2PXFA

Variant 5 of ribonucleoprotein core of the e. coli signal recognition particle
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
102
structure length
69
Chain Sequence
FDLNDFLEQKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein/rna
molecule keywords 4.5 S RNA
publication title A General Strategy to Solve the Phase Problem in RNA Crystallography.
pubmed doi rcsb
source organism Escherichia coli
total genus 19
structure length 69
sequence length 102
ec nomenclature
pdb deposition date 2007-05-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.30 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) Signal recognition particle, SRP54 subunit, M-domain 2pxfA00
3DM5A 2PXTA 3NDBB 2PXQA 2PXFA 2XXAA 2FFHA 3LQXA 2PXVA 5GAHi 5GAGi 1MFQC 2V3CC 2PXLA 2PXKA 2PXPA 3KL4A 2PXBA 2PXEA 1QZXA 2PXDA 1HQ1A 2JQEA 1QB2A 2PXUA 1DULA
chains in the Genus database with same CATH superfamily
3HZIB 1L1MA 1ZAYA 2BJCA 2JCGA 3TELA 3QOXA 3GBFA 1DWKA 3LISA 4X4GA 2ODRD 2EBYA 2PIJA 2JVLA 2XI8A 2R1JL 2D5VA 3A9XA 3H5TA 3BS3A 1PERL 2HINA 4MCXA 1EFAA 3FYMA 5DSXA 2WIUB 4Q2JA 1ZS4A 4ER7A 4I6UA 1QQBA 2IVBA 5K98B 2LNMA 3QOWA 1WH6A 2XCJA 4X4DA 3JXDL 3MEJA 1PRUA 2YBDA 3TFLA 3SCHA 2XJ3A 3B7HA 2KEJA 4I6TA 1VPWA 2XSDC 1WIZA 3SX0A 1PRAA 1ZZ8A 3QF3A 5DRTA 3ZKCA 2A6CA 4EKIA 1BDHA 4O8BA 1WH8A 3A9YA 2IVQA 1DULA 2XXQA 4OBMA 4Z58A 3SCGA 1NW3A 5DT2A 3ZPXA 4X4HA 1RZRA 4Z5CA 4GQMA 3ZHIA 4X4FA 2PXBA 2IU7A 2WUSR 4F8DA 2XXPA 3VWSA 3NXHA 3KJXA 2XXAA 2LCVA 2PUCA 1PRVA 3R09A 3QYXA 4JCYA 2MQKA 4ER0A 3OWQA 2LYRA 2OR1L 1HQ1A 1QQAA 2PPXA 2KEIA 2PXUA 2PUEA 1WETA 2AXZA 4X4IA 4DE9A 1RIOA 2O4AA 3KXAA 2EF8A 1Y9QA 1IC8A 3RZZA 1ZZCA 3BD1A 1O4XA 2L8NA 2LYSA 3JXBC 2L49A 1LLIA 3D1NI 2H8RA 3KL4A 2O38A 5JUWA 2PE5A 2JQEA 3PXPA 4Z5HA 2PUFA 4IVZA 5DTMA 2AXVA 4I8TA 1Y7YA 4Y42A 4NDWA 1QPZA 4IA8A 4EK9A 1X2LA 3ZHMA 5A7LA 2KPJA 2HCNA 5DTRA 3O9XA 3OQNA 1OSLA 2PXVA 4FBIA 3JXCL 4WVLA 4EQZA 3OMTA 1YSEA 2PXLA 1BDIA 3R1FA 4I6RA 2PUBA 1XWRA 1R69A 4YARA 1UXCA 4J1WA 4ER3A 3G7DA 3UWPA 4YG4A 3VK0A 3KZ3A 3LQXA 1RPEL 4YG1A 3OP9A 3PE5A 4X4BA 3MLFA 3F51A 4PU8A 3QWGA 4FN3A 2PXFA 3A9ZA 3OKZA 2PUDA 3QFIA 1UTXA 2AUWA 2HCSA 1UXDA 1POUA 4JCXA 5GAHi 4PU7A 2AXUA 1LCCA 3SCFA 1QP0A 2XIUA 3G0TA 2LYJA 2GRMA 3G5GA 2FFHA 3CLCA 3ME5A 1ZUGA 2LYPA 1RZRD 3QQ6A 4EKGA 3FYAA 2BNOA 2B5AA 2AW6A 1QP4A 4OB4A 4J1XA 5GAGi 2V3CC 4X4CA 1ZVVA 2FJRA 1ADRA 2PXTA 2KEKA 1NERA 1R63A 1U2ZA 4DE8A 2HFZA 4PU3C 1B0NA 1CJGA 1ZPQA 1SQ8A 2HSGA 1MFQC 3TEPA 