2PSMC

Crystal structure of interleukin 15 in complex with interleukin 15 receptor alpha
Total Genus 12
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
69
structure length
69
Chain Sequence
TCPPPVSIEHADIRVKNYSVNSRERYVCNSGFKRKAGTSTLIECVINKNTNVAHWTTPSLKCIRDPSLA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Cytokine
source organism Mus musculus
publication title Crystal Structure of the Interleukin-15{middle dot}Interleukin-15 Receptor {alpha} Complex: INSIGHTS INTO TRANS AND CIS PRESENTATION
pubmed doi rcsb
molecule keywords Interleukin-15
total genus 12
structure length 69
sequence length 69
chains with identical sequence F
ec nomenclature
pdb deposition date 2007-05-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00084 Sushi Sushi repeat (SCR repeat)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.230 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 2psmC01
2Z3RB 3IU3I 2ERSA 3NFPI 1Z92B 2ERJA 2PSMC 2Z3QB 4GS7D 2B5ID
chains in the Genus database with same CATH superfamily
2A68D 1E8JA 4AR6A 5M5WL 3PIO1 4V196 4LHNA 3I4ML 2HR5A 5MGNA 1RYQA 3S17L 1R0IA 2XJQA 3KYVA 2E2HL 2WB1P 1TWFL 1YUXA 2VUML 3RZOL 2NVQL 2K2DA 2JA6L 3H99A 4A3LL 1IU5A 4AR4A 2R93L 4RXNA 4A3JL 1T9PA 3S1NL 1QQTA 1VZHA 3GTGL 1VZGA 2H12A 6RXNA 4AHYA 3M4OL 1YK4A 2KKDA 1YUZA 2M6OA 2JI1A 1TWGL 1YK5A 2NVTL 1R0FA 2NVYL 1BQ9A 5GADc 3PIP1 1S30A 1NXEA 1B13A 4A93L 1IW7D 5K2ME 1T9OA 3FDJA 5AI2A 3RZ6A 2CR8A 2PSMC 2JA8L 4BY7L 1B2JA 3PWFA 2RFKB 1TWHL 3B0AB 1OWCA 3GTML 2XJVA 3LWVB 4A3KL 4C3JL 4K9FA 1RDGA 5DM61 5M5XL 1PFVA 1PFUA 2KN9A 3K35A 1YV1A 1BRFA 5M5YL 5EIOC 3S1QL 4AHZA 4E6YA 2EY4E 1JYBA 4AR3A 3MQKB 1TWCL 2R92L 3A44A 4GS7D 3VPBE 2XJPA 2JI3A 5GAEc 3LWQB 2CKCA 1NNQA 4A3GL 3RZDL 2A69D 4G6BA 1H7VA 2DSXA 1IRNA 2A6ED 3GTOL 2YU9L 4POFA 2QL0A 1I3QL 1NXGA 2C6BA 3H9CA 4A3EL 4AYBP 3H0GL 3LPEB 1IU6A 1S2ZA 4TPUA 3LWRB 4AR5A 2E2IL 5DM71 3PKIA 5JVG1 3HOVL 2PVEA 3P8BA 4A3BL 3RYGA 1T9QA 4WFN1 1R0HA 1P7PA 5IYCL 3SS2A 5C4JL 3S2HL 1BFYA 3S16L 4YWLA 5RXNA 4TVMA 2WAQP 3CQZL 2V3BB 4YWMA 2XJTA 2V0FA 2O5JD 2XJRA 4QIWP 1R0GA 5FJ8L 3M3YL 4C3HL 1SFOL 2M4VA 