EF 3R0PA 3OBYA 3J80M 2HS4A 5LA6B 2MQEA 5EAZA 5JVDB 5KMGB 3V7QA 1W5AA 3LMEA 2LBTA 1XRGA 3IEWA 4O4LA 2BTOA 3KJKA 2H8EA 2QEXF 3G71F 2UYKA 2GLZA 3PLAC 2CHTA 3JASA 2QTPA 2ZVZA 5FNVA 1K73H 5KX5B 3JAMM 5EB0A 3WJQA 3WGLA 3DDNA 4BVRA 1ZWZA 2HRYA 5EYPB 1XHOA 5C8YA 3CPQA 3WGMA 2WALA 3RYIB 3D01A 4DRXB 4EI7A 3LFOA 1VQ4F 1SA0A 3F0FA 4U39A 2ZOVA 4LNUB 5CB4B 3JARA 1KNKA 2CWJA 3S0HA 3JAWA 4TZZA 1W41A 2FGYA 3C9SA 1GZ0A 4E6EA 3HAXD 1QU9A 1T0KB 1E7KA 5JQGA 3JCMM 1T0AA 2RHHA 1Z5VA 3K2XA 1J7HA 3N4ZA 2KG4A 5B8FA 5EZYB 1X25A 3M4SA 3HKBB 5CA0A 4BT6A 1Q8RA 4BT4A 4BVQA 5MN5A 1U40A 3OBWA 3IKEA 2HS0A 3WGNA 4B62A 4O4LB 4NQ3A 3RYCA 1IV3A 2G9IA 3DC2A 1VQMF 2I6RA 3S03A 2B33A 2KTVA 4U3JA 1W59A 1TVKA 3JASB 5MN6A 2Z1UA 1TUBA 1JN1A 5FNVB 3VYSC 2KTUA 2P6YA 1KQSF 4O2BB 5C8YB 3WXMB 5IJ9A 3KIZA 3PAFA 3V4DA 5FLXM 4RHAA 4ZHWA 4G88A 1OFUA 3RA5A 1KC8H 2R6R1 2RHOA 3RA6A
chains in the Genus database with same CATH topology
2PHNA 2G9IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PHN A;  2G9I A; 
#chains in the Genus database with same CATH topology
 1SA0 B;  1VQK F;  1M90 H;  3HKE A;  3JAR B;  4I55 B;  2BTQ B;  3E20 B;  3JAW B;  1W55 A;  3LYB A;  4G4Y A;  4YJ2 A;  1YJ9 F;  2RHJ A;  3NVK E;  3CYQ A;  4B45 A;  4M8I A;  3RYF A;  1DT9 A;  3RYH A;  5JQG B;  4IHJ A;  3CC2 F;  3CCJ F;  5HWE A;  1Q7Y H;  3V7E A;  4TV9 A;  1CN7 A;  1Q81 H;  2Q1X A;  2DT4 A;  2GZL A;  2EWC A;  3IR9 A;  4ZOL B;  5JCO C;  3LWV C;  3VOB A;  2CVL A;  3ERN A;  5CA0 B;  2GVI A;  1Z5W A;  5HXZ A;  3NMU C;  3UT5 A;  4HNA A;  4BVT A;  4X1I A;  3VI6 A;  1RQ2 A;  3N2G A;  3RYC B;  1H48 A;  3QTY A;  5HY4 A;  2YXZ A;  3F6M A;  4U3J B;  1TVK B;  2JNB A;  1OAP A;  3IEQ A;  3LWR C;  5HP8 A;  1IV2 A;  2RB9 A;  3VIU A;  5HY0 A;  2HP0 A;  3K14 A;  4C81 A;  3FD6 A;  3C9T A;  1U43 A;  5A2Q M;  1YJW F;  5EWR A;  2RHL A;  2YYE A;  2IG8 A;  3ZP7 A;  5IJ9 B;  4O4J A;  5G4V C;  4O4H A;  2Z1F A;  3CCE F;  1Q86 H;  5J2T A;  3MQW A;  2ALE A;  5LXT A;  3CPW F;  2Z1T A;  3VCZ A;  5AVM A;  1R1M A;  3HKE B;  1QVG F;  2R75 1;  1Q82 H;  3JVH A;  2H8C A;  3ZOP A;  4YJ2 B;  1RA4 A;  4G4Z A;  5JH7 A;  2PMP A;  5DCV A;  3RE3 A;  5BMV A;  3RYF B;  3J7A R;  1W40 A;  3AGK A;  4ZI7 A;  5HXU A;  4I4T A;  4IHJ B;  3LWP C;  3CC7 F;  4I50 A;  3KE1 A;  4TV9 B;  1X7P A;  4C8I A;  1COM A;  1W58 1;  2ZVY A;  5ITZ A;  1U3P A;  1W2B F;  3JAL A;  3CME F;  4ZHY B;  3Q8H A;  1VQV A;  2VAP A;  1JD1 A;  1KNJ A;  3CYP B;  1JFF A;  3ON1 