2PXBA

Variant 2 of ribonucleoprotein core of the e. coli signal recognition particle
Total Genus 21
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
102
structure length
69
Chain Sequence
FDLNDFLEQKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Signaling protein/rna
molecule keywords 4.5 S RNA
publication title A General Strategy to Solve the Phase Problem in RNA Crystallography.
pubmed doi rcsb
source organism Escherichia coli
total genus 21
structure length 69
sequence length 102
ec nomenclature
pdb deposition date 2007-05-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.30 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) Signal recognition particle, SRP54 subunit, M-domain 2pxbA00
1QZXA 2V3CC 2PXTA 3DM5A 1DULA 2PXPA 2PXFA 3KL4A 1MFQC 2XXAA 2PXKA 2PXUA 2PXBA 2PXEA 5GAHi 3NDBB 5GAGi 2JQEA 1QB2A 2PXLA 2PXDA 2PXQA 2FFHA 1HQ1A 3LQXA 2PXVA
chains in the Genus database with same CATH superfamily
3ZKCA 4YG1A 2IUOA 2IVQA 1HF0A 1QP7A 3KL4A 4YG4A 3CROL 2PUBA 1ZUGA 1PERL 2J7UA 4X4IA 4OB4A 1ZZ8A 2O4AA 2PUDA 3QWGA 4EKGA 3QYXA 3CLCA 2MXDA 4I8TA 5GAGi 2LYLA 3G7DA 2AXZA 2PXQA 2J7WA 2LYRA 4EQZA 1X2LA 2WIUB 1ZZCA 2XI8A 4I6TA 3F52A 2PE5A 2PXKA 3BDNA 2LYPA 1ZZBA 2PXEA 1X57A 2EWTA 2KPJA 5DTRA 2R1JL 3LISA 1PRVA 4I6RA 4MCXA 4ER0A 2A6CA 2PUCA 3A9YA 3SR4A 3NROA 3H5TA 2HINA 1QQAA 3PXPA 3G0TA 3FMYA 1HQ1A 5DRYA 5DT2A 5DTMA 1POUA 4MCTA 3O9XA 3BS3A 2AW6A 1L1MA 2D5VA 1BDHA 1PRAA 1UXCA 2XIUA 3RZZA 4JQDA 3G5GA 2XXQA 2BJCA 1LLIA 2AXUA 2FJRA 4X4CA 2PXLA 4DE8A 2V3CC 4J1WA 3IVPA 1ZVVA 2JCGA 2JVLA 1QP0A 3M9LA 3OWQA 1YSEA 1LMB3 2HCNA 2O38A 3SX0A 2ICPA 3U3WA 4J1XA 2MQKA 2LLWA 2OFYA 1QB2A 1NW3A 4X4HA 1ZZ6A 4I6UA 4X4EA 4OBMA 1QP4A 2LLVA 4X4BA 4EK9A 2XXAA 2L8NA 3ZHIA 1U2ZA 5A7LA 2IVGA 3OQOA 3NXHA 5DSXA 1UXDA 2LCVA 3R09A 3NDBB 1VPWA 2IV1A 3TFLA 4Z5DA 1AU7A 2L49A 1DULA 2PXFA 2PUGA 2CROA 1WH8A 4DE9A 5K98B 2LYQA 2KEIA 1R63A 3TEPA 3MEJA 4IVZA 3TELA 1PNRA 1ZZ7A 4ER7A 1LCDA 2PUEA 2KEJA 4PU4C 2AXVA 2KEKA 4GHJA 3OQNA 1ZZ9A 3GBFA 3GZDA 2IU7A 5GAHi 3FYMA 1ADRA 4X4GA 1LCCA 3UFDA 3A9ZA 1DW9A 2FFHA 2GRLA 2PXTA 4Q2JA 4Z58A 1XWRA 2PXPA 2PIJA 1B0NA 3MLFA 4ER6A 2XJ3A 3R1FA 2HCSA 1JWLA 3SCFA 1RZSA 4JCYA 3OKZA 2ICTA 2GRMA 4IA8A 2PXVA 4FN3A 2M4HA 3FYAA 2KZ8A 1ZS4A 1WIZA 2R63A 2LNMA 2WUSR 1RPEL 2PUFA 4PU3C 4HRAA 2PXBA 4YARA 4EKIA 4NDWA 3D1NI 2IVBA 3ZPXA 1BDIA 2PXDA 4X4DA 2VEOA 2AUWA 1GT0C 4O8BA 1CQTA 3GUUA 3PE5A 1IC8A 2EF8A 3KXAA 3ME5A 1WH6A 1PRUA 1ZPQA 4PU7A 3EUSA 