2PHNA

Crystal structure of an amide bond forming f420-gamma glutamyl ligase from archaeoglobus fulgidus
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
248
structure length
248
Chain Sequence
RVEVFPVEGLPLIKEGDDLAELISSRVRFEDGDVLVVCSTVISKAEGRIRRLEEFNPSERAKEIAARIGKPAEFVQAVLEESEEVLLDFPFLLVKAKFGNVCVNAGIDASNVEEGSLLLPPLDPDGSAEKLRRRILELTGKRVGVIITDTNGRCFRRGVVGFAIGISGVKAMKDWIGRKDLYGRELEVTVECVADEIAAFANLLMGEGGDGIPAVVVRGLNVAGEGSMEEIYRSEEEDVIRRCLKRCL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of an Amide Bond Forming F(420):gammagamma-glutamyl Ligase from Archaeoglobus Fulgidus - A Member of a New Family of Non-ribosomal Peptide Synthases.
pubmed doi rcsb
source organism Archaeoglobus fulgidus dsm 4304
molecule tags Ligase
molecule keywords F420-0:gamma-glutamyl ligase
total genus 70
structure length 248
sequence length 248
chains with identical sequence B
ec nomenclature ec 6.3.2.31: Coenzyme F420-0:L-glutamate ligase.
pdb deposition date 2007-04-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01996 F420_ligase F420-0:Gamma-glutamyl ligase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1330.100 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A; CofE-like 2phnA01
3.90.1660.10 Alpha Beta Alpha-Beta Complex CofE-like fold CofE-like domain 2phnA02
2G9IA 2PHNA
chains in the Genus database with same CATH superfamily
3ELCA 4KWEA 4F6RA 3HAXD 5EIBC 2UYNB 2Z1FA 3JVHA 5HY0A 2OTLF 2HVYD 4X20A 3GTZA 3IKFA 4ZI7B 5LOVB 3OW2F 4LNUA 3AGKA 2HX0A 2CWJA 3NK6A 4X1YB 2WALA 3HKBA 5CB4B 5EB0A 3C9TA 5JCOA 5MN5A 4O4JA 5EAZA 1W581 5MN4A 1YJ9F 1TUBB 2CHTA 2VXYA 5HWEA 1GZ0A 2K1SA 3PLAC 4E6EA 2HS0A 3L7QA 3CCQF 1NJIH 3CCUF 2HQSC 1U40A 2I6DA 3D54A 1VH8A 1VQKF 4NWOB 4U3JA 1T0AA 3P4EA 1U43A 3JCMM 3S06A 4X1IB 1JJ2F 3V3TA 5LYJB 3KE1A 3LDTA 5J2TA 2LBWA 4TUYB 5ITZB 3LFOA 2ZODA 5HP7A 1QAHA 3HKCA 3VYSC 3KJJA 1XBIA 1DT9A 1PF5A 4TV8A 5BMVB 1VQ9F 3NK7A 3CPQA 3G4SF 3CCJF 2G9IA 4O2BA 3M84A 3KIZA 3NVIB 3QUWA 