A;  3UT5 B;  4DXD A;  2OHW A;  3BYQ A;  4HNA B;  4LCK A;  2CHS A;  2VGM A;  4TUY A;  4X1I B;  3N2G B;  2BTU A;  4C82 A;  5IYZ A;  1PF5 A;  3ZP4 A;  3N2K A;  2UZH A;  3HKD A;  3HWU A;  4YJ3 A;  3TD3 A;  4X20 A;  1W5B A;  3CCV F;  1CK2 A;  2HX0 A;  2V9Y A;  3FPI A;  4F6R A;  5J2U A;  1VQP F;  3I56 F;  4IIJ A;  3MDO A;  3TD5 A;  1FNK A;  5HY1 A;  1K9M H;  4BY9 D;  3F0E A;  5JCO A;  2QA4 F;  5LP6 C;  2UYN A;  1M1K H;  2OZB A;  1X52 A;  3S06 A;  1GX1 A;  1JY8 A;  5IJ0 A;  2AIZ P;  3C9R A;  3CCQ F;  4O4J B;  4O4H B;  1ODE A;  5J2T B;  3CCS F;  5LXT B;  2Q1Y A;  2ZOD A;  4B46 A;  5FJ4 C;  5KMG A;  3JAK A;  1S72 F;  3VOA A;  1NQ3 A;  2CW4 A;  1W57 A;  2HP3 A;  3NVI B;  5JH7 B;  3HJW C;  2H6L A;  1FSZ A;  1QAH A;  1YGY A;  3WGK A;  3KJJ A;  3GTZ A;  2VGN A;  5BMV B;  2AMT A;  4ZI7 B;  4I4T B;  1FNJ A;  3F0G A;  4NWO B;  2LBW A;  4EB6 A;  3VTI C;  5KX5 A;  2I6D A;  3VMF B;  3JAL B;  4X3L A;  4C8G A;  3WPW A;  2AIF A;  3WPX A;  4B5C A;  1YI2 F;  3IMP A;  3I3F A;  1X7O A;  5EYP A;  4EI9 A;  1YIJ F;  1ONI A;  1DBF A;  3D00 A;  1H7M A;  1JFF B;  3RYI A;  2DYY A;  1VQN F;  1PXW A;  3U0O A;  3CC4 F;  1RQ7 A;  4XCQ A;  4TUY B;  1QVF F;  4EI8 A;  5MN4 A;  3QUW A;  1VQ8 F;  5IYZ B;  2K1S A;  5CB4 A;  3N2K B;  2VAM A;  3HKD B;  4YJ3 B;  4WBN A;  4X20 B;  4C8E A;  5GAP K;  5GAN K;  3MCQ A;  4O4I A;  3S02 A;  1VK3 A;  4X1K A;  5J2U B;  3E22 A;  3VO8 A;  4IIJ B;  3S0Y A;  3CG6 A;  3P0Z A;  5GIP C;  2UYP A;  1JJ2 F;  1W3E X;  2ZAU A;  2ZF8 A;  4R40 B;  3QHD A;  1W5E A;  3M1X A;  4O2A A;  2UYN B;  3NK7 A;  4BT7 A;  2PHN A;  1TUB B;  1GO1 A;  2Z1E A;  3ZO8 A;  1YIT F;  3WJR A;  5IJ0 B;  1CLI A;  2FC3 A;  3CCU F;  5GIO C;  5GON A;  2L26 A;  2VAW A;  3HKB A;  4TV8 A;  1IV4 A;  3CCR F;  2HRU A;  1N8R H;  4ZHQ A;  4X1Y A;  5LYJ A;  2UYJ A;  2LBX A;  3JAK B;  4G4W A;  3K0T A;  3OON A;  3LWO C;  3JAT A;  3S0W A;  5LOV A;  5LP6 A;  4EB6 B;  3HKC A;  1U3L A;  1VQ7 F;  3RYH B;  1VQL F;  3WGJ A;  1YQN A;  3O85 A;  3SIU A;  4O2B A;  3C8L A;  5G4U C;  2IAF A;  1VQO F;  3FBA A;  2OTJ F;  2NMU A;  1VQ6 F;  1NMU B;  3EOR A;  1KD1 H;  1SZQ A;  3J81 M;  3VYT C;  3N4Y A;  3T80 A;  1VHA A;  3FD5 A;  2HQS C;  3MBM A;  4FFB A;  5EIB C;  5HY2 A;  3TD4 A;  4I55 A;  4WBN B;  4C4W C;  4O4I B;  4BT5 A;  5EO3 A;  4X1K B;  4BT2 A;  3E22 B;  1FFX A;  5CA1 A;  3HTN A;  5IT9 M;  1RLU A;  4O2A B;  2KGW A;  4KWE A;  2BO1 A;  4G4V A;  2HP0 B;  1NJI H;  4ZOL A;  5GON B;  