2PVIA

Pvuii endonuclease complexed to an iodinated cognate dna
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
156
structure length
156
Chain Sequence
SHPDLNKLLELWPHIQEYQDLALKHGINDIFQDNGGKLLQVLLITGLTVLPGRAGNDAVDNAGQEYELKSINIDLTKGFSTHHHMNPVIIAKARQVPWIFAIYRGIAIEAIYRLEPKDLEFYYDKWERKWYSDGHKDINNPKIPVKYVMEHGTKIY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/dna
molecule keywords DNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*(C38)P*TP*GP*GP*TP*C)-3')
publication title How is modification of the DNA substrate recognized by the PvuII restriction endonuclease?
pubmed rcsb
source organism Proteus vulgaris
total genus 47
structure length 156
sequence length 156
chains with identical sequence B
ec nomenclature ec 3.1.21.4: Type II site-specific deoxyribonuclease.
pdb deposition date 1998-11-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09225 Endonuc-PvuII Restriction endonuclease PvuII
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.210.10 Alpha Beta 3-Layer(aba) Sandwich PvuII Endonuclease; Chain A PVUII Endonuclease, subunit A 2pviA00
2PVIA 1PVIA 3PVIA 1K0ZA 1NI0A 1PVUA 1EYUA 1F0OA 1H56A
chains in the Genus database with same CATH superfamily
2ODHA 4KYWA 1EYUA 2PVIA 1PVIA 3PVIA 2OA9A 1K0ZA 4ESJA 1NI0A 2OAAA 2Q10A 1PVUA 2ODIA 3IMBA 1F0OA 1H56A
chains in the Genus database with same CATH topology
2PVIA 1PVIA 3PVIA 1K0ZA 1NI0A 1PVUA 1EYUA 1F0OA 1H56A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PVI A;  1PVI A;  3PVI A;  1K0Z A;  1NI0 A;  1PVU A;  1EYU A;  1F0O A;  1H56 A; 
#chains in the Genus database with same CATH topology
 2ODH A;  4KYW A;  1EYU A;  2PVI A;  1PVI A;  3PVI A;  2OA9 A;  1K0Z A;  4ESJ A;  1NI0 A;  2OAA A;  2Q10 A;  1PVU A;  2ODI A;  3IMB A;  1F0O A;  1H56 A; 
#chains in the Genus database with same CATH homology
 2PVI A;  1PVI A;  3PVI A;  1K0Z A;  1NI0 A;  1PVU A;  1EYU A;  1F0O A;  1H56 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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