2PVXA

Nmr and x-ray analysis of structural additivity in metal binding site-swapped hybrids of rubredoxin
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
53
structure length
53
Chain Sequence
MKKWVCTVCGYIYDEDAGDPDNGISPGTKFEELPDDWVCPLCGVGKDQFEKLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords Rubredoxin
publication title NMR and X-ray analysis of structural additivity in metal binding site-swapped hybrids of rubredoxin
pubmed doi rcsb
source organism Pyrococcus furiosus
total genus 10
structure length 53
sequence length 53
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2007-05-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 2pvxA00
3SS2A 6RXNA 1T9QA 2VL6A 3KYXA 3KYWA 1T9OA 3PZAA 1YUZA 2KKDA 1RWDA 1QYBA 3RYGA 1CAAA 1B13A 1B2OA 1R0JA 2DSXA 5AI3A 3QVDA 1RDVA 1R0GA 3PWFA 1LKOA 1T9PA 1CADA 1ZRPA 1SMMA 1BQ8A 1NNQA 7RXNA 4ME3A 5AI2A 1SMUA 4YWMA 1DVBA 2QL0A 2M4YA 4K9FA 1DX8A 1BE7A 1RDGA 1IRNA 4POFA 4AR4A 1RYTA 1RB9A 2RDVA 1C09A 1S24A 1IROA 2V3BB 2GMGA 5IY0A 2K2DA 1BQ9A 1R0FA 1E8JA 1YK4A 8RXNA 1BRFA 1JYBA 1LKMA 1S30A 2PVEA 4AR3A 4POGA 1BFYA 4RXNA 1B71A 2MS3A 3A44A 1H7VA 4YWLA 1YV1A 1IU6A 1R0IA 3RZ6A 3MPSA 1VCXA 3KYVA 1LTLA 1LKPA 5RXNA 1FHHA 4AR5A 1R0HA 2KN9A 1YUXA 1S2ZA 2HR5A 4TPUA 1IU5A 1QCVA 1FHMA 2PYAA 4AR6A 3RZTA 3KYUA 1B2JA 2LCQA 1SMWA 1YK5A 2PVXA 3KYYA
chains in the Genus database with same CATH superfamily
3GTGL 3HJYB 2CKCA 2XJTA 6RXNA 3GTML 2VL6A 3HOYL 1RYQA 3LWQB 3PKJA 3RYGA 2M6PA 1B13A 2JI2A 3PO2L 4E6YA 3H97A 3CQZL 2DSXA 3J7Y1 3GTQL 3I4NL 3RZOL 2HVYC 4C3JL 4JADA 4A3EL 3S1QL 1ZRPA 4ZN1B 2JI3A 1BQ8A 3FKIL 1NNQA 3HJWB 1TWGL 3LWVB 1DVBA 2QL0A 5DM61 1PFUA 1DX8A 3S1NL 4AR4A 1RYTA 2M6OA 2RDVA 3M3YL 2CR8A 1ODHA 2PPTA 4B8CD 2V3BB 5IY0A 3GTOL 1IW7D 3B08B 4AI1A 1BRFA 1S30A 3PIP1 2NVQL 2CKAA 1B71A 3HOVL 4C2M1 1H7VA 3NFPI 1R9TL 1YV1A 4Y7NL 2XJUA 3QQCE 3RZ6A 2R92L 3KYVA 3J7Z1 3JR7A 2Z3RB 1YUXA 2HR5A 4AHYA 3P8BA 3S14L 3S1RL 2Y0SP 3HKZP 2A68D 1TWHL 2O5JD 2PMZP 4JAFA 