1JFFA 4YJ3B 5C8YA 1X52A 2EWCA 4BT2A 4EI9A 3CC2F 4X1KA 4B46A 4X3LA 3KJKA 3RYHB 1SDSA 3JAKB 3CYQA 4B62A 2P6YA 2ZF8A 4ZHWA 1Q86H 5G4VC 4TUYA 5ITZA 4IIJB 4X1IA 2IQQA 1RLGA 3RYIB 3ZP4A 2BO1A 3CC4F 3TD4A 2VAMA 4ZOLB 4U39A 1TVKB 3S03A 2LBTA 2BTUA 3HKCB 3E22A 3JARB 3R0PA 4C81A 3GHZA 3CD6F 1FFXB 3HKDA 1VQPF 3C9UA 1ODEA 5IJ9B 2L26A 4BVTA 5FLXM 4I55B 5EYPB 3FFMA 1VQLF 5C8YB 1OFUA 1JN1A 4O2AB 4HNAB 3BYQA 3HWUA 4O4IA 2ZAUA 3JAKA 4C4WC 3JASA 2GLZA 2LBXA 4BVSA 2HP0A 4NQ3A 2Q1YA 5FNVA 3VOAA 3WGLA 3TD5A 3S02A 3SIVA 5IYZA 1Z5VA 1RA4A 2Q1XA 2KTVA 1YI2F 2H6LA 4FFBB 3VIUA 5IJ9A 4O4JB 5KX5A 4ZOLA 3GYQA 5JH7B 3CCMF 2AMTA 1VQMF 5EYPA 3N4YA 3E22B 3JARA 5LOVA 5CA1B 1KC8H 1YJWF 3C9SA 4WBNB 3HKDB 4LNUB 2Z1UA 3G6EF 5EB1B 3P10A 3J7AR 1CN7A 3LWQC 3I56F 1R1MA 5FNVB 1X25A 1M1KH 3CCRF 3RYFB 2KG4A 1E7KA 4O2AA 2ZVZA 1SA0A 2GZLA 2NMUA 3CCEF 2I6RA 3LMEA 2BTQB 3S0HA 3IMPA 2R751 3ON1A 2UYNA 1RQ2A 1CLIA 2YXZA 3IEWA 3K2XA 3Q8HA 4I50A 1W40A 4TV8B 2H8EA 5BMVA 3IR9A 3B6NA 4O4HA 4BT7A 3MCAB 1Z5WA 2BTOA 5GONA 1NMUB 1YITF 3CYPB 5J2TB 1QVFF 3HKEB 1VQNF 2VAPA 3S0WA 3N2GA 5GIOC 3RYFA 4BT4A 4M8IA 1VQOF 5J2UB 1Q8RA 2F9ZC 5KMGA 3N2KB 3OBWA 5MN6A 3JALA 2CZWA 1OAPA 4G88A 5JQGB 3VYTC 1H7MA 3IKEA 3LWRC 3UT5A 5EWRA 2VAWA 1QD9A 3F6MA 3F0EA 4O4HB 3E20B 3RYCB 2N48A 5CB4A 5LP6B 4RQOA 3CB2A 1SZQA 4ZHVA 3C8LA 3JATB 3CPWF 5GONB 2OTJF 1U3PA 5DCVA 4O4LB 4G4ZA 5IJ0A 1IV2A 2VGNA 5EZYA 3HKEA 1T0KB 2AIFA 2HP0B 2FGYA 3QTYA 3F0DA 2HS4A 2UZHA 3FD6A 5JCOC 4ZI7A 1RQ7A 4I55A 1TUBA 4TV9B 1KQSF 5A2QM 3N2KA 3F0GA 3RE3A 4X1YA 1VK3A 3K12A 3FPIA 1KNKA 3NVKE 3FD5A 5JQGA 5JVDA 2QI2A 3JATA 3WJPA 3WPWA 1IV1A 3NMUC 1YQNA 4RHAA 3WGKA 5EZYB 1JY8A 1J7HA 3O85A 5LXTA 1S72F 1W5AA 2RHLA 3HKBB 3WJRA 1ONIA 5LA6A 2RHOA 1XHOA 3I7TA 1KD1H 1VQ6F 4C8IA 5JH7A 1Q82H 3RA5A 4YJ3A 1W59A 1GX1A 2RHJA 1Q7YH 3PAFA 4C8EA 1GO1A 2W8BC 1W3EX 4X3MA 4WBNA 1K8AH 3WGJA 3DDNA 2RB9A 4IHJB 1H48A 2PHNA 5GINC 4BY9D 3WGMA 5GAPK 2HS3A 3HTNA 3OONA 2OTMA 3S0YA 3N4ZA 3V7QA 3VCZA 4X1KB 5JVDB 5EIBD 3ESJA 1W5BA 