2PK0A

Structure of the s. agalactiae serine/threonine phosphatase at 2.65 resolution
Total Genus 75
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
247
structure length
247
Chain Sequence
ARKKYMEISLLTDIGQRRSNNQDFINQFENKAGVPLIILADGMGGHRAGNIASEMTVTDLGSDWAETDFSELSEIRDWMLVSIETENRKIYELGQSDDYKGMGTTIEAVAIVGDNIIFAHVGDSRIGIVRQGEYHLLTSDHSLVNELVKAGQLTEEEAASHPQKNIITQSIGQANPVEPDLGVHLLEEGDYLVVNSDGLTNMLSNADIATVLTQEKTLDDKNQDLITLANHRGGLDNITVALVYVES
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords Serine/threonine protein phosphatase Stp1
publication title Structure of Streptococcus agalactiae serine/threonine phosphatase. The subdomain conformation is coupled to the binding of a third metal ion
pubmed doi rcsb
source organism Streptococcus agalactiae
total genus 75
structure length 247
sequence length 247
chains with identical sequence B, C, D
ec nomenclature ec 3.1.3.16: Protein-serine/threonine phosphatase.
pdb deposition date 2007-04-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13672 PP2C_2 Protein phosphatase 2C
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.40.10 Alpha Beta 4-Layer Sandwich Phosphatase 2c; domain 1 PPM-type phosphatase domain 2pk0A00
3W40A 4YZHA 2J86A 3FXLA 3MQ3A 5JO1B 4WVOB 3W42A 3QN1B 3N3CA 3NMVB 3W41A 3D8KA 3FXKA 4LGAB 2JFSA 5JO2B 3ZVUB 4N0GA 3UJLB 1A6QA 4LA7B 2POPA 3FXOA 4DA1A 2CM1A 2I0OA 5ITIA 2J82A 2XZVA 4LGBB 2IRMA 3UJGB 4RAGA 3T9QA 3T91A 3KB3B 4YZGA 3PU9A 3ZT9A 2Y09A 3KE6A 3NMNB 3FXMA 4LG5B 4JNDA 2JFTA 3JRQA 4DS8B 5D2UA 2I44A 2V06A 3W44A 2PK0A 4RA2A 4RAFA 2IQ1A 3NMTB 2JFRA 2POMA 5F1MA 1TXOA 2P8EA 3W45A 2ISNA 3KDJB 3RT0A 2PNQA 3F79A 2J4OA 4OICB 3ES2A 3W43A 3RNRA 3UJKA 3FXJA 3EQ2A
chains in the Genus database with same CATH superfamily
3W40A 4YZHA 2J86A 3FXLA 3MQ3A 5JO1B 4WVOB 3W42A 3QN1B 3N3CA 3NMVB 3W41A 4IIPA 3D8KA 3FXKA 4LGAB 2JFSA 5JO2B 3ZVUB 4N0GA 3UJLB 1A6QA 4LA7B 2POPA 3FXOA 4DA1A 2CM1A 2I0OA 5ITIA 2J82A 2XZVA 4LGBB 2IRMA 3UJGB 4RAGA 3T9QA 3T91A 3KB3B 4YZGA 3PU9A 3ZT9A 2Y09A 3KE6A 3NMNB 3FXMA 4LG5B 4JNDA 2JFTA 3JRQA 4DS8B 4IIKA 5D2UA 2I44A 2V06A 3W44A 2PK0A 4RA2A 4RAFA 2IQ1A 3NMTB 2JFRA 2POMA 5F1MA 1TXOA 2P8EA 3W45A 2ISNA 3KDJB 3RT0A 2PNQA 3F79A 2J4OA 4OICB 3ES2A 3W43A 3RNRA 3UJKA 3FXJA 3EQ2A
chains in the Genus database with same CATH topology