3NROA 2ICPA 2LLVA 1ZZBA 1JFTA 1LMB3 3GN5B 2PXDA 1QB2A 2PXKA 2PUAA 3OQMA 2GRLA 1CQTA 1LCDA 1HF0A 3GZDA 2IUOA 1QP7A 2OFYA 4JQDA 3CROL 4Z59A 4YBAA 2M4HA 4EZIA 4ER6A 2PUGA 3TRBA 3M9LA 2EWTA 2LYQA 2R63A 4MCTA 3DM5A 1X57A 2PXQA 3DNVB 1E3OC 2ICTA 3BDNA 2CROA 3F52A 3OQOA 3CECA 2L1PA 2LLWA 1DW9A 3L1PA 1JWLA 2GZUA 3EUSA 5DRYA 5DTQA 2PXPA 2LYLA 3GUUA 1QZXA 2KZ8A 2J7WA 3NDBB 2AWIA 1NEQA 2IVGA 2MXDA 4GHJA 1LQCA 4Z5DA 1JH9A 3GN5A 3UFDA 2IV1A 4X4EA 1JFSA 1ZZ7A 3U3WA 2PXEA 4ER5A 2J7UA 1GT0C 2BNMA 3SR4A 3GZCA 3FMYA 2O49A 1RZSA 2BNNA 1ZZ6A 1PNRA 4PU4C 3F6WA 3S8QA 1OCTC 2CSFA 4HRAA 4IWRA 3IVPA 2LYKA 3GZDC 3LFPA 3NZLA 4YG7B 1ZZ9A 1S7EA 2VEOA 1AU7A 2MEZA
chains in the Genus database with same CATH topology
3DM5A 2PXTA 3NDBB 2PXQA 2PXFA 2XXAA 2FFHA 3LQXA 2PXVA 5GAHi 5GAGi 1MFQC 2V3CC 2PXLA 2PXKA 2PXPA 3KL4A 2PXBA 2PXEA 1QZXA 2PXDA 1HQ1A 2JQEA 1QB2A 2PXUA 1DULA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DM5 A;  2PXT A;  3NDB B;  2PXQ A;  2PXF A;  2XXA A;  2FFH A;  3LQX A;  2PXV A;  5GAH i;  5GAG i;  1MFQ C;  2V3C C;  2PXL A;  2PXK A;  2PXP A;  3KL4 A;  2PXB A;  2PXE A;  1QZX A;  2PXD A;  1HQ1 A;  2JQE A;  1QB2 A;  2PXU A;  1DUL A; 
#chains in the Genus database with same CATH topology
 3HZI B;  1L1M A;  1ZAY A;  2BJC A;  2JCG A;  3TEL A;  3QOX A;  3GBF A;  1DWK A;  3LIS A;  4X4G A;  2ODR D;  2EBY A;  2PIJ A;  2JVL A;  2XI8 A;  2R1J L;  2D5V A;  3A9X A;  3H5T A;  3BS3 A;  1PER L;  2HIN A;  4MCX A;  1EFA A;  3FYM A;  5DSX A;  2WIU B;  4Q2J A;  1ZS4 A;  4ER7 A;  4I6U A;  1QQB A;  2IVB A;  5K98 B;  2LNM A;  3QOW A;  1WH6 A;  2XCJ A;  4X4D A;  3JXD L;  3MEJ A;  1PRU A;  2YBD A;  3TFL A;  3SCH A;  2XJ3 A;  3B7H A;  2KEJ A;  4I6T A;  1VPW A;  2XSD C;  1WIZ A;  3SX0 A;  1PRA A;  1ZZ8 A;  3QF3 A;  5DRT A;  3ZKC A;  2A6C A;  4EKI A;  1BDH A;  4O8B A;  1WH8 A;  3A9Y A;  2IVQ A;  1DUL A;  2XXQ A;  4OBM A;  4Z58 A;  3SCG A;  1NW3 A;  5DT2 A;  3ZPX A;  4X4H A;  1RZR A;  4Z5C A;  4GQM A;  3ZHI A;  4X4F A;  2PXB A;  2IU7 A;  2WUS R;  4F8D A;  2XXP A;  3VWS A;  3NXH A;  3KJX A;  2XXA A;  2LCV A;  2PUC A;  1PRV A;  3R09 A;  3QYX A;  4JCY A;  2MQK A;  4ER0 A;  3OWQ A;  2LYR A;  2OR1 L;  1HQ1 A;  1QQA A;  2PPX A;  2KEI A;  2PXU A;  2PUE A;  1WET A;  2AXZ A;  4X4I A;  4DE9 A;  1RIO A;  2O4A A;  3KXA A;  2EF8 A;  1Y9Q A;  1IC8 A;  3RZZ A;  1ZZC A;  3BD1 A;  1O4X A;  2L8N A;  2LYS A;  3JXB C;  2L49 A;  1LLI A;  3D1N I;  2H8R A;  3KL4 A;  2O38 A;  5JUW A;  2PE5 A;  2JQE A;  