4BT6A 4XCQA 1N8RH 1XRGA 5EO3A 1CK2A 4EI7A 3OBYA 3CXCF 5AVMA 3MQWA 3VOBA 3DC2A 1DBFA 3F0FA 3VO8A 1XV2A 1YHQF 2ALEA 4BVQA 2GVIA 1GO0A 1UI9A 2FC3A 4HNAA 4DXDA 5GIPC 3JASB 1SA0B 4IHJA 4X20B 2R6R1 1W5FA 4PWTA 1W55A 4ZHQB 5CA0B 1W41A 2QA4F 1TVKA 4G4YA 1COMA 3M4SA 3WXMB 3D01A 5GANK 2QEXF 2IG8A 2VGMA 4DRXA 2OZBA 2UYJA 3WGNA 3QHDA 1IPAA 2JNBA 2KTUA 4ZHYB 4I4TB 3CC7F 3CCLF 3IEQA 3FBAA 1VQ7F 1YJNF 3ZOPA 3LWPC 4B45A 3HJWC 2RHHA 5CA1A 2LCAA 2HRUA 1K73H 1VQ5F 4BT5A 3V4DA 5HY1A 3ZO8A 1W42A 4ZHQA 5G4UC 3MCQA 2Z1EA 4O2BB 2MQEA 5KX5B 4ERHA 2ZVYA 1YIJF 5LP6A 1QU9A 4BW0B 4TV9A 1UFYA 3ZP7A 4EB6B 3JAMM 3V7EA 4YJ2A 5HXZA 3J80M 3SIUA 2OHWA 5J2UA 1JD1A 4O4IB 3WJQA 3LYBA 3LWOC 1FNKA 5IT9M 3P0ZA 4I4TA 2AIZP 5CA0A 4TZZA 2UYKA 2CW4A 3D00A 3JALB 2B33A 1ZWZA 4NUTA 4ZK7A 1PXWA 4C82A 4DRXB 1K9MH 4G4WA 1VQ4F 1FNJA 3CCVF 5HP8A 5LA6B 1IV3A 2DT4A 4G4XA 3RYCA 3MDOA 4BVRA 1H47A 5LYJA 4EB6A 5HXUA 1M90H 2HRYA 3TD3A 3JAWA 2CHSA 1VHAA 4EI8A 3T80A 4R40B 3CMEF 1X7OA 1Q81H 3CMAF 4YJ2B 1FSZA 3RYIA 3WPXA 5FJ4C 4I50B 3E1YA 5KMGB 2PMPA 1JFFB 1QVGF 4F6RB 3VI6A 5B8FA 3K0TA 1W2BF 3N2GB 3RA6A 5IYZB 5HY2A 3C9RA 3RYHA 2V9YA 2KGWA 4BT3A 3EORA 3CCSF 3K14A 3J81M 1X7PA 4B5CA 1VQ8F 3M1XA 3CG6A 1KNJA 1U3LA 4IIJA 3JAWB 1RLUA 4LCKA 1IV4A 3VYUC 5LXTB 1W57A 3MBMA 2YYEA 5IJ0B 1NQ3A 3VMFB 3ERNA 2IAFA 1W5EA 2CVLA 3UT5B 3I3FA 3KHNA 3I55F 2ZOVA 2Z1TA 3LWVC 2H8CA 1YGYA 4G4VA 5HY4A 3VTIC 2UYPA 2Z01A 2QTPA 4C8GA 1FFXA 3U0OA 4U3JB 5LP6C 2CSLA 2DYYA 3G71F 1VQVA 2HP3A 4O4LA 4FFBA
chains in the Genus database with same CATH topology
2G9IA 2PHNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2G9I A;  2PHN A; 
#chains in the Genus database with same CATH topology
 3ELC A;  4KWE A;  4F6R A;  3HAX D;  5EIB C;  2UYN B;  2Z1F A;  3JVH A;  5HY0 A;  2OTL F;  2HVY D;  4X20 A;  3GTZ A;  3IKF A;  4ZI7 B;  5LOV B;  3OW2 F;  4LNU A;  3AGK A;  2HX0 A;  2CWJ A;  3NK6 A;  4X1Y B;  2WAL A;  3HKB A;  5CB4 B;  5EB0 A;  3C9T A;  5JCO A;  5MN5 A;  4O4J A;  5EAZ A;  1W58 