2PXBA

Variant 2 of ribonucleoprotein core of the e. coli signal recognition particle
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
102
structure length
69
Chain Sequence
FDLNDFLEQKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein/rna
molecule keywords 4.5 S RNA
publication title A General Strategy to Solve the Phase Problem in RNA Crystallography.
pubmed doi rcsb
source organism Escherichia coli
total genus 21
structure length 69
sequence length 102
ec nomenclature
pdb deposition date 2007-05-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.30 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) Signal recognition particle, SRP54 subunit, M-domain 2pxbA00
2JQEA 1QB2A 3DM5A 1DULA 3KL4A 2PXTA 2PXBA 1MFQC 2PXPA 3NDBB 2PXUA 2PXQA 2XXAA 3LQXA 1HQ1A 5GAHi 2PXLA 2PXKA 2PXVA 2V3CC 5GAGi 2PXEA 2FFHA 2PXFA 1QZXA 2PXDA
chains in the Genus database with same CATH superfamily
1UTXA 4Z5HA 1QB2A 4X4CA 1R69A 3OP9A 2PPXA 1LCDA 1RZRA 2LYPA 1EFAA 2PUDA 5DTQA 2XIUA 3A9YA 2WIUB 2FJRA 2LYKA 3IVPA 2PXVA 4FBIA 3A9ZA 2PXTA 4IWRA 1Y7YA 3SX0A 5DRYA 3GZDC 2PUCA 3NDBB 4NDWA 4X4DA 4YARA 3QYXA 2BNMA 3G7DA 2IU7A 3NXHA 2FFHA 3OQMA 1ZZBA 4X4BA 1Y9QA 2O38A 3BD1A 1AU7A 1MFQC 3F52A 2O49A 2LNMA 2HFZA 2HINA 4ER6A 4J1XA 2GRLA 4EKGA 2IVQA 1POUA 3JXBC 4OBMA 4HRAA 2L1PA 2PXEA 3TEPA 4MCTA 1PRAA 2OFYA 1IC8A 2L8NA 1LLIA 2BNOA 3U3WA 3D1NI 4ER0A 5JUWA 4JCYA 1DULA 4PU8A 4MCXA 3LISA 3HZIB 2XXQA 3CECA 1B0NA 1R63A 2EWTA 2V3CC 1DW9A 5DT2A 2XJ3A 1RZSA 4X4GA 3PE5A 1JH9A 4FN3A 4J1WA 2GRMA 2MQKA 3TFLA 1UXDA 1RPEL 1QP7A 3PXPA 1O4XA 4ER7A 2XCJA 1WH8A 1WIZA 4IVZA 2J7WA 2B5AA 2KPJA 3LFPA 4I6UA 1QP0A 3MEJA 3KJXA 2J7UA 2M4HA 4Q2JA 1RZRD 1NW3A 3ZPXA 2MXDA 5DRTA 1HQ1A 1PNRA 1XWRA 1PERL 2O4AA 2LYQA 2PUFA 1ZAYA 2XI8A 1E3OC 2JCGA 3VK0A 4Z5CA 1VPWA 2LLVA 3F51A 1X2LA 4X4HA 1ZUGA 3NZLA 1PRVA 3QOWA 3LQXA 2MEZA 2PXKA 1ZS4A 3R1FA 4IA8A 2LYRA 1YSEA 2AXVA 3ZHIA 3QQ6A 3OQNA 3JXDL 2PUAA 2JVLA 1X57A 2ICPA 3FYAA 5DTRA 4DE9A 3KXAA 4Z58A 1OSLA 3OMTA 1NEQA 2CROA 4Z59A 3DNVB 2HCSA 2IVBA 4DE8A 2KEKA 1CQTA 5K98B 4I8TA 2IUOA 3GUUA 1WETA 2BJCA 2PXPA 2CSFA 1GT0C 2HCNA 4PU4C 2IV1A 1LQCA 2PUGA 2A6CA 3DM5A 4X4EA 2VEOA 3KZ3A 2IVGA 1BDHA 2PIJA 3FMYA 1ADRA 4EZIA 3SR4A 3B7HA 5GAHi 3CLCA 2KEIA 1ZZ6A 4GQMA 3GN5B 1OCTC 1QQAA 4X4FA 2H8RA 3TELA 3ME5A 4EKIA 3MLFA 2D5VA 3CROL 4GHJA 1QP4A 1ZZ7A 3GBFA 2LYLA 2PE5A 5A7LA 4YG7B 5DSXA 2KEJA 1QZXA 3GN5A 2XXPA 3H5TA 1NERA 1ZVVA 1LMB3 3QF3A 2LYSA 2HSGA 3R09A 2R1JL 3A9XA 