5M5WL 5K2ME 3SS2A 5H1Sc 2B5ID 5MFZA 4WFN1 4GS7D 3KYWA 5M5XL 3PZAA 2YU9L 4Y52L 1QYBA 2E2HL 1B2OA 5IP9L 2B63L 4A3CL 3LWPB 5AI3A 3P2AA 3MSUA 1I3QL 4A3BL 1T9PA 1VZIA 2WB1P 2V0EA 1SMMA 2C6AA 2A6HD 4JAGA 3HAXC 4ME3A 2BE5D 4AHZA 1NXGA 5GAHc 5JVH1 2XJSA 2ERSA 1QQTA 3LNLA 1VZHA 5JVG1 3S2HL 5C4JL 2A6ED 3M4OL 1IROA 1PZXA 4A3JL 3H3VM 1E8JA 1YK4A 4AI0A 2R93L 1Z92B 5C4XL 3PKIA 2NVTL 4LHLA 1TWAL 3S2DL 3VPBE 3A44A 5IYCL 5MGNA 4A3ML 3MPSA 1VCXA 5EINC 1LKPA 3ZG6A 4UY81 3GTLL 2V0FA 2KN9A 4U671 1OWBA 3WWLA 4BBSL 4V196 3H99A 1B2JA 3B0AB 5FJ8L 2XJPA 4A3LL 1YK5A 5C3EL 4A3FL 3K35A 1TWFL 5MF6A 3KYXA 1T9OA 2WAQP 3PL5A 1RWDA 1Y1VL 3S16L 1CAAA 2XJRA 1R0JA 2E2JL 5GAEc 2L0ZA 3K7AL 1R0GA 3RZDL 3PWFA 4BBRL 1CADA 2XJVA 3HOZL 4A93L 2Z3QB 7RXNA 1NXEA 5AI2A 4YWMA 3GTJL 3IU3I 2M4YA 4K9FA 5DM71 5GAGc 1RDGA 3H9CA 3MQKB 2H12A 1IRNA 3I4ML 4C3IL 1C09A 1S24A 1PFWA 1TWCL 5MFPA 1BQ9A 1R0FA 5M3FL 1VZGA 8RXNA 3WWNB 1SFOL 4TVMA 3PIO1 4AHXA 5IYBL 4POGA 2PVEA 2JA7L 2R7ZL 5AN9H 4AI2A 4RXNA 1K83L 2MS3A 3LWOB 2NVYL 1IU6A 1R0IA 2NVXL 1LTLA 1FHHA 1I6HL 5MLC3 1R0HA 4A3GL 4A3KL 1S2ZA 4TPUA 1IU5A 2PYAA 4AR6A 3RZTA 1WCML 1SMWA 2JA6L 2M4VA 4C3HL 2AYJA 2PVXA 3LWRB 4XXBB 5IP7L 5FLML 5M3ML 4XGHA 2VUML 1T9QA 1PFYA 2JI1A 1YUZA 2AQCA 2C6BA 2KKDA 1F4LA 2EY4E 4X6AL 2XJQA 2A69D 3GTPL 3QVDA 1RDVA 1LKOA 3H0GL 3HOXL 4QIWP 3FDJA 4AI3A 1SMUA 3HOUL 5C44L 1OWCA 4LHNA 3LPEB 5M5YL 2RFKB 1BE7A 4POFA 1RB9A 2JA8L 4A3DL 2E2IL 2GMGA 5GADc 2K2DA 2NYDA 3S17L 2APOB 4BXXL 2ERJA 2J9UB 1PFVA 1JYBA 1LKMA 3H9BA 4AR3A 4AYBP 3HOWL 1BFYA 5EIOC 1I50L 2ZIXA 1Y1WL 1WJVA 4YWLA 2PSMC 3PO3L 3GTKL 5RXNA 4AR5A 3S1ML 4G6BA 4BY7L 1P7PA 1QCVA 4JAEA 1FHMA 3KYUA 2LCQA 4A3IL 4ZN3B 2JA5L 5IYDL 4BY1L 3S15L 4AHWA 3KYYA 2AUSB
chains in the Genus database with same CATH topology