3PXP A;  4Z5H A;  2PUF A;  4IVZ A;  5DTM A;  2AXV A;  4I8T A;  1Y7Y A;  4Y42 A;  4NDW A;  1QPZ A;  4IA8 A;  4EK9 A;  1X2L A;  3ZHM A;  5A7L A;  2KPJ A;  2HCN A;  5DTR A;  3O9X A;  3OQN A;  1OSL A;  2PXV A;  4FBI A;  3JXC L;  4WVL A;  4EQZ A;  3OMT A;  1YSE A;  2PXL A;  1BDI A;  3R1F A;  4I6R A;  2PUB A;  1XWR A;  1R69 A;  4YAR A;  1UXC A;  4J1W A;  4ER3 A;  3G7D A;  3UWP A;  4YG4 A;  3VK0 A;  3KZ3 A;  3LQX A;  1RPE L;  4YG1 A;  3OP9 A;  3PE5 A;  4X4B A;  3MLF A;  3F51 A;  4PU8 A;  3QWG A;  4FN3 A;  2PXF A;  3A9Z A;  3OKZ A;  2PUD A;  3QFI A;  1UTX A;  2AUW A;  2HCS A;  1UXD A;  1POU A;  4JCX A;  5GAH i;  4PU7 A;  2AXU A;  1LCC A;  3SCF A;  1QP0 A;  2XIU A;  3G0T A;  2LYJ A;  2GRM A;  3G5G A;  2FFH A;  3CLC A;  3ME5 A;  1ZUG A;  2LYP A;  1RZR D;  3QQ6 A;  4EKG A;  3FYA A;  2BNO A;  2B5A A;  2AW6 A;  1QP4 A;  4OB4 A;  4J1X A;  5GAG i;  2V3C C;  4X4C A;  1ZVV A;  2FJR A;  1ADR A;  2PXT A;  2KEK A;  1NER A;  1R63 A;  1U2Z A;  4DE8 A;  2HFZ A;  4PU3 C;  1B0N A;  1CJG A;  1ZPQ A;  1SQ8 A;  2HSG A;  1MFQ C;  3TEP A;  3NRO A;  2ICP A;  2LLV A;  1ZZB A;  1JFT A;  1LMB 3;  3GN5 B;  2PXD A;  1QB2 A;  2PXK A;  2PUA A;  3OQM A;  2GRL A;  1CQT A;  1LCD A;  1HF0 A;  3GZD A;  2IUO A;  1QP7 A;  2OFY A;  4JQD A;  3CRO L;  4Z59 A;  4YBA A;  2M4H A;  4EZI A;  4ER6 A;  2PUG A;  3TRB A;  3M9L A;  2EWT A;  2LYQ A;  2R63 A;  4MCT A;  3DM5 A;  1X57 A;  2PXQ A;  3DNV B;  1E3O C;  2ICT A;  3BDN A;  2CRO A;  3F52 A;  3OQO A;  3CEC A;  2L1P A;  2LLW A;  1DW9 A;  3L1P A;  1JWL A;  2GZU A;  3EUS A;  5DRY A;  5DTQ A;  2PXP A;  2LYL A;  3GUU A;  1QZX A;  2KZ8 A;  2J7W A;  3NDB B;  2AWI A;  1NEQ A;  2IVG A;  2MXD A;  4GHJ A;  1LQC A;  4Z5D A;  1JH9 A;  3GN5 A;  3UFD A;  2IV1 A;  4X4E A;  1JFS A;  1ZZ7 A;  3U3W A;  2PXE A;  4ER5 A;  2J7U A;  1GT0 C;  2BNM A;  3SR4 A;  3GZC A;  3FMY A;  2O49 A;  1RZS A;  2BNN A;  1ZZ6 A;  1PNR A;  4PU4 C;  3F6W A;  3S8Q A;  1OCT C;  2CSF A;  4HRA A;  4IWR A;  3IVP A;  2LYK A;  3GZD C;  3LFP A;  3NZL A;  4YG7 B;  1ZZ9 A;  1S7E A;  2VEO A;  1AU7 A;  2MEZ A; 
#chains in the Genus database with same CATH homology
 3DM5 A;  2PXT A;  3NDB B;  2PXQ A;  2PXF A;  2XXA A;  2FFH A;  3LQX A;  2PXV A;  5GAH i;  5GAG i;  1MFQ C;  2V3C C;  2PXL A;  2PXK A;  2PXP A;  3KL4 A;  2PXB A;  2PXE A;  1QZX A;  2PXD A;  1HQ1 A;  2JQE A;  1QB2 A;  2PXU A;  1DUL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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