4C2M1 3S2DL 4LHLA 1R0JA 5IP7L 4XGHA 3S1RL 3J7Y1 1R9TL 1BQ8A 3FKIL 1CADA 5JVH1 2BE5D 8RXNA 5C3EL 2AYJA 4AI2A 2PVXA 4BBSL 3KYXA 3KYWA 2ZIXA 4A3ML 1TWAL 3K7AL 3PL5A 2E2JL 1ZRPA 3LNLA 5AN9H 4AHXA 4C3IL 1SMUA 2NVXL 3MPSA 3LWPB 1RDVA 2C6AA 4AI0A 1RYTA 4XXBB 4A3FL 1OWBA 2RDVA 2Z3RB 3B08B 1SMWA 2JA7L 3PO3L 3I4NL 2HVYC 2NYDA 1WJVA 1Y1VL 3RZTA 1F4LA 3PO2L 1QYBA 1FHMA 5IY0A 5GAGc 4AI3A 1LKOA 4JAGA 2APOB 2PYAA 5C44L 3KYUA 5IYBL 5EINC 3PZAA 3GTLL 3JR7A 1I6HL 2AQCA 2JI2A 2Z3QB 4AI1A 3HOXL 2AUSB 3LWOB 1QCVA 3HOYL 5IP9L 2VL6A 4Y7NL 2R7ZL 4JADA 4A3IL 4A3CL 2B5ID 4JAEA 4ZN3B 4AHWA 2GMGA 2PMZP 3MSUA 5AI3A 2A6HD 4ZN1B 1LKPA 3GTQL 3IU3I 2ERSA 2XJUA 3KYYA 1B2OA 5MF6A 3QQCE 5MFPA 2CKAA 3HOWL 4A3DL 7RXNA 3ZG6A 4B8CD 1VCXA 2PPTA 1WCML 2M6PA 4X6AL 3P2AA 5MLC3 3HAXC 2J9UB 2XJSA 3HKZP 4UY81 4POGA 3H3VM 5IYDL 3HOZL 1ODHA 4BY1L 4Y52L 2JA5L 1S24A 1Z92B 1PFWA 1PZXA 5FLML 3GTPL 2M4YA 3S1ML 2V0EA 1LKMA 4BBRL 1DX8A 5C4XL 3S14L 1RWDA 1BE7A 3WWNB 5GAHc 1SMMA 3S15L 5M3ML 1LTLA 5MFZA 3HJYB 2LCQA 4BXXL 1C09A 4ME3A 3QVDA 4JAFA 1B71A 3PKJA 1RB9A 1VZIA 2L0ZA 3HJWB 2B63L 3HOUL 1IROA 5M3FL 1PFYA 3WWLA 1I50L 3J7Z1 1FHHA 5H1Sc 2Y0SP 4U671 1Y1WL 3GTKL 1DVBA 2ERJA 3GTJL 3H97A 2MS3A 3NFPI 3H9BA 1K83L 1CAAA
chains in the Genus database with same CATH topology
1LKPA 1BRFA 2A68D 3IU3I 1E8JA 2ERSA 2XJUA 3KYYA 1B2OA 5EIOC 4LHLA 5MF6A 1R0JA 3QQCE 5MFPA 4XGHA 4AR6A 3PIO1 4V196 4LHNA 2CKAA 3J7Y1 1BQ8A 7RXNA 2HR5A 3ZG6A 4B8CD 5MGNA 1CADA 1RYQA 1VCXA 2BE5D 4AHZA 1R0IA 5JVH1 4E6YA 2PPTA 8RXNA 2XJQA 2AYJA 2M6PA 4AI2A 2PVXA 3P2AA 5MLC3 3KYVA 3KYXA 3KYWA 2J9UB 1JYBA 2XJSA 2ZIXA 4AR3A 4POGA 4UY81 3A44A 1ODHA 1YUXA 4GS7D 3VPBE 2XJPA 2JI3A 1ZRPA 5GAEc 2K2DA 1S24A 1Z92B 3LNLA 5AN9H 1IU5A 4AR4A 4AHXA 4RXNA 2CKCA 1NNQA 1SMUA 1T9PA 2M4YA 2V0EA 3MPSA 1RDVA 1VZHA 1LKMA 1VZGA 2H12A 6RXNA 2C6AA 4AHYA 1DX8A 2A69D 4G6BA 4AI0A 1H7VA 2DSXA 1IRNA 1RYTA 1YK4A 2A6ED 4XXBB 2KKDA 1OWBA 2RDVA 2Z3RB 4POFA 1YUZA 2M6OA 3B08B 1SMWA 1RWDA 2JI1A 1YK5A 2NYDA 2QL0A 1NXGA 1WJVA 3RZTA 2C6BA 1BE7A 1R0FA 1BQ9A 1QYBA 5GADc 3LPEB 1FHMA 3WWNB 5IY0A 5GAHc 1SMMA 5GAGc 4AI3A 1IU6A 1S2ZA 1LKOA 4TPUA 4JAGA 1LTLA 