2CKCA 5K2ME 3SS2A 2XJTA 5H1Sc 2B5ID 4XGHA 5MFZA 6RXNA 1T9QA 2VL6A 3KYXA 3KYWA 1RYQA 4GS7D 2JI1A 5MF6A 1T9OA 3PZAA 1YUZA 2C6BA 3PKJA 2KKDA 1RWDA 1QYBA 2M6PA 1CAAA 1B13A 2JI2A 3RYGA 1B2OA 4E6YA 2XJRA 1R0JA 2DSXA 3J7Y1 4XXBB 5AI3A 3P2AA 5GAEc 2XJQA 2A69D 3MSUA 2L0ZA 3QVDA 1RDVA 1R0GA 3PWFA 1LKOA 1T9PA 1CADA 1VZIA 2V0EA 4JADA 1ZRPA 4ZN1B 2JI3A 2XJVA 1SMMA 2C6AA 2A6HD 1BQ8A 4JAGA 1NNQA 2Z3QB 7RXNA 1NXEA 4ME3A 5AI2A 4AI3A 1SMUA 2BE5D 4YWMA 1DVBA 1NXGA 1OWCA 2QL0A 4AHZA 5GAHc 5DM61 4LHNA 5JVH1 2XJSA 3IU3I 2ERSA 2M4YA 3LPEB 3LNLA 4K9FA 5DM71 1DX8A 1VZHA 5GAGc 1BE7A 1RDGA 5JVG1 2H12A 1IRNA 4POFA 4AR4A 1RYTA 1RB9A 2M6OA 2RDVA 1C09A 1S24A 2A6ED 1IROA 2CR8A 1ODHA 2PPTA 4B8CD 2V3BB 2GMGA 5GADc 5IY0A 5MFPA 2K2DA 1BQ9A 2NYDA 1R0FA 1E8JA 1YK4A 1IW7D 3B08B 1VZGA 8RXNA 4AI1A 4AI0A 3WWNB 2ERJA 1BRFA 2J9UB 1JYBA 1LKMA 1Z92B 4WFN1 4TVMA 3PIO1 4AHXA 3PKIA 1S30A 2PVEA 4AR3A 3PIP1 4POGA 1BFYA 4LHLA 5EIOC 2CKAA 2ZIXA 5AN9H 4AI2A 3VPBE 4RXNA 1B71A 2MS3A 3A44A 1H7VA 3NFPI 1WJVA 4YWLA 1YV1A 1IU6A 5MGNA 2XJUA 1R0IA 2PSMC 3QQCE 3RZ6A 3MPSA 1VCXA 3KYVA 1LTLA 1LKPA 5EINC 3ZG6A 5RXNA 1FHHA 4AR5A 5MLC3 3J7Z1 1R0HA 4UY81 2V0FA 2KN9A 4U671 1OWBA 2Z3RB 3WWLA 4G6BA 1YUXA 1S2ZA 2HR5A 4TPUA 1IU5A 1QCVA 4JAEA 1FHMA 4AHYA 3P8BA 2PYAA 4AR6A 3RZTA 3KYUA 4V196 1B2JA 2LCQA 1SMWA 4ZN3B 3B0AB 2M4VA 4AHWA 2XJPA 2A68D 2O5JD 1YK5A 2AYJA 2PVXA 3KYYA 4JAFA 3K35A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SS2 A;  6RXN A;  1T9Q A;  2VL6 A;  3KYX A;  3KYW A;  1T9O A;  3PZA A;  1YUZ A;  2KKD A;  1RWD A;  1QYB A;  3RYG A;  1CAA A;  1B13 A;  1B2O A;  1R0J A;  2DSX A;  5AI3 A;  3QVD A;  1RDV A;  1R0G A;  3PWF A;  1LKO A;  1T9P A;  1CAD A;  1ZRP A;  1SMM A;  1BQ8 A;  1NNQ A;  7RXN A;  4ME3 A;  5AI2 A;  1SMU A;  4YWM A;  1DVB A;  2QL0 A;  2M4Y A;  4K9F A;  1DX8 A;  1BE7 A;  1RDG A;  1IRN A;  4POF A;  4AR4 A;  1RYT A;  1RB9 A;  2RDV A;  1C09 A;  1S24 A;  1IRO A;  2V3B B;  2GMG A;  5IY0 A;  2K2D A;  1BQ9 A;  1R0F A;  1E8J A;  1YK4 A;  8RXN A;  1BRF A;  1JYB A;  1LKM A;  1S30 A;  2PVE A;  4AR3 A;  4POG A;  1BFY A;  4RXN A;  1B71 A;  2MS3 A;  3A44 A;  1H7V A;  4YWL A;  1YV1 A;  1IU6 A;  1R0I A;  3RZ6 A;  3MPS A;  1VCX A;  3KYV A;  1LTL A;  1LKP A;  5RXN A;  1FHH A;  4AR5 A;  1R0H A;  2KN9 A;  1YUX A;  1S2Z A;  2HR5 A;  4TPU A;  1IU5 A;  1QCV A;  1FHM A;  2PYA A;  4AR6 A;  3RZT A;  3KYU A;  1B2J A;  2LCQ A;  1SMW A;  1YK5 A;  2PVX A;  3KYY A; 
