2PXFA

Variant 5 of ribonucleoprotein core of the e. coli signal recognition particle
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
102
structure length
69
Chain Sequence
FDLNDFLEQKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein/rna
molecule keywords 4.5 S RNA
publication title A General Strategy to Solve the Phase Problem in RNA Crystallography.
pubmed doi rcsb
source organism Escherichia coli
total genus 19
structure length 69
sequence length 102
ec nomenclature
pdb deposition date 2007-05-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.30 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) Signal recognition particle, SRP54 subunit, M-domain 2pxfA00
2PXDA 2JQEA 2PXBA 1QB2A 3DM5A 2V3CC 2XXAA 5GAHi 2FFHA 2PXKA 1MFQC 3LQXA 2PXFA 1QZXA 2PXVA 3NDBB 2PXQA 5GAGi 2PXPA 1HQ1A 1DULA 3KL4A 2PXUA 2PXEA 2PXTA 2PXLA
chains in the Genus database with same CATH superfamily
2GZUA 1PRVA 1EFAA 3EUSA 3RZZA 3U3WA 3F6WA 2IVQA 3ZPXA 4I6TA 3SCGA 3G0TA 1ZPQA 4X4FA 1CJGA 1IC8A 1ZAYA 1ZZ8A 4FN3A 2JCGA 2KZ8A 2XSDC 2LYKA 5GAHi 3OQMA 3OQNA 1ZZ6A 3FYAA 1S7EA 3MLFA 1HQ1A 1QPZA 3CROL 5DTRA 3F51A 1JFSA 2BNNA 5A7LA 2L49A 3ZKCA 2WUSR 1OCTC 3D1NI 4YG7B 3CLCA 2PUDA 4EQZA 2AWIA 4Q2JA 2A6CA 1RZRA 2XJ3A 2XXQA 2FFHA 3BD1A 2R63A 1QZXA 4ER5A 2PIJA 1QQAA 2GRLA 2BJCA 1AU7A 1DWKA 2AXUA 2XCJA 3OQOA 2HCSA 1ZZBA 3QOWA 4I6RA 4YARA 4EZIA 3NXHA 1ADRA 2GRMA 3UFDA 2PUBA 4MCXA 1PNRA 3R1FA 4OB4A 4OBMA 4YG1A 2ODRD 2AUWA 3OMTA 4X4CA 1QQBA 1Y7YA 1RZRD 4Z59A 4EKGA 1RZSA 1RIOA 3GUUA 2IUOA 5DSXA 3OKZA 1BDIA 1UTXA 3A9ZA 1NEQA 3F52A 3SR4A 2IVGA 3M9LA 1WH6A 2PUAA 3OWQA 1LCDA 3NZLA 1PRUA 3MEJA 1JWLA 2PXPA 2KEIA 4ER0A 5K98B 1GT0C 3BS3A 1CQTA 4FBIA 2PXDA 3O9XA 3DM5A 4X4HA 3QFIA 2OR1L 1LCCA 2XIUA 3QQ6A 3VK0A 1E3OC 2CROA 2JVLA 2MEZA 4X4DA 2KEKA 4IA8A 4ER6A 2AXVA 1ZZCA 2PE5A 2LYLA 2LYQA 4I6UA 4F8DA 3FMYA 5DRTA 3L1PA 1UXDA 5JUWA 4PU4C 4J1XA 2M4HA 1L1MA 3JXDL 2ICTA 2O4AA 1DULA 4PU8A 2O38A 4PU7A 3QOXA 4EKIA 4Z58A 2HSGA 2PXTA 3ZHMA 1LQCA 3QYXA 1ZZ9A 1QB2A 2XXAA 3JXCL 2LYPA 4I8TA 3SCFA 3TEPA 2PUGA 4ER3A 4GHJA 5GAGi 4Z5CA 1R63A 2B5AA 4MCTA 2LCVA 4NDWA 3GZDA 1XWRA 3TFLA 2AXZA 4PU3C 1MFQC 2IU7A 4X4IA 3BDNA 3IVPA 1Y9QA 3JXBC 4X4EA 2R1JL 4ER7A 1WIZA 5DT2A 1R69A 3OP9A 2FJRA 3ME5A 3A9XA 2HINA 1QP0A 2PXLA 1PRAA 3KZ3A 3KJXA 2PXFA 2EF8A 2LLVA 3QF3A 2HCNA 3QWGA 2XI8A 2AW6A 4WVLA 2BNOA 3PE5A 3KL4A 3NROA 1X57A 2KEJA 4GQMA 4IVZA 3HZIB 1NW3A 2L1PA 2L8NA 2IV1A 1WH8A 1HF0A 2BNMA 4O8BA 4Y42A 2PUEA 