5MFZA 3PIP1 1S30A 2LCQA 1NXEA 1B13A 4AR5A 2PYAA 3KYUA 5DM71 3PKIA 5JVG1 1C09A 2PVEA 3P8BA 4ME3A 5EINC 3PZAA 1IW7D 3RYGA 5K2ME 1T9OA 3QVDA 1T9QA 5AI2A 4WFN1 1R0HA 3RZ6A 4JAFA 2CR8A 2JI2A 2PSMC 1B71A 2Z3QB 3PKJA 4AI1A 1RB9A 3SS2A 1B2JA 3PWFA 1BFYA 1VZIA 2L0ZA 3B0AB 1QCVA 1OWCA 1IROA 2VL6A 4YWLA 2XJVA 5RXNA 4TVMA 4JADA 2B5ID 2V3BB 4YWMA 3WWLA 4JAEA 3J7Z1 4K9FA 1FHHA 1RDGA 2XJTA 5H1Sc 4U671 4ZN3B 4AHWA 5DM61 2V0FA 2O5JD 1DVBA 2XJRA 2ERJA 2GMGA 1R0GA 2MS3A 3MSUA 2KN9A 3K35A 5AI3A 3NFPI 2A6HD 4ZN1B 2M4VA 1CAAA 1YV1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Z3R B;  3IU3 I;  2ERS A;  3NFP I;  1Z92 B;  2ERJ A;  2PSM C;  2Z3Q B;  4GS7 D;  2B5I D; 
#chains in the Genus database with same CATH topology
 2A68 D;  1E8J A;  4AR6 A;  5M5W L;  3PIO 1;  4V19 6;  4LHN A;  3I4M L;  2HR5 A;  5MGN A;  1RYQ A;  3S17 L;  1R0I A;  2XJQ A;  3KYV A;  2E2H L;  2WB1 P;  1TWF L;  1YUX A;  2VUM L;  3RZO L;  2NVQ L;  2K2D A;  2JA6 L;  3H99 A;  4A3L L;  1IU5 A;  4AR4 A;  2R93 L;  4RXN A;  4A3J L;  1T9P A;  3S1N L;  1QQT A;  1VZH A;  3GTG L;  1VZG A;  2H12 A;  6RXN A;  4AHY A;  3M4O L;  1YK4 A;  2KKD A;  1YUZ A;  2M6O A;  2JI1 A;  1TWG L;  1YK5 A;  2NVT L;  1R0F A;  2NVY L;  1BQ9 A;  5GAD c;  3PIP 1;  1S30 A;  1NXE A;  1B13 A;  4A93 L;  1IW7 D;  5K2M E;  1T9O A;  3FDJ A;  5AI2 A;  3RZ6 A;  2CR8 A;  2PSM C;  2JA8 L;  4BY7 L;  1B2J A;  3PWF A;  2RFK B;  1TWH L;  3B0A B;  1OWC A;  3GTM L;  2XJV A;  3LWV B;  4A3K L;  4C3J L;  4K9F A;  1RDG A;  5DM6 1;  5M5X L;  1PFV A;  1PFU A;  2KN9 A;  3K35 A;  1YV1 A;  1BRF A;  5M5Y L;  5EIO C;  3S1Q L;  4AHZ A;  4E6Y A;  2EY4 E;  1JYB A;  4AR3 A;  3MQK B;  1TWC L;  2R92 L;  3A44 A;  4GS7 D;  3VPB E;  2XJP A;  2JI3 A;  5GAE c;  3LWQ B;  2CKC A;  1NNQ A;  4A3G L;  3RZD L;  2A69 D;  4G6B A;  1H7V A;  2DSX A;  1IRN A;  2A6E D;  3GTO L;  2YU9 L;  4POF A;  2QL0 A;  1I3Q L;  1NXG A;  2C6B A;  3H9C A;  4A3E L;  4AYB P;  3H0G L;  3LPE B;  1IU6 A;  1S2Z A;  4TPU A;  3LWR B;  4AR5 A;  2E2I L;  5DM7 1;  3PKI A;  5JVG 1;  3HOV L;  2PVE A;  3P8B A;  4A3B L;  3RYG A;  1T9Q A;  4WFN 1;  1R0H A;  1P7P A;  5IYC