#chains in the Genus database with same CATH topology
 3GTG L;  3HJY B;  2CKC A;  2XJT A;  6RXN A;  3GTM L;  2VL6 A;  3HOY L;  1RYQ A;  3LWQ B;  3PKJ A;  3RYG A;  2M6P A;  1B13 A;  2JI2 A;  3PO2 L;  4E6Y A;  3H97 A;  3CQZ L;  2DSX A;  3J7Y 1;  3GTQ L;  3I4N L;  3RZO L;  2HVY C;  4C3J L;  4JAD A;  4A3E L;  3S1Q L;  1ZRP A;  4ZN1 B;  2JI3 A;  1BQ8 A;  3FKI L;  1NNQ A;  3HJW B;  1TWG L;  3LWV B;  1DVB A;  2QL0 A;  5DM6 1;  1PFU A;  1DX8 A;  3S1N L;  4AR4 A;  1RYT A;  2M6O A;  2RDV A;  3M3Y L;  2CR8 A;  1ODH A;  2PPT A;  4B8C D;  2V3B B;  5IY0 A;  3GTO L;  1IW7 D;  3B08 B;  4AI1 A;  1BRF A;  1S30 A;  3PIP 1;  2NVQ L;  2CKA A;  1B71 A;  3HOV L;  4C2M 1;  1H7V A;  3NFP I;  1R9T L;  1YV1 A;  4Y7N L;  2XJU A;  3QQC E;  3RZ6 A;  2R92 L;  3KYV A;  3J7Z 1;  3JR7 A;  2Z3R B;  1YUX A;  2HR5 A;  4AHY A;  3P8B A;  3S14 L;  3S1R L;  2Y0S P;  3HKZ P;  2A68 D;  1TWH L;  2O5J D;  2PMZ P;  4JAF A;  5M5W L;  5K2M E;  3SS2 A;  5H1S c;  2B5I D;  5MFZ A;  4WFN 1;  4GS7 D;  3KYW A;  5M5X L;  3PZA A;  2YU9 L;  4Y52 L;  1QYB A;  2E2H L;  1B2O A;  5IP9 L;  2B63 L;  4A3C L;  3LWP B;  5AI3 A;  3P2A A;  3MSU A;  1I3Q L;  4A3B L;  1T9P A;  1VZI A;  2WB1 P;  2V0E A;  1SMM A;  2C6A A;  2A6H D;  4JAG A;  3HAX C;  4ME3 A;  2BE5 D;  4AHZ A;  1NXG A;  5GAH c;  5JVH 1;  2XJS A;  2ERS A;  1QQT A;  3LNL A;  1VZH A;  5JVG 1;  3S2H L;  5C4J L;  2A6E D;  3M4O L;  1IRO A;  1PZX A;  4A3J L;  3H3V M;  1E8J A;  1YK4 A;  4AI0 A;  2R93 L;  1Z92 B;  5C4X L;  3PKI A;  2NVT L;  4LHL A;  1TWA L;  3S2D L;  3VPB E;  3A44 A;  5IYC L;  5MGN A;  4A3M L;  3MPS A;  1VCX A;  5EIN C;  1LKP A;  3ZG6 A;  4UY8 1;  3GTL L;  2V0F A;  2KN9 A;  4U67 1;  1OWB A;  3WWL A;  4BBS L;  4V19 6;  3H99 A;  1B2J A;  3B0A B;  5FJ8 L;  2XJP A;  4A3L