2PUBA 3TRBA 3OKZA 2PXLA 3QWGA 3GZCA 4OB4A 1RIOA 1ZPQA 2AXUA 4YG4A 2PXFA 1WH6A 3QFIA 2KZ8A 2YBDA 1ZZ9A 2AWIA 2LCVA 2GZUA 4I6RA 2EF8A 3OQOA 1QPZA 3BDNA 2PUEA 1ZZCA 3VWSA 3S8QA 4ER3A 1BDIA 2PXUA 1U2ZA 2PXQA 2XXAA 3G0TA 1UXCA 2L49A 2OR1L 1JFSA 2AW6A 2ODRD 1ZZ8A 3KL4A 3ZKCA 1L1MA 4JQDA 4JCXA 4YG1A 3GZDA 4Y42A 3ZHMA 1JWLA 5GAGi 2BNNA 3SCGA 2AUWA 3SCHA 4Z5DA 4PU3C 3M9LA 1S7EA 2PXBA 3SCFA 4PU7A 3NROA 4YBAA 1CJGA 4I6TA 2XSDC 4F8DA 3QOXA 3BS3A 2LLWA 2ICTA 1DWKA 3F6WA 3UFDA 1HF0A 2LYJA 2AXZA 3EUSA 1PRUA 3L1PA 2JQEA 5DTMA 4ER5A 3G5GA 2EBYA 4EK9A 4X4IA 1JFTA 1LCCA 2WUSR 3JXCL 2R63A 1SQ8A 4O8BA 4EQZA 3OWQA 3FYMA 3RZZA 3UWPA 1QQBA 4WVLA 2PXDA 3O9XA
chains in the Genus database with same CATH topology
2JQEA 1QB2A 3DM5A 1DULA 3KL4A 2PXTA 2PXBA 1MFQC 2PXPA 3NDBB 2PXUA 2PXQA 2XXAA 3LQXA 1HQ1A 5GAHi 2PXLA 2PXKA 2PXVA 2V3CC 5GAGi 2PXEA 2FFHA 2PXFA 1QZXA 2PXDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JQE A;  1QB2 A;  3DM5 A;  1DUL A;  3KL4 A;  2PXT A;  2PXB A;  1MFQ C;  2PXP A;  3NDB B;  2PXU A;  2PXQ A;  2XXA A;  3LQX A;  1HQ1 A;  5GAH i;  2PXL A;  2PXK A;  2PXV A;  2V3C C;  5GAG i;  2PXE A;  2FFH A;  2PXF A;  1QZX A;  2PXD A; 
#chains in the Genus database with same CATH topology
 1UTX A;  4Z5H A;  1QB2 A;  4X4C A;  1R69 A;  3OP9 A;  2PPX A;  1LCD A;  1RZR A;  2LYP A;  1EFA A;  2PUD A;  5DTQ A;  2XIU A;  3A9Y A;  2WIU B;  2FJR A;  2LYK A;  3IVP A;  2PXV A;  4FBI A;  3A9Z A;  2PXT A;  4IWR A;  1Y7Y A;  3SX0 A;  5DRY A;  3GZD C;  2PUC A;  3NDB B;  4NDW A;  4X4D A;  4YAR A;  3QYX A;  2BNM A;  3G7D A;  2IU7 A;  3NXH A;  2FFH A;  3OQM A;  1ZZB A;  4X4B A;  1Y9Q A;  2O38 A;  3BD1 A;  1AU7 A;  1MFQ C;  3F52 A;  2O49 A;  2LNM A;  2HFZ A;  2HIN A;  4ER6 A;  4J1X A;  2GRL A;  4EKG A;  2IVQ A;  1POU A;  3JXB C;  4OBM A;  4HRA A;  2L1P A;  2PXE A;  3TEP A;  4MCT A;  1PRA A;  2OFY A;  1IC8 A;  2L8N A;  1LLI A;  2BNO A;  3U3W A;  3D1N I;  4ER0 A;  5JUW A;  4JCY A;  1DUL A;  4PU8 A;  4MCX A;  3LIS A;  3HZI B;  2XXQ A;  3CEC A;  1B0N A;  1R63 A;  2EWT A;  2V3C C;  1DW9 A;  5DT2 A;  2XJ3 A;  1RZS A;  4X4G A;  3PE5 A;  1JH9 A;  4FN3 A;  4J1W A;  2GRM A;  2MQK A;  3TFL A;  1UXD A;  1RPE L;  1QP7 A;  3PXP A;  1O4X A;  4ER7 A;  2XCJ A;  1WH8 A;  1WIZ A;  4IVZ A;  2J7W A;  2B5A A;  2KPJ A;  3LFP A;  4I6U A;  1QP0 A;  3MEJ A;  3KJX A;  2J7U A;  2M4H A;  4Q2J A;  1RZR D;  1NW3 A;  3ZPX A;  2MXD A;  5DRT A;  1HQ1 A;  1PNR A;  1XWR A;  1PER L;  2O4A A;  2LYQ A;  2PUF A;  