1SDS A;  5EB1 B;  4TV8 B;  3K12 A;  4ZHQ B;  4X1Y B;  3CMA F;  5LYJ B;  1VQ5 F;  2F9Z C;  5LA6 A;  3LDT A;  4NUT A;  3P4E A;  5JVD A;  3SIV A;  3JAT B;  5LOV B;  3L7Q A;  5LP6 B;  3E1Y A;  3HKC B;  1YJN F;  1IV1 A;  2OTL F;  4I50 B;  3B6N A;  4PWT A;  2IQQ A;  4BW0 B;  1GO0 A;  3OW2 F;  5ITZ B;  3G4S F;  2N48 A;  3WJP A;  5HP7 A;  2W8B C;  2QI2 A;  3CXC F;  4X3M A;  1W42 A;  3GHZ A;  3GYQ A;  4FFB B;  3CD6 F;  3ELC A;  5EIB D;  1RLG A;  4DRX A;  1K8A H;  5GIN C;  3LWQ C;  3KHN A;  3P10 A;  3I7T A;  1XV2 A;  3FFM A;  3NK6 A;  3C9U A;  3I55 F;  3F0D A;  1FFX B;  4LNU A;  4BVS A;  5CA1 B;  3D54 A;  3IKF A;  2OTM A;  3CB2 A;  1VQ9 F;  2CZW A;  2HVY D;  4RQO A;  3MCA B;  1IPA A;  1YHQ F;  1VH8 A;  4ZHV A;  4F6R B;  1W5F A;  1QD9 A;  1UFY A;  4BT3 A;  2Z01 A;  1H47 A;  1XBI A;  3V3T A;  2CSL A;  1UI9 A;  4G4X A;  3VYU C;  2VXY A;  4ERH A;  4ZK7 A;  2LCA A;  3CCL F;  2HS3 A;  3CCM F;  5EZY A;  3ESJ A;  3M84 A;  3G6E F;  3R0P A;  3OBY A;  3J80 M;  2HS4 A;  5LA6 B;  2MQE A;  5EAZ A;  5JVD B;  5KMG B;  3V7Q A;  1W5A A;  3LME A;  2LBT A;  1XRG A;  3IEW A;  4O4L A;  2BTO A;  3KJK A;  2H8E A;  2QEX F;  3G71 F;  2UYK A;  2GLZ A;  3PLA C;  2CHT A;  3JAS A;  2QTP A;  2ZVZ A;  5FNV A;  1K73 H;  5KX5 B;  3JAM M;  5EB0 A;  3WJQ A;  3WGL A;  3DDN A;  4BVR A;  1ZWZ A;  2HRY A;  5EYP B;  1XHO A;  5C8Y A;  3CPQ A;  3WGM A;  2WAL A;  3RYI B;  3D01 A;  4DRX B;  4EI7 A;  3LFO A;  1VQ4 F;  1SA0 A;  3F0F A;  4U39 A;  2ZOV A;  4LNU B;  5CB4 B;  3JAR A;  1KNK A;  2CWJ A;  3S0H A;  3JAW A;  4TZZ A;  1W41 A;  2FGY A;  3C9S A;  1GZ0 A;  4E6E A;  3HAX D;  1QU9 A;  1T0K B;  1E7K A;  5JQG A;  3JCM M;  1T0A A;  2RHH A;  1Z5V A;  3K2X A;  1J7H A;  3N4Z A;  2KG4 A;  5B8F A;  5EZY B;  1X25 A;  3M4S A;  3HKB B;  5CA0 A;  4BT6 A;  1Q8R A;  4BT4 A;  4BVQ A;  5MN5 A;  1U40 A;  3OBW A;  3IKE A;  2HS0 A;  3WGN A;  4B62 A;  4O4L B;  4NQ3 A;  3RYC A;  1IV3 A;  2G9I A;  3DC2 A;  1VQM F;  2I6R A;  3S03 A;  2B33 A;  2KTV A;  4U3J A;  1W59 A;  1TVK A;  3JAS B;  5MN6 A;  2Z1U A;  1TUB A;  1JN1 A;  5FNV B;  3VYS C;  2KTU A;  2P6Y A;  1KQS F;  4O2B B;  5C8Y B;  3WXM B;  5IJ9 A;  3KIZ A;  3PAF A;  3V4D A;  5FLX M;  4RHA A;  4ZHW A;  4G88 A;  1OFU A;  3RA5 A;  1KC8 H;  2R6R 1;  2RHO A;  3RA6 A; 
#chains in the Genus database with same CATH homology
 2PHN A;  2G9I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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