L;  1YK5 A;  5C3E L;  4A3F L;  3K35 A;  1TWF L;  5MF6 A;  3KYX A;  1T9O A;  2WAQ P;  3PL5 A;  1RWD A;  1Y1V L;  3S16 L;  1CAA A;  2XJR A;  1R0J A;  2E2J L;  5GAE c;  2L0Z A;  3K7A L;  1R0G A;  3RZD L;  3PWF A;  4BBR L;  1CAD A;  2XJV A;  3HOZ L;  4A93 L;  2Z3Q B;  7RXN A;  1NXE A;  5AI2 A;  4YWM A;  3GTJ L;  3IU3 I;  2M4Y A;  4K9F A;  5DM7 1;  5GAG c;  1RDG A;  3H9C A;  3MQK B;  2H12 A;  1IRN A;  3I4M L;  4C3I L;  1C09 A;  1S24 A;  1PFW A;  1TWC L;  5MFP A;  1BQ9 A;  1R0F A;  5M3F L;  1VZG A;  8RXN A;  3WWN B;  1SFO L;  4TVM A;  3PIO 1;  4AHX A;  5IYB L;  4POG A;  2PVE A;  2JA7 L;  2R7Z L;  5AN9 H;  4AI2 A;  4RXN A;  1K83 L;  2MS3 A;  3LWO B;  2NVY L;  1IU6 A;  1R0I A;  2NVX L;  1LTL A;  1FHH A;  1I6H L;  5MLC 3;  1R0H A;  4A3G L;  4A3K L;  1S2Z A;  4TPU A;  1IU5 A;  2PYA A;  4AR6 A;  3RZT A;  1WCM L;  1SMW A;  2JA6 L;  2M4V A;  4C3H L;  2AYJ A;  2PVX A;  3LWR B;  4XXB B;  5IP7 L;  5FLM L;  5M3M L;  4XGH A;  2VUM L;  1T9Q A;  1PFY A;  2JI1 A;  1YUZ A;  2AQC A;  2C6B A;  2KKD A;  1F4L A;  2EY4 E;  4X6A L;  2XJQ A;  2A69 D;  3GTP L;  3QVD A;  1RDV A;  1LKO A;  3H0G L;  3HOX L;  4QIW P;  3FDJ A;  4AI3 A;  1SMU A;  3HOU L;  5C44 L;  1OWC A;  4LHN A;  3LPE B;  5M5Y L;  2RFK B;  1BE7 A;  4POF A;  1RB9 A;  2JA8 L;  4A3D L;  2E2I L;  2GMG A;  5GAD c;  2K2D A;  2NYD A;  3S17 L;  2APO B;  4BXX L;  2ERJ A;  2J9U B;  1PFV A;  1JYB A;  1LKM A;  3H9B A;  4AR3 A;  4AYB P;  3HOW L;  1BFY A;  5EIO C;  1I50 L;  2ZIX A;  1Y1W L;  1WJV A;  4YWL A;  2PSM C;  3PO3 L;  3GTK L;  5RXN A;  4AR5 A;  3S1M L;  4G6B A;  4BY7 L;  1P7P A;  1QCV A;  4JAE A;  1FHM A;  3KYU A;  2LCQ A;  4A3I L;  4ZN3 B;  2JA5 L;  5IYD L;  4BY1 L;  3S15 L;  4AHW A;  3KYY A;  2AUS B; 
#chains in the Genus database with same CATH homology
