2PT3A

Crystal structure of bovine lactoperoxidase at 2.34 a resolution reveals multiple anion binding sites
Total Genus 185
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
185
sequence length
595
structure length
594
Chain Sequence
SWEVGCGAPVPLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSLAREQINAVTSFLDASLVYGSEPLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPPYQGYNNSVDPRISNVFTFAFRFGHMEVPSTVSRLDENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVSFSRLICDNTHITKVPLHAFQANNYPHDFVDCSTVDKLDLSPWASREN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Lactoperoxidase
publication title Crystal structure of bovine lactoperoxidase at 2.34 A resolution reveals multiple anion binding sites
rcsb
total genus 185
structure length 594
sequence length 595
ec nomenclature ec 1.11.1.7: Peroxidase.
pdb deposition date 2007-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03098 An_peroxidase Animal haem peroxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.640.10 Mainly Alpha Orthogonal Bundle Myeloperoxidase, subunit C Haem peroxidase domain superfamily, animal type 2pt3A00
3N8YB 1DIYA 4GM7A 3RKEA 5B72A 3QMOA 3MDLA 4RRYA 3FNLA 1DDXA 4MSFA 1IGZA 3N8YA 5FF1A 3I6NA 3GCLA 3HS5A 3PY4A 2Z5ZA 4OTJA 4OEKA 4FM5A 4RS0A 6COXA 3KRKA 4M10A 3NT1A 3ZS0C 4KVLA 1D7WC 3BXIA 4QJQA 2OYUP 1DNWC 1IGXA 4IG5A 3NIUA 4KSZA 2OYEP 1PRHA 3GCJA 3OGWA 4Z0LA 4OTYA 1EQGA 4M11A 4NT3A 3R5QA 3NTGA 3LN1A 3QL6A 3N8VA 4O1ZA 3KK6A 4N7AA 1PGEA 1PTHA 2IKCA 3FAQA 4GN6A 5JVZA 3Q9KA 4PH9A 3S4FA 2QPKA 5FIWC 3TZIA 2OJVA 3QF1A 3F9PC 3Q7DA 1DNUC 1CVUA 3N8ZA 4KVKA 1HT5A 4C1MC 2AYLA 4HHRA 5FDQA 5KIRA 3RR3A 4QYQA 3KRQA 1CXPC 2IPSA 2R5LA 3LN0A 4NJBA 3ERHA 2QRBA 3GC1A 3MQEA 1EQHA 4RRZA 3SXVA 2GJMA 3TGYA 1CX2A 1FE2A 1D5LC 3N8WB 3NTBA 3N8FA 3HS6A 1EBVA 4E1GA 4RRXA 1U67A 3V6QA 2PT3A 3PGHA 2O86A 3NYHA 4DL1C 3R5OA 4KVJA 5IKTA 3GCKA 3OLTA 3R4XA 5JVYA 3HS7A 3QH0A 1D2VC 3ERIA 2QQTA 2EFBA 3NAKA 5IKVA 2EHAA 3ZS1C 3OLUA 5F1AA 5GH0A 5IKQA 5GLSA 4LJJA 5F19A 3N8XA 1Q4GA 3R55A 4HHSA 5IKRA 3N8WA 1MYPC 2PUMA 5COXA 1HT8A 2NQXA 1MHLC 4Y55A 4PNXA 3UBAA 5HPWA 1PXXA 1CQEA 4RUTA 5JW1A 4RRWA 4COXA 2E9EA
chains in the Genus database with same CATH superfamily