4Y42A 3SCGA 4JCXA 2JQEA 3CECA 3KJXA 3QOXA 3KZ3A 4GQMA 5JUWA 2H8RA 3JXBC 3QQ6A 3A9XA 2XXPA 3HZIB 3QFIA 3TRBA 3GN5B 1QPZA 1RIOA 3NZLA 3ZHMA 3OP9A 4YG7B 1NEQA 3VWSA 1DWKA 1QZXA 1LQCA 1E3OC 1S7EA 3LFPA 2PXUA 4FBIA 3B7HA 4PU8A 2GZUA 3QOWA 2L1PA 1SQ8A 3JXCL 4ER3A 1Y7YA 2HFZA 1Y9QA 2LYJA 3F51A 1OSLA 1QQBA 3DM5A 3JXDL 1WETA 1MFQC 1CJGA 4Z59A 2B5AA 3QF3A 1NERA 3F6WA 2AWIA 3BD1A 1RZRD 2PUAA 3L1PA 4YBAA 4Z5CA 5DRTA 3UWPA 3LQXA 2MEZA 1EFAA 2XCJA 2HSGA 4ER5A 1RZRA 2XSDC 4WVLA 2BNNA 3S8QA 1ZAYA 2PPXA 1O4XA 3SCHA 4EZIA 1JFTA 2LYSA 4F8DA 1R69A 4Z5HA 3OMTA 2YBDA 1UTXA 2O49A 2CSFA 4IWRA 3VK0A 2LYKA 1JH9A 3GZCA 3DNVB 1OCTC 2EBYA 2BNMA 2OR1L 3GN5A 3GZDC 2BNOA 4X4FA 3OQMA 1JFSA 5DTQA 2ODRD
chains in the Genus database with same CATH topology
1QZXA 2V3CC 2PXTA 3DM5A 1DULA 2PXPA 2PXFA 3KL4A 1MFQC 2XXAA 2PXKA 2PXUA 2PXBA 2PXEA 5GAHi 3NDBB 5GAGi 2JQEA 1QB2A 2PXLA 2PXDA 2PXQA 2FFHA 1HQ1A 3LQXA 2PXVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QZX A;  2V3C C;  2PXT A;  3DM5 A;  1DUL A;  2PXP A;  2PXF A;  3KL4 A;  1MFQ C;  2XXA A;  2PXK A;  2PXU A;  2PXB A;  2PXE A;  5GAH i;  3NDB B;  5GAG i;  2JQE A;  1QB2 A;  2PXL A;  2PXD A;  2PXQ A;  2FFH A;  1HQ1 A;  3LQX A;  2PXV A; 
#chains in the Genus database with same CATH topology
 3ZKC A;  4YG1 A;  2IUO A;  2IVQ A;  1HF0 A;  1QP7 A;  3KL4 A;  4YG4 A;  3CRO L;  2PUB A;  1ZUG A;  1PER L;  2J7U A;  4X4I A;  4OB4 A;  1ZZ8 A;  2O4A A;  2PUD A;  3QWG A;  4EKG A;  3QYX A;  3CLC A;  2MXD A;  4I8T A;  5GAG i;  2LYL A;  3G7D A;  2AXZ A;  2PXQ A;  2J7W A;  2LYR A;  4EQZ A;  1X2L A;  2WIU B;  1ZZC A;  2XI8 A;  4I6T A;  3F52 A;  2PE5 A;  2PXK A;  3BDN A;  2LYP A;  1ZZB A;  2PXE A;  1X57 A;  2EWT A;  2KPJ A;  5DTR A;  2R1J L;  3LIS A;  1PRV A;  4I6R A;  4MCX A;  4ER0 A;  2A6C A;  2PUC A;  3A9Y A;  3SR4 A;  3NRO A;  3H5T A;  2HIN A;  1QQA A;  3PXP A;  3G0T A;  3FMY A;  1HQ1 A;  5DRY A;  5DT2 A;  5DTM A;  1POU A;  4MCT A;  3O9X A;  3BS3 A;  2AW6 A;  1L1M A;  2D5V A;  1BDH A;  1PRA A;  1UXC A;  2XIU A;  3RZZ A;  4JQD A;  3G5G A;  2XXQ A;  2BJC A;  1LLI A;  2AXU A;  2FJR A;  4X4C A;  2PXL A;  4DE8 A;  2V3C C;  4J1W A;  3IVP A;  1ZVV A;  2JCG A;  2JVL A;  1QP0 A;  3M9L A;  3OWQ A;  1YSE A;  1LMB 3;  2HCN A;  2O38 A;  3SX0 A;  2ICP A;  3U3W A;  4J1X A;  2MQK A;  2LLW A;  2OFY A;  1QB2 A;  1NW3 A;  4X4H A;  1ZZ6 A;  4I6U A;  4X4E A;  4OBM A;  1QP4 A;  2LLV A;  4X4B A;  4EK9 A;  2XXA A;  2L8N A;  3ZHI A;  1U2Z A;  5A7L A;  2IVG