 2CKC A;  5K2M E;  3SS2 A;  2XJT A;  5H1S c;  2B5I D;  4XGH A;  5MFZ A;  6RXN A;  1T9Q A;  2VL6 A;  3KYX A;  3KYW A;  1RYQ A;  4GS7 D;  2JI1 A;  5MF6 A;  1T9O A;  3PZA A;  1YUZ A;  2C6B A;  3PKJ A;  2KKD A;  1RWD A;  1QYB A;  2M6P A;  1CAA A;  1B13 A;  2JI2 A;  3RYG A;  1B2O A;  4E6Y A;  2XJR A;  1R0J A;  2DSX A;  3J7Y 1;  4XXB B;  5AI3 A;  3P2A A;  5GAE c;  2XJQ A;  2A69 D;  3MSU A;  2L0Z A;  3QVD A;  1RDV A;  1R0G A;  3PWF A;  1LKO A;  1T9P A;  1CAD A;  1VZI A;  2V0E A;  4JAD A;  1ZRP A;  4ZN1 B;  2JI3 A;  2XJV A;  1SMM A;  2C6A A;  2A6H D;  1BQ8 A;  4JAG A;  1NNQ A;  2Z3Q B;  7RXN A;  1NXE A;  4ME3 A;  5AI2 A;  4AI3 A;  1SMU A;  2BE5 D;  4YWM A;  1DVB A;  1NXG A;  1OWC A;  2QL0 A;  4AHZ A;  5GAH c;  5DM6 1;  4LHN A;  5JVH 1;  2XJS A;  3IU3 I;  2ERS A;  2M4Y A;  3LPE B;  3LNL A;  4K9F A;  5DM7 1;  1DX8 A;  1VZH A;  5GAG c;  1BE7 A;  1RDG A;  5JVG 1;  2H12 A;  1IRN A;  4POF A;  4AR4 A;  1RYT A;  1RB9 A;  2M6O A;  2RDV A;  1C09 A;  1S24 A;  2A6E D;  1IRO A;  2CR8 A;  1ODH A;  2PPT A;  4B8C D;  2V3B B;  2GMG A;  5GAD c;  5IY0 A;  5MFP A;  2K2D A;  1BQ9 A;  2NYD A;  1R0F A;  1E8J A;  1YK4 A;  1IW7 D;  3B08 B;  1VZG A;  8RXN A;  4AI1 A;  4AI0 A;  3WWN B;  2ERJ A;  1BRF A;  2J9U B;  1JYB A;  1LKM A;  1Z92 B;  4WFN 1;  4TVM A;  3PIO 1;  4AHX A;  3PKI A;  1S30 A;  2PVE A;  4AR3 A;  3PIP 1;  4POG A;  1BFY A;  4LHL A;  5EIO C;  2CKA A;  2ZIX A;  5AN9 H;  4AI2 A;  3VPB E;  4RXN A;  1B71 A;  2MS3 A;  3A44 A;  1H7V A;  3NFP I;  1WJV A;  4YWL A;  1YV1 A;  1IU6 A;  5MGN A;  2XJU A;  1R0I A;  2PSM C;  3QQC E;  3RZ6 A;  3MPS A;  1VCX A;  3KYV A;  1LTL A;  1LKP A;  5EIN C;  3ZG6 A;  5RXN A;  1FHH A;  4AR5 A;  5MLC 3;  3J7Z 1;  1R0H A;  4UY8 1;  2V0F A;  2KN9 A;  4U67 1;  1OWB A;  2Z3R B;  3WWL A;  4G6B A;  1YUX A;  1S2Z A;  2HR5 A;  4TPU A;  1IU5 A;  1QCV A;  4JAE A;  1FHM A;  4AHY A;  3P8B A;  2PYA A;  4AR6 A;  3RZT A;  3KYU A;  4V19 6;  1B2J A;  2LCQ A;  1SMW A;  4ZN3 B;  3B0A B;  2M4V A;  4AHW A;  2XJP A;  2A68 D;  2O5J D;  1YK5 A;  2AYJ A;  2PVX A;  3KYY A;  4JAF A;  3K35 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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