2PK8A

Crystal structure of an uncharacterized protein pf0899 from pyrococcus furiosus
Total Genus 29
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
94
structure length
94
Chain Sequence
STRGDLIRILGEIEEKMNELKMDGFNPDIILFGREAYNFLSNLLKKEMEEEGPFTHVSNIKIEILEELGGDAVVIDSKVLGLVPGAAKRIKIIK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Structural genomics, unknown function
molecule keywords Uncharacterized protein PF0899
publication title Structure of the hypothetical protein PF0899 from Pyrococcus furiosus at 1.85 A resolution.
pubmed doi rcsb
source organism Pyrococcus furiosus dsm 3638
total genus 29
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2007-04-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08967 DUF1884 Domain of unknown function (DUF1884)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2320.10 Alpha Beta 2-Layer Sandwich hypothetical protein PF0899 fold hypothetical protein PF0899 domain 2pk8A00
3E8KA 2PK8A 3DKTA 2FSYA 1OHGA 2FT1A 2E0ZA
chains in the Genus database with same CATH superfamily
1WZ2A 3DKTA 3A43A 5AUNA 4DT0A 5AUOA 3A44A 3E8KA 2FT1A 2E0ZA 2DM9A 2KDXA 5AUPA 2LC0A 2PK8A 4EFAE 1YUEA 4DL0E 2DMAA 1OHGA 2FSYA 3V6IA 1QU3A 3K5BA
chains in the Genus database with same CATH topology
3E8KA 2PK8A 3DKTA 2FSYA 1OHGA 2FT1A 2E0ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3E8K A;  2PK8 A;  3DKT A;  2FSY A;  1OHG A;  2FT1 A;  2E0Z A; 
#chains in the Genus database with same CATH topology
 1WZ2 A;  3DKT A;  3A43 A;  5AUN A;  4DT0 A;  5AUO A;  3A44 A;  3E8K A;  2FT1 A;  2E0Z A;  2DM9 A;  2KDX A;  5AUP A;  2LC0 A;  2PK8 A;  4EFA E;  1YUE A;  4DL0 E;  2DMA A;  1OHG A;  2FSY A;  3V6I A;  1QU3 A;  3K5B A; 
#chains in the Genus database with same CATH homology
 3E8K A;  2PK8 A;  3DKT A;  2FSY A;  1OHG A;  2FT1 A;  2E0Z A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...