2PVAA

Oxidized penicillin v acylase from b. sphaericus
Total Genus 96
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
96
sequence length
341
structure length
331
Chain Sequence
SSLSIRTTDDKSLFARTMDFTMEPDSKVIIVPRNYGIRLLEKENVVINNSYAFVGMGSTDITSPVLYDGVNEKGLMGAMLYYATFATYADEPKKGTTGINPVYVISQVLGNCVTVDDVIEKLTSYTLLNEANIILGFAPPLHYTFTDASGESIVIEPDKTGITIHRKTIGVMTNSPGYEWHQTNLRAYIGVTPNPPQDIMMGDLDLTPFGQGAGGLGLPGDFTPSARFLRVAYWKKYTEKAKNETEGVTNLFHILSSVNIPKGVVLTNEGKTDYTIYTSAMCAQSKNYYFKLYDNSRISAVSLMAENLNSQDLITFEWDRKQDIKQLNQVN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
molecule keywords PENICILLIN V ACYLASE
publication title Penicillin V acylase crystal structure reveals new Ntn-hydrolase family members.
pubmed doi rcsb
total genus 96
structure length 331
sequence length 341
chains with identical sequence B, C, D
ec nomenclature ec 3.5.1.11: Penicillin amidase.
pdb deposition date 1998-11-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02275 CBAH Linear amide C-N hydrolases, choloylglycine hydrolase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.60.10 Alpha Beta 4-Layer Sandwich Penicillin V Acylase; Chain A Penicillin V Acylase; Chain A 2pvaA00
2Z71A 2HEZA 2X1EA 2OQCA 2QUYA 3GVZA 3HBCA 2IWMA 3PVAA 2X1DA 2PVAA 4WL2A 2HF0A 2BJGA 3MJIA 2X1CA 2RLCA 2RF8A 5HKEA 2RG2A 4WL3A 2BJFA
chains in the Genus database with same CATH superfamily
2Z71A 2HEZA 3FGTB 2X1EA 2OQCA 2QUYA 3GVZA 3HBCA 2IWMA 3PVAA 2X1DA 2PVAA 4WL2A 2HF0A 2BJGA 3MJIA 2X1CA 2RLCA 3FGWA 2RF8A 5HKEA 2RG2A 4BWCB 4WL3A 3FGRB 3FBXA 2BJFA
chains in the Genus database with same CATH topology
2Z71A 2HEZA 3FGTB 2X1EA 2OQCA 2QUYA 3GVZA 3HBCA 2IWMA 3PVAA 2X1DA 2PVAA 4WL2A 2HF0A 2BJGA 3MJIA 2X1CA 2RLCA 3FGWA 2RF8A 5HKEA 2RG2A 4BWCB 4WL3A 3FGRB 3FBXA 2BJFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Z71 A;  2HEZ A;  2X1E A;  2OQC A;  2QUY A;  3GVZ A;  3HBC A;  2IWM A;  3PVA A;  2X1D A;  2PVA A;  4WL2 A;  2HF0 A;  2BJG A;  3MJI A;  2X1C A;  2RLC A;  2RF8 A;  5HKE A;  2RG2 A;  4WL3 A;  2BJF A; 
#chains in the Genus database with same CATH topology
 2Z71 A;  2HEZ A;  3FGT B;  2X1E A;  2OQC A;  2QUY A;  3GVZ A;  3HBC A;  2IWM A;  3PVA A;  2X1D A;  2PVA A;  4WL2 A;  2HF0 A;  2BJG A;  3MJI A;  2X1C A;  2RLC A;  3FGW A;  2RF8 A;  5HKE A;  2RG2 A;  4BWC B;  4WL3 A;  3FGR B;  3FBX A;  2BJF A; 
#chains in the Genus database with same CATH homology
 2Z71 A;  2HEZ A;  3FGT B;  2X1E A;  2OQC A;  2QUY A;  3GVZ A;  3HBC A;  2IWM A;  3PVA A;  2X1D A;  2PVA A;  4WL2 A;  2HF0 A;  2BJG A;  3MJI A;  2X1C A;  2RLC A;  3FGW A;  2RF8 A;  5HKE A;  2RG2 A;  4BWC B;  4WL3 A;  3FGR B;  3FBX A;  2BJF A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...