A;  3OQO A;  3NXH A;  5DSX A;  1UXD A;  2LCV A;  3R09 A;  3NDB B;  1VPW A;  2IV1 A;  3TFL A;  4Z5D A;  1AU7 A;  2L49 A;  1DUL A;  2PXF A;  2PUG A;  2CRO A;  1WH8 A;  4DE9 A;  5K98 B;  2LYQ A;  2KEI A;  1R63 A;  3TEP A;  3MEJ A;  4IVZ A;  3TEL A;  1PNR A;  1ZZ7 A;  4ER7 A;  1LCD A;  2PUE A;  2KEJ A;  4PU4 C;  2AXV A;  2KEK A;  4GHJ A;  3OQN A;  1ZZ9 A;  3GBF A;  3GZD A;  2IU7 A;  5GAH i;  3FYM A;  1ADR A;  4X4G A;  1LCC A;  3UFD A;  3A9Z A;  1DW9 A;  2FFH A;  2GRL A;  2PXT A;  4Q2J A;  4Z58 A;  1XWR A;  2PXP A;  2PIJ A;  1B0N A;  3MLF A;  4ER6 A;  2XJ3 A;  3R1F A;  2HCS A;  1JWL A;  3SCF A;  1RZS A;  4JCY A;  3OKZ A;  2ICT A;  2GRM A;  4IA8 A;  2PXV A;  4FN3 A;  2M4H A;  3FYA A;  2KZ8 A;  1ZS4 A;  1WIZ A;  2R63 A;  2LNM A;  2WUS R;  1RPE L;  2PUF A;  4PU3 C;  4HRA A;  2PXB A;  4YAR A;  4EKI A;  4NDW A;  3D1N I;  2IVB A;  3ZPX A;  1BDI A;  2PXD A;  4X4D A;  2VEO A;  2AUW A;  1GT0 C;  4O8B A;  1CQT A;  3GUU A;  3PE5 A;  1IC8 A;  2EF8 A;  3KXA A;  3ME5 A;  1WH6 A;  1PRU A;  1ZPQ A;  4PU7 A;  3EUS A;  4Y42 A;  3SCG A;  4JCX A;  2JQE A;  3CEC A;  3KJX A;  3QOX A;  3KZ3 A;  4GQM A;  5JUW A;  2H8R A;  3JXB C;  3QQ6 A;  3A9X A;  2XXP A;  3HZI B;  3QFI A;  3TRB A;  3GN5 B;  1QPZ A;  1RIO A;  3NZL A;  3ZHM A;  3OP9 A;  4YG7 B;  1NEQ A;  3VWS A;  1DWK A;  1QZX A;  1LQC A;  1E3O C;  1S7E A;  3LFP A;  2PXU A;  4FBI A;  3B7H A;  4PU8 A;  2GZU A;  3QOW A;  2L1P A;  1SQ8 A;  3JXC L;  4ER3 A;  1Y7Y A;  2HFZ A;  1Y9Q A;  2LYJ A;  3F51 A;  1OSL A;  1QQB A;  3DM5 A;  3JXD L;  1WET A;  1MFQ C;  1CJG A;  4Z59 A;  2B5A A;  3QF3 A;  1NER A;  3F6W A;  2AWI A;  3BD1 A;  1RZR D;  2PUA A;  3L1P A;  4YBA A;  4Z5C A;  5DRT A;  3UWP A;  3LQX A;  2MEZ A;  1EFA A;  2XCJ A;  2HSG A;  4ER5 A;  1RZR A;  2XSD C;  4WVL A;  2BNN A;  3S8Q A;  1ZAY A;  2PPX A;  1O4X A;  3SCH A;  4EZI A;  1JFT A;  2LYS A;  4F8D A;  1R69 A;  4Z5H A;  3OMT A;  2YBD A;  1UTX A;  2O49 A;  2CSF A;  4IWR A;  3VK0 A;  2LYK A;  1JH9 A;  3GZC A;  3DNV B;  1OCT C;  2EBY A;  2BNM A;  2OR1 L;  3GN5 A;  3GZD C;  2BNO A;  4X4F A;  3OQM A;  1JFS A;  5DTQ A;  2ODR D; 
#chains in the Genus database with same CATH homology
 1QZX A;  2V3C C;  2PXT A;  3DM5 A;  1DUL A;  2PXP A;  2PXF A;  3KL4 A;  1MFQ C;  2XXA A;  2PXK A;  2PXU A;  2PXB A;  2PXE A;  5GAH i;  3NDB B;  5GAG i;  2JQE A;  1QB2 A;  2PXL A;  2PXD A;  2PXQ A;  2FFH A;  1HQ1 A;  3LQX A;  2PXV A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...