1;  5MN4 A;  1YJ9 F;  1TUB B;  2CHT A;  2VXY A;  5HWE A;  1GZ0 A;  2K1S A;  3PLA C;  4E6E A;  2HS0 A;  3L7Q A;  3CCQ F;  1NJI H;  3CCU F;  2HQS C;  1U40 A;  2I6D A;  3D54 A;  1VH8 A;  1VQK F;  4NWO B;  4U3J A;  1T0A A;  3P4E A;  1U43 A;  3JCM M;  3S06 A;  4X1I B;  1JJ2 F;  3V3T A;  5LYJ B;  3KE1 A;  3LDT A;  5J2T A;  2LBW A;  4TUY B;  5ITZ B;  3LFO A;  2ZOD A;  5HP7 A;  1QAH A;  3HKC A;  3VYS C;  3KJJ A;  1XBI A;  1DT9 A;  1PF5 A;  4TV8 A;  5BMV B;  1VQ9 F;  3NK7 A;  3CPQ A;  3G4S F;  3CCJ F;  2G9I A;  4O2B A;  3M84 A;  3KIZ A;  3NVI B;  3QUW A;  1JFF A;  4YJ3 B;  5C8Y A;  1X52 A;  2EWC A;  4BT2 A;  4EI9 A;  3CC2 F;  4X1K A;  4B46 A;  4X3L A;  3KJK A;  3RYH B;  1SDS A;  3JAK B;  3CYQ A;  4B62 A;  2P6Y A;  2ZF8 A;  4ZHW A;  1Q86 H;  5G4V C;  4TUY A;  5ITZ A;  4IIJ B;  4X1I A;  2IQQ A;  1RLG A;  3RYI B;  3ZP4 A;  2BO1 A;  3CC4 F;  3TD4 A;  2VAM A;  4ZOL B;  4U39 A;  1TVK B;  3S03 A;  2LBT A;  2BTU A;  3HKC B;  3E22 A;  3JAR B;  3R0P A;  4C81 A;  3GHZ A;  3CD6 F;  1FFX B;  3HKD A;  1VQP F;  3C9U A;  1ODE A;  5IJ9 B;  2L26 A;  4BVT A;  5FLX M;  4I55 B;  5EYP B;  3FFM A;  1VQL F;  5C8Y B;  1OFU A;  1JN1 A;  4O2A B;  4HNA B;  3BYQ A;  3HWU A;  4O4I A;  2ZAU A;  3JAK A;  4C4W C;  3JAS A;  2GLZ A;  2LBX A;  4BVS A;  2HP0 A;  4NQ3 A;  2Q1Y A;  5FNV A;  3VOA A;  3WGL A;  3TD5 A;  3S02 A;  3SIV A;  5IYZ A;  1Z5V A;  1RA4 A;  2Q1X A;  2KTV A;  1YI2 F;  2H6L A;  4FFB B;  3VIU A;  5IJ9 A;  4O4J B;  5KX5 A;  4ZOL A;  3GYQ A;  5JH7 B;  3CCM F;  2AMT A;  1VQM F;  5EYP A;  3N4Y A;  3E22 B;  3JAR A;  5LOV A;  5CA1 B;  1KC8 H;  1YJW F;  3C9S A;  4WBN B;  3HKD B;  4LNU B;  2Z1U A;  3G6E F;  5EB1 B;  3P10 A;  3J7A R;  1CN7 A;  3LWQ C;  3I56 F;  1R1M A;  5FNV B;  1X25 A;  1M1K H;  3CCR F;  3RYF B;  2KG4 A;  1E7K A;  4O2A A;  2ZVZ A;  1SA0 A;  2GZL A;  2NMU A;  3CCE F;  2I6R A;  3LME A;  2BTQ B;  3S0H A;  3IMP A;  2R75 1;  3ON1 A;  2UYN A;  1RQ2 A;  1CLI A;  2YXZ A;  3IEW A;  3K2X A;  3Q8H A;  4I50 A;  