3W40A 4YZHA 2J86A 3FXLA 3MQ3A 5JO1B 4WVOB 3W42A 3QN1B 3N3CA 3NMVB 3W41A 3D8KA 3FXKA 4LGAB 2JFSA 5JO2B 3ZVUB 4N0GA 3UJLB 1A6QA 4LA7B 2POPA 3FXOA 4DA1A 2CM1A 2I0OA 5ITIA 2J82A 2XZVA 4LGBB 2IRMA 3UJGB 4RAGA 3T9QA 3T91A 3KB3B 4YZGA 3PU9A 3ZT9A 2Y09A 3KE6A 3NMNB 3FXMA 4LG5B 4JNDA 2JFTA 3JRQA 4DS8B 5D2UA 2I44A 2V06A 3W44A 2PK0A 4RA2A 4RAFA 2IQ1A 3NMTB 2JFRA 2POMA 5F1MA 1TXOA 2P8EA 3W45A 2ISNA 3KDJB 3RT0A 2PNQA 3F79A 2J4OA 4OICB 3ES2A 3W43A 3RNRA 3UJKA 3FXJA 3EQ2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3W40 A;  4YZH A;  2J86 A;  3FXL A;  3MQ3 A;  5JO1 B;  4WVO B;  3W42 A;  3QN1 B;  3N3C A;  3NMV B;  3W41 A;  3D8K A;  3FXK A;  4LGA B;  2JFS A;  5JO2 B;  3ZVU B;  4N0G A;  3UJL B;  1A6Q A;  4LA7 B;  2POP A;  3FXO A;  4DA1 A;  2CM1 A;  2I0O A;  5ITI A;  2J82 A;  2XZV A;  4LGB B;  2IRM A;  3UJG B;  4RAG A;  3T9Q A;  3T91 A;  3KB3 B;  4YZG A;  3PU9 A;  3ZT9 A;  2Y09 A;  3KE6 A;  3NMN B;  3FXM A;  4LG5 B;  4JND A;  2JFT A;  3JRQ A;  4DS8 B;  5D2U A;  2I44 A;  2V06 A;  3W44 A;  2PK0 A;  4RA2 A;  4RAF A;  2IQ1 A;  3NMT B;  2JFR A;  2POM A;  5F1M A;  1TXO A;  2P8E A;  3W45 A;  2ISN A;  3KDJ B;  3RT0 A;  2PNQ A;  3F79 A;  2J4O A;  4OIC B;  3ES2 A;  3W43 A;  3RNR A;  3UJK A;  3FXJ A;  3EQ2 A; 
#chains in the Genus database with same CATH topology
 3W40 A;  4YZH A;  2J86 A;  3FXL A;  3MQ3 A;  5JO1 B;  4WVO B;  3W42 A;  3QN1 B;  3N3C A;  3NMV B;  3W41 A;  4IIP A;  3D8K A;  3FXK A;  4LGA B;  2JFS A;  5JO2 B;  3ZVU B;  4N0G A;  3UJL B;  1A6Q A;  4LA7 B;  2POP A;  3FXO A;  4DA1 A;  2CM1 A;  2I0O A;  5ITI A;  2J82 A;  2XZV A;  4LGB B;  2IRM A;  3UJG B;  4RAG A;  3T9Q A;  3T91 A;  3KB3 B;  4YZG A;  3PU9 A;  3ZT9 A;  2Y09 A;  3KE6 A;  3NMN B;  3FXM A;  4LG5 B;  4JND A;  2JFT A;  3JRQ A;  4DS8 B;  4IIK A;  5D2U A;  2I44 A;  2V06 A;  3W44 A;  2PK0 A;  4RA2 A;  4RAF A;  2IQ1 A;  3NMT B;  2JFR A;  2POM A;  5F1M A;  1TXO A;  2P8E A;  3W45 A;  2ISN A;  3KDJ B;  3RT0 A;  2PNQ A;  3F79 A;  2J4O A;  4OIC B;  3ES2 A;  3W43 A;  3RNR A;  3UJK A;  3FXJ A;  3EQ2 A; 
#chains in the Genus database with same CATH homology
 3W40 A;  4YZH A;  2J86 A;  3FXL A;  3MQ3 A;  5JO1 B;  4WVO B;  3W42 A;  3QN1 B;  3N3C A;  3NMV B;  3W41 A;  3D8K A;  3FXK A;  4LGA B;  2JFS A;  5JO2 B;  3ZVU B;  4N0G A;  3UJL B;  1A6Q A;  4LA7 B;  2POP A;  3FXO A;  4DA1 A;  2CM1 A;  2I0O A;  5ITI A;  2J82 A;  2XZV A;  4LGB B;  2IRM A;  3UJG B;  4RAG A;  3T9Q A;  3T91 A;  3KB3 B;  4YZG A;  3PU9 A;  3ZT9 A;  2Y09 A;  3KE6 A;  3NMN B;  3FXM A;  4LG5 B;  4JND A;  2JFT A;  3JRQ A;  4DS8 B;  5D2U A;  2I44 A;  2V06 A;  3W44 A;  2PK0 A;  4RA2 A;  4RAF A;  2IQ1 A;  3NMT B;  2JFR A;  2POM A;  5F1M A;  1TXO A;  2P8E A;  3W45 A;  2ISN A;  3KDJ B;  3RT0 A;  2PNQ A;  3F79 A;  2J4O A;  4OIC B;  3ES2 A;  3W43 A;  3RNR A;  3UJK A;  3FXJ A;  3EQ2 A; 
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