3N8YB 1DIYA 4GM7A 3RKEA 5B72A 3QMOA 3MDLA 4RRYA 3FNLA 1DDXA 4MSFA 1IGZA 3N8YA 5FF1A 3I6NA 3GCLA 3HS5A 3PY4A 2Z5ZA 4OTJA 4OEKA 4FM5A 4RS0A 6COXA 3KRKA 4M10A 3NT1A 3ZS0C 4KVLA 1D7WC 3BXIA 4QJQA 2OYUP 1DNWC 1IGXA 4IG5A 3NIUA 4KSZA 2OYEP 1PRHA 3GCJA 3OGWA 4Z0LA 4OTYA 1EQGA 4M11A 4NT3A 3R5QA 3NTGA 3LN1A 3QL6A 3N8VA 4O1ZA 3KK6A 4N7AA 1PGEA 1PTHA 2IKCA 3FAQA 4GN6A 5JVZA 3Q9KA 4PH9A 3S4FA 2QPKA 5FIWC 3TZIA 2OJVA 3QF1A 3F9PC 3Q7DA 1DNUC 1CVUA 3N8ZA 4KVKA 1HT5A 4C1MC 2AYLA 4HHRA 5FDQA 5KIRA 3RR3A 4QYQA 3KRQA 1CXPC 2IPSA 2R5LA 3LN0A 4NJBA 3ERHA 2QRBA 3GC1A 3MQEA 1EQHA 4RRZA 3SXVA 2GJMA 3TGYA 1CX2A 1FE2A 1D5LC 3N8WB 3NTBA 3N8FA 3HS6A 1EBVA 4E1GA 4RRXA 1U67A 3V6QA 2PT3A 3PGHA 2O86A 3NYHA 4DL1C 3R5OA 4KVJA 5IKTA 3GCKA 3OLTA 3R4XA 5JVYA 3HS7A 3QH0A 1D2VC 3ERIA 2QQTA 2EFBA 3NAKA 5IKVA 2EHAA 3ZS1C 3OLUA 5F1AA 5GH0A 5IKQA 5GLSA 4LJJA 5F19A 3N8XA 1Q4GA 3R55A 4HHSA 5IKRA 3N8WA 1MYPC 2PUMA 5COXA 1HT8A 2NQXA 1MHLC 4Y55A 4PNXA 3UBAA 5HPWA 1PXXA 1CQEA 4RUTA 5JW1A 4RRWA 4COXA 2E9EA
chains in the Genus database with same CATH topology
3N8YB 1DIYA 4GM7A 3RKEA 5B72A 3QMOA 3MDLA 4RRYA 3FNLA 1DDXA 4MSFA 1IGZA 3N8YA 5FF1A 3I6NA 3GCLA 3HS5A 3PY4A 2Z5ZA 4OTJA 4OEKA 4FM5A 4RS0A 6COXA 3KRKA 4M10A 3NT1A 3ZS0C 4KVLA 1D7WC 3BXIA 4QJQA 2OYUP 1DNWC 1IGXA 4IG5A 3NIUA 4KSZA 2OYEP 1PRHA 3GCJA 3OGWA 4Z0LA 4OTYA 1EQGA 4M11A 4NT3A 3R5QA 3NTGA 3LN1A 3QL6A 3N8VA 4O1ZA 3KK6A 4N7AA 1PGEA 1PTHA 2IKCA 3FAQA 4GN6A 5JVZA 3Q9KA 4PH9A 3S4FA 2QPKA 5FIWC 3TZIA 2OJVA 3QF1A 3F9PC 3Q7DA 1DNUC 1CVUA 3N8ZA 4KVKA 1HT5A 4C1MC 2AYLA 4HHRA 5FDQA 5KIRA 3RR3A 4QYQA 3KRQA 1CXPC 2IPSA 2R5LA 3LN0A 4NJBA 3ERHA 2QRBA 3GC1A 3MQEA 1EQHA 4RRZA 3SXVA 2GJMA 3TGYA 1CX2A 1FE2A 1D5LC 3N8WB 3NTBA 3N8FA 3HS6A 1EBVA 4E1GA 4RRXA 1U67A 3V6QA 2PT3A 3PGHA 2O86A 3NYHA 4DL1C 3R5OA 4KVJA 5IKTA 3GCKA 3OLTA 3R4XA 5JVYA 3HS7A 3QH0A 1D2VC 3ERIA 2QQTA 2EFBA 3NAKA 5IKVA 2EHAA 3ZS1C 3OLUA 5F1AA 5GH0A 5IKQA 5GLSA 4LJJA 5F19A 3N8XA 1Q4GA 3R55A 4HHSA 5IKRA 3N8WA 1MYPC 2PUMA 5COXA 1HT8A 2NQXA 1MHLC 4Y55A 4PNXA 3UBAA 5HPWA 1PXXA 1CQEA 4RUTA 5JW1A 4RRWA 4COXA 2E9EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3N8Y B;  1DIY A;  4GM7 A;  3RKE A;  5B72 A;  3QMO A;  3MDL A;  4RRY A;  3FNL A;  1DDX A;  4MSF A;  1IGZ A;  3N8Y A;  5FF1 A;  3I6N A;  3GCL A;  3HS5 A;  3PY4 A;  2Z5Z A;  4OTJ A;  4OEK A;  4FM5 A;  4RS0 