L;  3SS2 A;  5C4J L;  3S2H L;  1BFY A;  3S16 L;  4YWL A;  5RXN A;  4TVM A;  2WAQ P;  3CQZ L;  2V3B B;  4YWM A;  2XJT A;  2V0F A;  2O5J D;  2XJR A;  4QIW P;  1R0G A;  5FJ8 L;  3M3Y L;  4C3H L;  1SFO L;  2M4V A;  4C2M 1;  3S2D L;  4LHL A;  1R0J A;  5IP7 L;  4XGH A;  3S1R L;  3J7Y 1;  1R9T L;  1BQ8 A;  3FKI L;  1CAD A;  5JVH 1;  2BE5 D;  8RXN A;  5C3E L;  2AYJ A;  4AI2 A;  2PVX A;  4BBS L;  3KYX A;  3KYW A;  2ZIX A;  4A3M L;  1TWA L;  3K7A L;  3PL5 A;  2E2J L;  1ZRP A;  3LNL A;  5AN9 H;  4AHX A;  4C3I L;  1SMU A;  2NVX L;  3MPS A;  3LWP B;  1RDV A;  2C6A A;  4AI0 A;  1RYT A;  4XXB B;  4A3F L;  1OWB A;  2RDV A;  2Z3R B;  3B08 B;  1SMW A;  2JA7 L;  3PO3 L;  3I4N L;  2HVY C;  2NYD A;  1WJV A;  1Y1V L;  3RZT A;  1F4L A;  3PO2 L;  1QYB A;  1FHM A;  5IY0 A;  5GAG c;  4AI3 A;  1LKO A;  4JAG A;  2APO B;  2PYA A;  5C44 L;  3KYU A;  5IYB L;  5EIN C;  3PZA A;  3GTL L;  3JR7 A;  1I6H L;  2AQC A;  2JI2 A;  2Z3Q B;  4AI1 A;  3HOX L;  2AUS B;  3LWO B;  1QCV A;  3HOY L;  5IP9 L;  2VL6 A;  4Y7N L;  2R7Z L;  4JAD A;  4A3I L;  4A3C L;  2B5I D;  4JAE A;  4ZN3 B;  4AHW A;  2GMG A;  2PMZ P;  3MSU A;  5AI3 A;  2A6H D;  4ZN1 B;  1LKP A;  3GTQ L;  3IU3 I;  2ERS A;  2XJU A;  3KYY A;  1B2O A;  5MF6 A;  3QQC E;  5MFP A;  2CKA A;  3HOW L;  4A3D L;  7RXN A;  3ZG6 A;  4B8C D;  1VCX A;  2PPT A;  1WCM L;  2M6P A;  4X6A L;  3P2A A;  5MLC 3;  3HAX C;  2J9U B;  2XJS A;  3HKZ P;  4UY8 1;  4POG A;  3H3V M;  5IYD L;  3HOZ L;  1ODH A;  4BY1 L;  4Y52 L;  2JA5 L;  1S24 A;  1Z92 B;  1PFW A;  1PZX A;  5FLM L;  3GTP L;  2M4Y A;  3S1M L;  2V0E A;  1LKM A;  4BBR L;  1DX8 A;  5C4X L;  3S14 L;  1RWD A;  1BE7 A;  3WWN B;  5GAH c;  1SMM A;  3S15 L;  5M3M L;  1LTL A;  5MFZ A;  3HJY B;  2LCQ A;  4BXX L;  1C09 A;  4ME3 A;  3QVD A;  4JAF A;  1B71 A;  3PKJ A;  1RB9 A;  1VZI A;  2L0Z A;  3HJW B;  2B63 L;  3HOU L;  1IRO A;  5M3F L;  1PFY A;  3WWL A;  1I50 L;  3J7Z 1;  1FHH A;  5H1S c;  2Y0S P;  4U67 1;  1Y1W L;  3GTK L;  1DVB A;  2ERJ A;  3GTJ L;  3H97 A;  2MS3 A;  3NFP I;  3H9B A;  1K83 L;  1CAA A; 
#chains in the Genus database with same CATH homology