1QP4A 2IVBA 3GN5A 3DNVB 1X2LA 3B7HA 4DE9A 1PERL 1ZZ7A 3VWSA 5DTQA 3KXAA 1OSLA 2LNMA 2V3CC 2OFYA 1SQ8A 2VEOA 3R09A 2PXVA 3FYMA 2CSFA 2PUFA 3G7DA 3ZHIA 3H5TA 3PXPA 1LMB3 1UXCA 3SX0A 4J1WA 2ICPA 5DRYA 1ZUGA 2J7WA 3TRBA 2PUCA 2LYJA 2J7UA 2O49A 4DE8A 1JFTA 3G5GA 2LLWA 1ZVVA 2LYRA 4EK9A 2XXPA 4Z5DA 1LLIA 1DW9A 4Z5HA 4X4BA 1B0NA 3A9YA 1VPWA 2PXEA 2D5VA 2HFZA 2KPJA 2PXBA 4X4GA 2PXKA 3LQXA 1POUA 4JQDA 2H8RA 1NERA 1ZS4A 1O4XA 3NDBB 3CECA 5DTMA 4YBAA 3TELA 3GN5B 1WETA 3SCHA 2PXUA 1U2ZA 2WIUB 1QP7A 2EBYA 3LISA 1RPEL 2MQKA 2YBDA 2JQEA 4JCYA 1BDHA 2PPXA 2EWTA 4JCXA 2MXDA 3GBFA 1JH9A 4HRAA 1YSEA 3LFPA 3S8QA 4IWRA 3UWPA 2LYSA 2PXQA 3GZDC 4YG4A 3GZCA
chains in the Genus database with same CATH topology
2PXDA 2JQEA 2PXBA 1QB2A 3DM5A 2V3CC 2XXAA 5GAHi 2FFHA 2PXKA 1MFQC 3LQXA 2PXFA 1QZXA 2PXVA 3NDBB 2PXQA 5GAGi 2PXPA 1HQ1A 1DULA 3KL4A 2PXUA 2PXEA 2PXTA 2PXLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PXD A;  2JQE A;  2PXB A;  1QB2 A;  3DM5 A;  2V3C C;  2XXA A;  5GAH i;  2FFH A;  2PXK A;  1MFQ C;  3LQX A;  2PXF A;  1QZX A;  2PXV A;  3NDB B;  2PXQ A;  5GAG i;  2PXP A;  1HQ1 A;  1DUL A;  3KL4 A;  2PXU A;  2PXE A;  2PXT A;  2PXL A; 
#chains in the Genus database with same CATH topology
 2GZU A;  1PRV A;  1EFA A;  3EUS A;  3RZZ A;  3U3W A;  3F6W A;  2IVQ A;  3ZPX A;  4I6T A;  3SCG A;  3G0T A;  1ZPQ A;  4X4F A;  1CJG A;  1IC8 A;  1ZAY A;  1ZZ8 A;  4FN3 A;  2JCG A;  2KZ8 A;  2XSD C;  2LYK A;  5GAH i;  3OQM A;  3OQN A;  1ZZ6 A;  3FYA A;  1S7E A;  3MLF A;  1HQ1 A;  1QPZ A;  3CRO L;  5DTR A;  3F51 A;  1JFS A;  2BNN A;  5A7L A;  2L49 A;  3ZKC A;  2WUS R;  1OCT C;  3D1N I;  4YG7 B;  3CLC A;  2PUD A;  4EQZ A;  2AWI A;  4Q2J A;  2A6C A;  1RZR A;  2XJ3 A;  2XXQ A;  2FFH A;  3BD1 A;  2R63 A;  1QZX A;  4ER5 A;  2PIJ A;  1QQA A;  2GRL A;  2BJC A;  1AU7 A;  1DWK A;  2AXU A;  2XCJ A;  3OQO A;  2HCS A;  1ZZB A;  3QOW A;  4I6R A;  4YAR A;  4EZI A;  3NXH A;  1ADR A;  2GRM A;  3UFD A;  2PUB A;  4MCX A;  1PNR A;  3R1F A;  4OB4 A;  4OBM A;  4YG1 A;  2ODR D;  2AUW A;  3OMT A;  4X4C A;  1QQB A;  1Y7Y A;  1RZR D;  4Z59 A;  4EKG A;  1RZS A;  1RIO A;  3GUU A;  2IUO A;  5DSX A;  3OKZ A;  1BDI A;  1UTX A;  3A9Z A;  1NEQ A;  3F52 A;  3SR4 A;  2IVG A;  3M9L A;  1WH6 A;  2PUA A;  3OWQ A;  1LCD A;  3NZL A;  1PRU A;  3MEJ A;  1JWL A;  2PXP A;  2KEI A;  4ER0 A;  5K98 B;  1GT0 C;  3BS3 A;  1CQT A;  4FBI A;  2PXD A;  3O9X A;  3DM5 A;  4X4H A;  3QFI A;  2OR1 L;  1LCC A;  2XIU A;  3QQ6 A;  