A;  6COX A;  3KRK A;  4M10 A;  3NT1 A;  3ZS0 C;  4KVL A;  1D7W C;  3BXI A;  4QJQ A;  2OYU P;  1DNW C;  1IGX A;  4IG5 A;  3NIU A;  4KSZ A;  2OYE P;  1PRH A;  3GCJ A;  3OGW A;  4Z0L A;  4OTY A;  1EQG A;  4M11 A;  4NT3 A;  3R5Q A;  3NTG A;  3LN1 A;  3QL6 A;  3N8V A;  4O1Z A;  3KK6 A;  4N7A A;  1PGE A;  1PTH A;  2IKC A;  3FAQ A;  4GN6 A;  5JVZ A;  3Q9K A;  4PH9 A;  3S4F A;  2QPK A;  5FIW C;  3TZI A;  2OJV A;  3QF1 A;  3F9P C;  3Q7D A;  1DNU C;  1CVU A;  3N8Z A;  4KVK A;  1HT5 A;  4C1M C;  2AYL A;  4HHR A;  5FDQ A;  5KIR A;  3RR3 A;  4QYQ A;  3KRQ A;  1CXP C;  2IPS A;  2R5L A;  3LN0 A;  4NJB A;  3ERH A;  2QRB A;  3GC1 A;  3MQE A;  1EQH A;  4RRZ A;  3SXV A;  2GJM A;  3TGY A;  1CX2 A;  1FE2 A;  1D5L C;  3N8W B;  3NTB A;  3N8F A;  3HS6 A;  1EBV A;  4E1G A;  4RRX A;  1U67 A;  3V6Q A;  2PT3 A;  3PGH A;  2O86 A;  3NYH A;  4DL1 C;  3R5O A;  4KVJ A;  5IKT A;  3GCK A;  3OLT A;  3R4X A;  5JVY A;  3HS7 A;  3QH0 A;  1D2V C;  3ERI A;  2QQT A;  2EFB A;  3NAK A;  5IKV A;  2EHA A;  3ZS1 C;  3OLU A;  5F1A A;  5GH0 A;  5IKQ A;  5GLS A;  4LJJ A;  5F19 A;  3N8X A;  1Q4G A;  3R55 A;  4HHS A;  5IKR A;  3N8W A;  1MYP C;  2PUM A;  5COX A;  1HT8 A;  2NQX A;  1MHL C;  4Y55 A;  4PNX A;  3UBA A;  5HPW A;  1PXX A;  1CQE A;  4RUT A;  5JW1 A;  4RRW A;  4COX A;  2E9E A; 
#chains in the Genus database with same CATH topology
 3N8Y B;  1DIY A;  4GM7 A;  3RKE A;  5B72 A;  3QMO A;  3MDL A;  4RRY A;  3FNL A;  1DDX A;  4MSF A;  1IGZ A;  3N8Y A;  5FF1 A;  3I6N A;  3GCL A;  3HS5 A;  3PY4 A;  2Z5Z A;  4OTJ A;  4OEK A;  4FM5 A;  4RS0 A;  6COX A;  3KRK A;  4M10 A;  3NT1 A;  3ZS0 C;  4KVL A;  1D7W C;  3BXI A;  4QJQ A;  2OYU P;  1DNW C;  1IGX A;  4IG5 A;  3NIU A;  4KSZ A;  2OYE P;  1PRH A;  3GCJ A;  3OGW A;  4Z0L A;  4OTY A;  1EQG A;  4M11 A;  4NT3 A;  3R5Q A;  3NTG A;  3LN1 A;  3QL6 A;  3N8V A;  4O1Z A;  3KK6 A;  4N7A A;  1PGE A;  1PTH A;  2IKC A;  3FAQ A;  4GN6 A;  5JVZ A;  3Q9K A;  4PH9 A;  3S4F A;  2QPK A;  5FIW C;  3TZI A;  2OJV A;  3QF1 A;  3F9P C;  3Q7D A;  1DNU C;  1CVU A;  3N8Z A;  4KVK A;  1HT5 A;  4C1M C;  2AYL A;  4HHR A;  5FDQ A;  5KIR A;  3RR3 A;  4QYQ A;  3KRQ A;  1CXP C;  2IPS A;  2R5L A;  3LN0 A;  4NJB A;  3ERH A;  2QRB A;  3GC1 A;  3MQE A;  1EQH A;  4RRZ A;  3SXV A;  2GJM A;  3TGY A;  