1ZAY A;  2XI8 A;  1E3O C;  2JCG A;  3VK0 A;  4Z5C A;  1VPW A;  2LLV A;  3F51 A;  1X2L A;  4X4H A;  1ZUG A;  3NZL A;  1PRV A;  3QOW A;  3LQX A;  2MEZ A;  2PXK A;  1ZS4 A;  3R1F A;  4IA8 A;  2LYR A;  1YSE A;  2AXV A;  3ZHI A;  3QQ6 A;  3OQN A;  3JXD L;  2PUA A;  2JVL A;  1X57 A;  2ICP A;  3FYA A;  5DTR A;  4DE9 A;  3KXA A;  4Z58 A;  1OSL A;  3OMT A;  1NEQ A;  2CRO A;  4Z59 A;  3DNV B;  2HCS A;  2IVB A;  4DE8 A;  2KEK A;  1CQT A;  5K98 B;  4I8T A;  2IUO A;  3GUU A;  1WET A;  2BJC A;  2PXP A;  2CSF A;  1GT0 C;  2HCN A;  4PU4 C;  2IV1 A;  1LQC A;  2PUG A;  2A6C A;  3DM5 A;  4X4E A;  2VEO A;  3KZ3 A;  2IVG A;  1BDH A;  2PIJ A;  3FMY A;  1ADR A;  4EZI A;  3SR4 A;  3B7H A;  5GAH i;  3CLC A;  2KEI A;  1ZZ6 A;  4GQM A;  3GN5 B;  1OCT C;  1QQA A;  4X4F A;  2H8R A;  3TEL A;  3ME5 A;  4EKI A;  3MLF A;  2D5V A;  3CRO L;  4GHJ A;  1QP4 A;  1ZZ7 A;  3GBF A;  2LYL A;  2PE5 A;  5A7L A;  4YG7 B;  5DSX A;  2KEJ A;  1QZX A;  3GN5 A;  2XXP A;  3H5T A;  1NER A;  1ZVV A;  1LMB 3;  3QF3 A;  2LYS A;  2HSG A;  3R09 A;  2R1J L;  3A9X A;  2PUB A;  3TRB A;  3OKZ A;  2PXL A;  3QWG A;  3GZC A;  4OB4 A;  1RIO A;  1ZPQ A;  2AXU A;  4YG4 A;  2PXF A;  1WH6 A;  3QFI A;  2KZ8 A;  2YBD A;  1ZZ9 A;  2AWI A;  2LCV A;  2GZU A;  4I6R A;  2EF8 A;  3OQO A;  1QPZ A;  3BDN A;  2PUE A;  1ZZC A;  3VWS A;  3S8Q A;  4ER3 A;  1BDI A;  2PXU A;  1U2Z A;  2PXQ A;  2XXA A;  3G0T A;  1UXC A;  2L49 A;  2OR1 L;  1JFS A;  2AW6 A;  2ODR D;  1ZZ8 A;  3KL4 A;  3ZKC A;  1L1M A;  4JQD A;  4JCX A;  4YG1 A;  3GZD A;  4Y42 A;  3ZHM A;  1JWL A;  5GAG i;  2BNN A;  3SCG A;  2AUW A;  3SCH A;  4Z5D A;  4PU3 C;  3M9L A;  1S7E A;  2PXB A;  3SCF A;  4PU7 A;  3NRO A;  4YBA A;  1CJG A;  4I6T A;  2XSD C;  4F8D A;  3QOX A;  3BS3 A;  2LLW A;  2ICT A;  1DWK A;  3F6W A;  3UFD A;  1HF0 A;  2LYJ A;  2AXZ A;  3EUS A;  1PRU A;  3L1P A;  2JQE A;  5DTM A;  4ER5 A;  3G5G A;  2EBY A;  4EK9 A;  4X4I A;  1JFT A;  1LCC A;  2WUS R;  3JXC L;  2R63 A;  1SQ8 A;  4O8B A;  4EQZ A;  3OWQ A;  3FYM A;  3RZZ A;  3UWP A;  1QQB A;  4WVL A;  2PXD A;  3O9X A; 
#chains in the Genus database with same CATH homology
 2JQE A;  1QB2 A;  3DM5 A;  1DUL A;  3KL4 A;  2PXT A;  2PXB A;  1MFQ C;  2PXP A;  3NDB B;  2PXU A;  2PXQ A;  2XXA A;  3LQX A;  1HQ1 A;  5GAH i;  2PXL A;  2PXK A;  2PXV A;  2V3C C;  5GAG i;  2PXE A;  2FFH A;  2PXF A;  1QZX A;  2PXD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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