1W40 A;  4TV8 B;  2H8E A;  5BMV A;  3IR9 A;  3B6N A;  4O4H A;  4BT7 A;  3MCA B;  1Z5W A;  2BTO A;  5GON A;  1NMU B;  1YIT F;  3CYP B;  5J2T B;  1QVF F;  3HKE B;  1VQN F;  2VAP A;  3S0W A;  3N2G A;  5GIO C;  3RYF A;  4BT4 A;  4M8I A;  1VQO F;  5J2U B;  1Q8R A;  2F9Z C;  5KMG A;  3N2K B;  3OBW A;  5MN6 A;  3JAL A;  2CZW A;  1OAP A;  4G88 A;  5JQG B;  3VYT C;  1H7M A;  3IKE A;  3LWR C;  3UT5 A;  5EWR A;  2VAW A;  1QD9 A;  3F6M A;  3F0E A;  4O4H B;  3E20 B;  3RYC B;  2N48 A;  5CB4 A;  5LP6 B;  4RQO A;  3CB2 A;  1SZQ A;  4ZHV A;  3C8L A;  3JAT B;  3CPW F;  5GON B;  2OTJ F;  1U3P A;  5DCV A;  4O4L B;  4G4Z A;  5IJ0 A;  1IV2 A;  2VGN A;  5EZY A;  3HKE A;  1T0K B;  2AIF A;  2HP0 B;  2FGY A;  3QTY A;  3F0D A;  2HS4 A;  2UZH A;  3FD6 A;  5JCO C;  4ZI7 A;  1RQ7 A;  4I55 A;  1TUB A;  4TV9 B;  1KQS F;  5A2Q M;  3N2K A;  3F0G A;  3RE3 A;  4X1Y A;  1VK3 A;  3K12 A;  3FPI A;  1KNK A;  3NVK E;  3FD5 A;  5JQG A;  5JVD A;  2QI2 A;  3JAT A;  3WJP A;  3WPW A;  1IV1 A;  3NMU C;  1YQN A;  4RHA A;  3WGK A;  5EZY B;  1JY8 A;  1J7H A;  3O85 A;  5LXT A;  1S72 F;  1W5A A;  2RHL A;  3HKB B;  3WJR A;  1ONI A;  5LA6 A;  2RHO A;  1XHO A;  3I7T A;  1KD1 H;  1VQ6 F;  4C8I A;  5JH7 A;  1Q82 H;  3RA5 A;  4YJ3 A;  1W59 A;  1GX1 A;  2RHJ A;  1Q7Y H;  3PAF A;  4C8E A;  1GO1 A;  2W8B C;  1W3E X;  4X3M A;  4WBN A;  1K8A H;  3WGJ A;  3DDN A;  2RB9 A;  4IHJ B;  1H48 A;  2PHN A;  5GIN C;  4BY9 D;  3WGM A;  5GAP K;  2HS3 A;  3HTN A;  3OON A;  2OTM A;  3S0Y A;  3N4Z A;  3V7Q A;  3VCZ A;  4X1K B;  5JVD B;  5EIB D;  3ESJ A;  1W5B A;  4BT6 A;  4XCQ A;  1N8R H;  1XRG A;  5EO3 A;  1CK2 A;  4EI7 A;  3OBY A;  3CXC F;  5AVM A;  3MQW A;  3VOB A;  3DC2 A;  1DBF A;  3F0F A;  3VO8 A;  1XV2 A;  1YHQ F;  2ALE A;  4BVQ A;  2GVI A;  1GO0 A;  1UI9 A;  2FC3 A;  4HNA A;  4DXD A;  5GIP C;  3JAS B;  1SA0 B;  4IHJ A;  4X20 B;  2R6R 1;  1W5F A;  4PWT A;  1W55 A;  4ZHQ B;  5CA0 B;  1W41 A;  2QA4 F;  1TVK A;  4G4Y A;  1COM A;  3M4S A;  3WXM B;  3D01 