3VK0 A;  1E3O C;  2CRO A;  2JVL A;  2MEZ A;  4X4D A;  2KEK A;  4IA8 A;  4ER6 A;  2AXV A;  1ZZC A;  2PE5 A;  2LYL A;  2LYQ A;  4I6U A;  4F8D A;  3FMY A;  5DRT A;  3L1P A;  1UXD A;  5JUW A;  4PU4 C;  4J1X A;  2M4H A;  1L1M A;  3JXD L;  2ICT A;  2O4A A;  1DUL A;  4PU8 A;  2O38 A;  4PU7 A;  3QOX A;  4EKI A;  4Z58 A;  2HSG A;  2PXT A;  3ZHM A;  1LQC A;  3QYX A;  1ZZ9 A;  1QB2 A;  2XXA A;  3JXC L;  2LYP A;  4I8T A;  3SCF A;  3TEP A;  2PUG A;  4ER3 A;  4GHJ A;  5GAG i;  4Z5C A;  1R63 A;  2B5A A;  4MCT A;  2LCV A;  4NDW A;  3GZD A;  1XWR A;  3TFL A;  2AXZ A;  4PU3 C;  1MFQ C;  2IU7 A;  4X4I A;  3BDN A;  3IVP A;  1Y9Q A;  3JXB C;  4X4E A;  2R1J L;  4ER7 A;  1WIZ A;  5DT2 A;  1R69 A;  3OP9 A;  2FJR A;  3ME5 A;  3A9X A;  2HIN A;  1QP0 A;  2PXL A;  1PRA A;  3KZ3 A;  3KJX A;  2PXF A;  2EF8 A;  2LLV A;  3QF3 A;  2HCN A;  3QWG A;  2XI8 A;  2AW6 A;  4WVL A;  2BNO A;  3PE5 A;  3KL4 A;  3NRO A;  1X57 A;  2KEJ A;  4GQM A;  4IVZ A;  3HZI B;  1NW3 A;  2L1P A;  2L8N A;  2IV1 A;  1WH8 A;  1HF0 A;  2BNM A;  4O8B A;  4Y42 A;  2PUE A;  1QP4 A;  2IVB A;  3GN5 A;  3DNV B;  1X2L A;  3B7H A;  4DE9 A;  1PER L;  1ZZ7 A;  3VWS A;  5DTQ A;  3KXA A;  1OSL A;  2LNM A;  2V3C C;  2OFY A;  1SQ8 A;  2VEO A;  3R09 A;  2PXV A;  3FYM A;  2CSF A;  2PUF A;  3G7D A;  3ZHI A;  3H5T A;  3PXP A;  1LMB 3;  1UXC A;  3SX0 A;  4J1W A;  2ICP A;  5DRY A;  1ZUG A;  2J7W A;  3TRB A;  2PUC A;  2LYJ A;  2J7U A;  2O49 A;  4DE8 A;  1JFT A;  3G5G A;  2LLW A;  1ZVV A;  2LYR A;  4EK9 A;  2XXP A;  4Z5D A;  1LLI A;  1DW9 A;  4Z5H A;  4X4B A;  1B0N A;  3A9Y A;  1VPW A;  2PXE A;  2D5V A;  2HFZ A;  2KPJ A;  2PXB A;  4X4G A;  2PXK A;  3LQX A;  1POU A;  4JQD A;  2H8R A;  1NER A;  1ZS4 A;  1O4X A;  3NDB B;  3CEC A;  5DTM A;  4YBA A;  3TEL A;  3GN5 B;  1WET A;  3SCH A;  2PXU A;  1U2Z A;  2WIU B;  1QP7 A;  2EBY A;  3LIS A;  1RPE L;  2MQK A;  2YBD A;  2JQE A;  4JCY A;  1BDH A;  2PPX A;  2EWT A;  4JCX A;  2MXD A;  3GBF A;  1JH9 A;  4HRA A;  1YSE A;  3LFP A;  3S8Q A;  4IWR A;  3UWP A;  2LYS A;  2PXQ A;  3GZD C;  4YG4 A;  3GZC A; 
#chains in the Genus database with same CATH homology
 2PXD A;  2JQE A;  2PXB A;  1QB2 A;  3DM5 A;  2V3C C;  2XXA A;  5GAH i;  2FFH A;  2PXK A;  1MFQ C;  3LQX A;  2PXF A;  1QZX A;  2PXV A;  3NDB B;  2PXQ A;  5GAG i;  2PXP A;  1HQ1 A;  1DUL A;  3KL4 A;  2PXU A;  2PXE A;  2PXT A;  2PXL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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