2PIEA

Crystal structure of the fha domain of rnf8 in complex with its optimal phosphopeptide
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
132
structure length
132
Chain Sequence
GAHMAGGRSWCLRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVTEEDWETIYPCLSPKN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligase
molecule keywords E3 ubiquitin-protein ligase RNF8
publication title RNF8 Transduces the DNA-Damage Signal via Histone Ubiquitylation and Checkpoint Protein Assembly.
pubmed doi rcsb
source organism Homo sapiens
total genus 32
structure length 132
sequence length 132
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2007-04-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00498 FHA FHA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.200.20 Mainly Beta Sandwich Tumour Suppressor Smad4 Tumour Suppressor Smad4 2pieA01
1WV3A 3UNMA 2LC1A 3UOTA 1UHTA 4A0EA 2JQIA 1QU5A 1G6GA 3UN0A 1K2MA 2KKLA 1K3QA 2JPEA 1K3NA 3VA1A 3I6UA 1K3JA 1LGPA 4JONA 2KB3A 1LGQA 3UMZA 4QCJA 1J4PA 4G2SA 2XT9B 1GXCA 1G3GA 1MZKA 1J4OA 3PO8A 2CSWA 1YJMA 3I0NA 3HUEA 1J4LA 2W3OA 4EGXA 3KT9A 3UNNA 3POAA 3OUNA 5DJOA 3I0MA 4H87A 1J4QA 2A0TA 2JQLA 3ELVA 2FF4A 2KFUA 3HX1A 3GQSA 1YJ5C 5E50A 1UJXA 1WLNA 2KB4A 1K2NA 3HUFA 2BRFA 2EH0A 2FEZA 3FM8A 3VPYA 3UV0A 2AFFA 4EJQA 2PIEA 2G1LA 3I6WA 1J4KA 3ELSA 1FHQA 2JQJA 4D9VA 1FHRA 3MDBA 1DMZA 1R21A 3VA4A 2JKDA 5A8IA
chains in the Genus database with same CATH superfamily
1YT5A 1U0TA 5EJHA 3V7YA 1WV3A 5EJFA 3UNMA 1G88A 2LC1A 1UHTA 2JQIA 3UOTA 1QU5A 4A0EA 3S40A 1G6GA 3UN0A 4L02A 2Q5FA 5EJGA 5C4VA 2KKLA 1K2MA 1K3QA 3A77A 1U0RA 5JELA 3DITA 1U7VA 3V7UA 2JPEA 5DHRA 1K3NA 3VA1A 3T5PA 3I6UA 1QWTA 5DHTA 1K3JA 3V8PA 1LGPA 1YGSA 2I2DA 4JONA 2KB3A 5DHQA 1LGQA 4WRRA 3UMZA 4QCJA 1J4PA 4G2SA 5EJIA 2XT9B 1GXCA 2I2FA 1G3GA 1KHUA 1U7VB 1MZKA 1J4OA 5JEJA 3PO8A 5JEKA 3V8MA 1U7FA 1MR1A 2CSWA 3V7WA 4R9PA 1Z0ZA 1YJMA 3I0NA 3HUEA 2I2CA 1J4LA 4JIVD 5DHPA 4A4YA 2W3OA 2I29A 4EGXA 3KT9A 1DD1A 2QVLA 4JIWD 3UNNA 3AFOA 3POAA 3OUNA 5DJOA 3I0MA 3V8RA 1MK2A 1Z0UA 4H87A 2P1RA 1J4QA 1DEVA 4V24A 1U7FB 2A0TA 4KU0D 2JQLA 1SUWA 4HAOA 1J2FA 3DSHA 3ELVA 2XXSA 2FF4A 2KFUA 3HX1A 3GQSA 3V80A 1KHXA 1YJ5C 1Y3IA 2QV7A 5E50A 4WERA 5BVIA 1UJXA 1WLNA 2KB4A 3VZCA 1K2NA 2BRFA 3HUFA 2EH0A 3V8NA 4DY6A 1ZOQA 2FEZA 3FM8A 3VZDA 3VPYA 3UV0A 2AFFA 3V8QA 4EJQA 3PFNA 2PIEA 2G1LA 5DHSA 3I6WA 1J4KA 3ELSA 1Z0SA 2I1WA 2JQJA 1FHQA 4D9VA 5JEOA 2JGRA 5DHUA 1FHRA 5JERA 3MDBA 5JEMA 1DMZA 3GMJA 1MJSA 1R21A 2I2BA 1Y3HA 2AN1A 3VA4A 2I2AA 2JKDA 5A8IA 2BONA 3VZBA