A;  5GAN K;  2QEX F;  2IG8 A;  2VGM A;  4DRX A;  2OZB A;  2UYJ A;  3WGN A;  3QHD A;  1IPA A;  2JNB A;  2KTU A;  4ZHY B;  4I4T B;  3CC7 F;  3CCL F;  3IEQ A;  3FBA A;  1VQ7 F;  1YJN F;  3ZOP A;  3LWP C;  4B45 A;  3HJW C;  2RHH A;  5CA1 A;  2LCA A;  2HRU A;  1K73 H;  1VQ5 F;  4BT5 A;  3V4D A;  5HY1 A;  3ZO8 A;  1W42 A;  4ZHQ A;  5G4U C;  3MCQ A;  2Z1E A;  4O2B B;  2MQE A;  5KX5 B;  4ERH A;  2ZVY A;  1YIJ F;  5LP6 A;  1QU9 A;  4BW0 B;  4TV9 A;  1UFY A;  3ZP7 A;  4EB6 B;  3JAM M;  3V7E A;  4YJ2 A;  5HXZ A;  3J80 M;  3SIU A;  2OHW A;  5J2U A;  1JD1 A;  4O4I B;  3WJQ A;  3LYB A;  3LWO C;  1FNK A;  5IT9 M;  3P0Z A;  4I4T A;  2AIZ P;  5CA0 A;  4TZZ A;  2UYK A;  2CW4 A;  3D00 A;  3JAL B;  2B33 A;  1ZWZ A;  4NUT A;  4ZK7 A;  1PXW A;  4C82 A;  4DRX B;  1K9M H;  4G4W A;  1VQ4 F;  1FNJ A;  3CCV F;  5HP8 A;  5LA6 B;  1IV3 A;  2DT4 A;  4G4X A;  3RYC A;  3MDO A;  4BVR A;  1H47 A;  5LYJ A;  4EB6 A;  5HXU A;  1M90 H;  2HRY A;  3TD3 A;  3JAW A;  2CHS A;  1VHA A;  4EI8 A;  3T80 A;  4R40 B;  3CME F;  1X7O A;  1Q81 H;  3CMA F;  4YJ2 B;  1FSZ A;  3RYI A;  3WPX A;  5FJ4 C;  4I50 B;  3E1Y A;  5KMG B;  2PMP A;  1JFF B;  1QVG F;  4F6R B;  3VI6 A;  5B8F A;  3K0T A;  1W2B F;  3N2G B;  3RA6 A;  5IYZ B;  5HY2 A;  3C9R A;  3RYH A;  2V9Y A;  2KGW A;  4BT3 A;  3EOR A;  3CCS F;  3K14 A;  3J81 M;  1X7P A;  4B5C A;  1VQ8 F;  3M1X A;  3CG6 A;  1KNJ A;  1U3L A;  4IIJ A;  3JAW B;  1RLU A;  4LCK A;  1IV4 A;  3VYU C;  5LXT B;  1W57 A;  3MBM A;  2YYE A;  5IJ0 B;  1NQ3 A;  3VMF B;  3ERN A;  2IAF A;  1W5E A;  2CVL A;  3UT5 B;  3I3F A;  3KHN A;  3I55 F;  2ZOV A;  2Z1T A;  3LWV C;  2H8C A;  1YGY A;  4G4V A;  5HY4 A;  3VTI C;  2UYP A;  2Z01 A;  2QTP A;  4C8G A;  1FFX A;  3U0O A;  4U3J B;  5LP6 C;  2CSL A;  2DYY A;  3G71 F;  1VQV A;  2HP3 A;  4O4L A;  4FFB A; 
#chains in the Genus database with same CATH homology
 2G9I A;  2PHN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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