 1LKP A;  1BRF A;  2A68 D;  3IU3 I;  1E8J A;  2ERS A;  2XJU A;  3KYY A;  1B2O A;  5EIO C;  4LHL A;  5MF6 A;  1R0J A;  3QQC E;  5MFP A;  4XGH A;  4AR6 A;  3PIO 1;  4V19 6;  4LHN A;  2CKA A;  3J7Y 1;  1BQ8 A;  7RXN A;  2HR5 A;  3ZG6 A;  4B8C D;  5MGN A;  1CAD A;  1RYQ A;  1VCX A;  2BE5 D;  4AHZ A;  1R0I A;  5JVH 1;  4E6Y A;  2PPT A;  8RXN A;  2XJQ A;  2AYJ A;  2M6P A;  4AI2 A;  2PVX A;  3P2A A;  5MLC 3;  3KYV A;  3KYX A;  3KYW A;  2J9U B;  1JYB A;  2XJS A;  2ZIX A;  4AR3 A;  4POG A;  4UY8 1;  3A44 A;  1ODH A;  1YUX A;  4GS7 D;  3VPB E;  2XJP A;  2JI3 A;  1ZRP A;  5GAE c;  2K2D A;  1S24 A;  1Z92 B;  3LNL A;  5AN9 H;  1IU5 A;  4AR4 A;  4AHX A;  4RXN A;  2CKC A;  1NNQ A;  1SMU A;  1T9P A;  2M4Y A;  2V0E A;  3MPS A;  1RDV A;  1VZH A;  1LKM A;  1VZG A;  2H12 A;  6RXN A;  2C6A A;  4AHY A;  1DX8 A;  2A69 D;  4G6B A;  4AI0 A;  1H7V A;  2DSX A;  1IRN A;  1RYT A;  1YK4 A;  2A6E D;  4XXB B;  2KKD A;  1OWB A;  2RDV A;  2Z3R B;  4POF A;  1YUZ A;  2M6O A;  3B08 B;  1SMW A;  1RWD A;  2JI1 A;  1YK5 A;  2NYD A;  2QL0 A;  1NXG A;  1WJV A;  3RZT A;  2C6B A;  1BE7 A;  1R0F A;  1BQ9 A;  1QYB A;  5GAD c;  3LPE B;  1FHM A;  3WWN B;  5IY0 A;  5GAH c;  1SMM A;  5GAG c;  4AI3 A;  1IU6 A;  1S2Z A;  1LKO A;  4TPU A;  4JAG A;  1LTL A;  5MFZ A;  3PIP 1;  1S30 A;  2LCQ A;  1NXE A;  1B13 A;  4AR5 A;  2PYA A;  3KYU A;  5DM7 1;  3PKI A;  5JVG 1;  1C09 A;  2PVE A;  3P8B A;  4ME3 A;  5EIN C;  3PZA A;  1IW7 D;  3RYG A;  5K2M E;  1T9O A;  3QVD A;  1T9Q A;  5AI2 A;  4WFN 1;  1R0H A;  3RZ6 A;  4JAF A;  2CR8 A;  2JI2 A;  2PSM C;  1B71 A;  2Z3Q B;  3PKJ A;  4AI1 A;  1RB9 A;  3SS2 A;  1B2J A;  3PWF A;  1BFY A;  1VZI A;  2L0Z A;  3B0A B;  1QCV A;  1OWC A;  1IRO A;  2VL6 A;  4YWL A;  2XJV A;  5RXN A;  4TVM A;  4JAD A;  2B5I D;  2V3B B;  4YWM A;  3WWL A;  4JAE A;  3J7Z 1;  4K9F A;  1FHH A;  1RDG A;  2XJT A;  5H1S c;  4U67 1;  4ZN3 B;  4AHW A;  5DM6 1;  2V0F A;  2O5J D;  1DVB A;  2XJR A;  2ERJ A;  2GMG A;  1R0G A;  2MS3 A;  3MSU A;  2KN9 A;  3K35 A;  5AI3 A;  3NFP I;  2A6H D;  4ZN1 B;  2M4V A;  1CAA A;  1YV1 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...