chains in the Genus database with same CATH topology
1WV3A 3UNMA 1G88A 2LC1A 1UHTA 2JQIA 3UOTA 1QU5A 4A0EA 3S40A 1G6GA 3UN0A 4L02A 5C4VA 1K2MA 2KKLA 1K3QA 3A77A 5JELA 3DITA 1U7VA 2JPEA 1K3NA 3VA1A 3T5PA 3I6UA 1QWTA 1K3JA 1LGPA 1YGSA 4JONA 2KB3A 1LGQA 4WRRA 3UMZA 4QCJA 1J4PA 4G2SA 2XT9B 1GXCA 1G3GA 1KHUA 1U7VB 1MZKA 1J4OA 5JEJA 3PO8A 5JEKA 1U7FA 1MR1A 2CSWA 4R9PA 1YJMA 3I0NA 3HUEA 1J4LA 4JIVD 4A4YA 2W3OA 4EGXA 3KT9A 1DD1A 2QVLA 4JIWD 3UNNA 3POAA 3OUNA 5DJOA 3I0MA 1MK2A 4H87A 2P1RA 1J4QA 1DEVA 4V24A 1U7FB 2A0TA 4KU0D 2JQLA 1J2FA 3DSHA 3ELVA 2XXSA 2FF4A 2KFUA 3HX1A 3GQSA 1KHXA 1YJ5C 2QV7A 5E50A 4WERA 5BVIA 1UJXA 1WLNA 2KB4A 3VZCA 1K2NA 3HUFA 2BRFA 2EH0A 1ZOQA 2FEZA 3FM8A 3VZDA 3VPYA 3UV0A 2AFFA 4EJQA 2PIEA 2G1LA 3I6WA 1J4KA 3ELSA 1FHQA 2JQJA 4D9VA 5JEOA 2JGRA 1FHRA 5JERA 3MDBA 5JEMA 1DMZA 3GMJA 1MJSA 1R21A 3VA4A 2JKDA 5A8IA 2BONA 3VZBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WV3 A;  3UNM A;  2LC1 A;  3UOT A;  1UHT A;  4A0E A;  2JQI A;  1QU5 A;  1G6G A;  3UN0 A;  1K2M A;  2KKL A;  1K3Q A;  2JPE A;  1K3N A;  3VA1 A;  3I6U A;  1K3J A;  1LGP A;  4JON A;  2KB3 A;  1LGQ A;  3UMZ A;  4QCJ A;  1J4P A;  4G2S A;  2XT9 B;  1GXC A;  1G3G A;  1MZK A;  1J4O A;  3PO8 A;  2CSW A;  1YJM A;  3I0N A;  3HUE A;  1J4L A;  2W3O A;  4EGX A;  3KT9 A;  3UNN A;  3POA A;  3OUN A;  5DJO A;  3I0M A;  4H87 A;  1J4Q A;  2A0T A;  2JQL A;  3ELV A;  2FF4 A;  2KFU A;  3HX1 A;  3GQS A;  1YJ5 C;  5E50 A;  1UJX A;  1WLN A;  2KB4 A;  1K2N A;  3HUF A;  2BRF A;  2EH0 A;  2FEZ A;  3FM8 A;  3VPY A;  3UV0 A;  2AFF A;  4EJQ A;  2PIE A;  2G1L A;  3I6W A;  1J4K A;  3ELS A;  1FHQ A;  2JQJ A;  4D9V A;  1FHR A;  3MDB A;  1DMZ A;  1R21 A;  3VA4 A;  2JKD A;  5A8I A; 
#chains in the Genus database with same CATH topology
 1YT5 A;  1U0T A;  5EJH A;  3V7Y A;  1WV3 A;  5EJF A;  3UNM A;  1G88 A;  2LC1 A;  1UHT A;  2JQI A;  3UOT A;  1QU5 A;  4A0E A;  3S40 A;  1G6G A;  3UN0 A;  4L02 A;  2Q5F A;  5EJG A;  5C4V A;  2KKL A;  1K2M A;  1K3Q A;  3A77 A;  1U0R A;  5JEL A;  3DIT A;  1U7V A;  3V7U A;  2JPE A;  5DHR A;  1K3N A;  3VA1 A;  3T5P A;  3I6U A;  1QWT A;  5DHT A;  1K3J A;  3V8P A;  1LGP A;  1YGS A;  2I2D A;  4JON A;  2KB3 A;  5DHQ A;  1LGQ A;  4WRR A;  3UMZ A;  4QCJ A;  1J4P A;  4G2S A;  5EJI A;  2XT9 B;  1GXC A;  2I2F A;  1G3G A;  1KHU A;  1U7V B;  1MZK A;  1J4O