1CX2 A;  1FE2 A;  1D5L C;  3N8W B;  3NTB A;  3N8F A;  3HS6 A;  1EBV A;  4E1G A;  4RRX A;  1U67 A;  3V6Q A;  2PT3 A;  3PGH A;  2O86 A;  3NYH A;  4DL1 C;  3R5O A;  4KVJ A;  5IKT A;  3GCK A;  3OLT A;  3R4X A;  5JVY A;  3HS7 A;  3QH0 A;  1D2V C;  3ERI A;  2QQT A;  2EFB A;  3NAK A;  5IKV A;  2EHA A;  3ZS1 C;  3OLU A;  5F1A A;  5GH0 A;  5IKQ A;  5GLS A;  4LJJ A;  5F19 A;  3N8X A;  1Q4G A;  3R55 A;  4HHS A;  5IKR A;  3N8W A;  1MYP C;  2PUM A;  5COX A;  1HT8 A;  2NQX A;  1MHL C;  4Y55 A;  4PNX A;  3UBA A;  5HPW A;  1PXX A;  1CQE A;  4RUT A;  5JW1 A;  4RRW A;  4COX A;  2E9E A; 
#chains in the Genus database with same CATH homology
 3N8Y B;  1DIY A;  4GM7 A;  3RKE A;  5B72 A;  3QMO A;  3MDL A;  4RRY A;  3FNL A;  1DDX A;  4MSF A;  1IGZ A;  3N8Y A;  5FF1 A;  3I6N A;  3GCL A;  3HS5 A;  3PY4 A;  2Z5Z A;  4OTJ A;  4OEK A;  4FM5 A;  4RS0 A;  6COX A;  3KRK A;  4M10 A;  3NT1 A;  3ZS0 C;  4KVL A;  1D7W C;  3BXI A;  4QJQ A;  2OYU P;  1DNW C;  1IGX A;  4IG5 A;  3NIU A;  4KSZ A;  2OYE P;  1PRH A;  3GCJ A;  3OGW A;  4Z0L A;  4OTY A;  1EQG A;  4M11 A;  4NT3 A;  3R5Q A;  3NTG A;  3LN1 A;  3QL6 A;  3N8V A;  4O1Z A;  3KK6 A;  4N7A A;  1PGE A;  1PTH A;  2IKC A;  3FAQ A;  4GN6 A;  5JVZ A;  3Q9K A;  4PH9 A;  3S4F A;  2QPK A;  5FIW C;  3TZI A;  2OJV A;  3QF1 A;  3F9P C;  3Q7D A;  1DNU C;  1CVU A;  3N8Z A;  4KVK A;  1HT5 A;  4C1M C;  2AYL A;  4HHR A;  5FDQ A;  5KIR A;  3RR3 A;  4QYQ A;  3KRQ A;  1CXP C;  2IPS A;  2R5L A;  3LN0 A;  4NJB A;  3ERH A;  2QRB A;  3GC1 A;  3MQE A;  1EQH A;  4RRZ A;  3SXV A;  2GJM A;  3TGY A;  1CX2 A;  1FE2 A;  1D5L C;  3N8W B;  3NTB A;  3N8F A;  3HS6 A;  1EBV A;  4E1G A;  4RRX A;  1U67 A;  3V6Q A;  2PT3 A;  3PGH A;  2O86 A;  3NYH A;  4DL1 C;  3R5O A;  4KVJ A;  5IKT A;  3GCK A;  3OLT A;  3R4X A;  5JVY A;  3HS7 A;  3QH0 A;  1D2V C;  3ERI A;  2QQT A;  2EFB A;  3NAK A;  5IKV A;  2EHA A;  3ZS1 C;  3OLU A;  5F1A A;  5GH0 A;  5IKQ A;  5GLS A;  4LJJ A;  5F19 A;  3N8X A;  1Q4G A;  3R55 A;  4HHS A;  5IKR A;  3N8W A;  1MYP C;  2PUM A;  5COX A;  1HT8 A;  2NQX A;  1MHL C;  4Y55 A;  4PNX A;  3UBA A;  5HPW A;  1PXX A;  1CQE A;  4RUT A;  5JW1 A;  4RRW A;  4COX A;  2E9E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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