A;  5JEJ A;  3PO8 A;  5JEK A;  3V8M A;  1U7F A;  1MR1 A;  2CSW A;  3V7W A;  4R9P A;  1Z0Z A;  1YJM A;  3I0N A;  3HUE A;  2I2C A;  1J4L A;  4JIV D;  5DHP A;  4A4Y A;  2W3O A;  2I29 A;  4EGX A;  3KT9 A;  1DD1 A;  2QVL A;  4JIW D;  3UNN A;  3AFO A;  3POA A;  3OUN A;  5DJO A;  3I0M A;  3V8R A;  1MK2 A;  1Z0U A;  4H87 A;  2P1R A;  1J4Q A;  1DEV A;  4V24 A;  1U7F B;  2A0T A;  4KU0 D;  2JQL A;  1SUW A;  4HAO A;  1J2F A;  3DSH A;  3ELV A;  2XXS A;  2FF4 A;  2KFU A;  3HX1 A;  3GQS A;  3V80 A;  1KHX A;  1YJ5 C;  1Y3I A;  2QV7 A;  5E50 A;  4WER A;  5BVI A;  1UJX A;  1WLN A;  2KB4 A;  3VZC A;  1K2N A;  2BRF A;  3HUF A;  2EH0 A;  3V8N A;  4DY6 A;  1ZOQ A;  2FEZ A;  3FM8 A;  3VZD A;  3VPY A;  3UV0 A;  2AFF A;  3V8Q A;  4EJQ A;  3PFN A;  2PIE A;  2G1L A;  5DHS A;  3I6W A;  1J4K A;  3ELS A;  1Z0S A;  2I1W A;  2JQJ A;  1FHQ A;  4D9V A;  5JEO A;  2JGR A;  5DHU A;  1FHR A;  5JER A;  3MDB A;  5JEM A;  1DMZ A;  3GMJ A;  1MJS A;  1R21 A;  2I2B A;  1Y3H A;  2AN1 A;  3VA4 A;  2I2A A;  2JKD A;  5A8I A;  2BON A;  3VZB A; 
#chains in the Genus database with same CATH homology
 1WV3 A;  3UNM A;  1G88 A;  2LC1 A;  1UHT A;  2JQI A;  3UOT A;  1QU5 A;  4A0E A;  3S40 A;  1G6G A;  3UN0 A;  4L02 A;  5C4V A;  1K2M A;  2KKL A;  1K3Q A;  3A77 A;  5JEL A;  3DIT A;  1U7V A;  2JPE A;  1K3N A;  3VA1 A;  3T5P A;  3I6U A;  1QWT A;  1K3J A;  1LGP A;  1YGS A;  4JON A;  2KB3 A;  1LGQ A;  4WRR A;  3UMZ A;  4QCJ A;  1J4P A;  4G2S A;  2XT9 B;  1GXC A;  1G3G A;  1KHU A;  1U7V B;  1MZK A;  1J4O A;  5JEJ A;  3PO8 A;  5JEK A;  1U7F A;  1MR1 A;  2CSW A;  4R9P A;  1YJM A;  3I0N A;  3HUE A;  1J4L A;  4JIV D;  4A4Y A;  2W3O A;  4EGX A;  3KT9 A;  1DD1 A;  2QVL A;  4JIW D;  3UNN A;  3POA A;  3OUN A;  5DJO A;  3I0M A;  1MK2 A;  4H87 A;  2P1R A;  1J4Q A;  1DEV A;  4V24 A;  1U7F B;  2A0T A;  4KU0 D;  2JQL A;  1J2F A;  3DSH A;  3ELV A;  2XXS A;  2FF4 A;  2KFU A;  3HX1 A;  3GQS A;  1KHX A;  1YJ5 C;  2QV7 A;  5E50 A;  4WER A;  5BVI A;  1UJX A;  1WLN A;  2KB4 A;  3VZC A;  1K2N A;  3HUF A;  2BRF A;  2EH0 A;  1ZOQ A;  2FEZ A;  3FM8 A;  3VZD A;  3VPY A;  3UV0 A;  2AFF A;  4EJQ A;  2PIE A;  2G1L A;  3I6W A;  1J4K A;  3ELS A;  1FHQ A;  2JQJ A;  4D9V A;  5JEO A;  2JGR A;  1FHR A;  5JER A;  3MDB A;  5JEM A;  1DMZ A;  3GMJ A;  1MJS A;  1R21 A;  3VA4 A;  2JKD A;  5A8I A;  2BON A;  3VZB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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