2PXGA

Nmr solution structure of omla
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
118
structure length
118
Chain Sequence
MAGSGIIYKQPIYQGNLIKQNAVEQLQVGQSKQQVSALLGTPSIPDPFHAQRWDYTSTQRVDRLARTEIKNFTVFFENEQVVRWEGDYFPSQDEQLAKAAPKQFGRNLARDKKKQRGR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Outer membrane protein
publication title The solution structure of the outer membrane lipoprotein OmlA from Xanthomonas axonopodis pv. citri reveals a protein fold implicated in protein-protein interaction.
pubmed doi rcsb
source organism Xanthomonas axonopodis pv. citri
molecule tags Membrane protein
total genus 26
structure length 118
sequence length 118
ec nomenclature
pdb deposition date 2007-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04355 SmpA_OmlA SmpA / OmlA family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1450.10 Alpha Beta 2-Layer Sandwich Beta-lactamase Inhibitory Protein; Chain:B, domain 1 Beta-lactamase Inhibitory Protein; Chain:B, domain 1 2pxgA01
3C7UB 5D0QE 5D0OE 3C4PB 2PXGA 3C4OB 3D4EA 3N4IB 1S0WC 1XXMC 3GMUB 5AYWE 5EKQE 2KXXA 2KM7A 4DM5A 2G2UB 2B5RC 2YH9A 1JTGB 3C7VB 3E2LC 3E2KC 2G2WB
chains in the Genus database with same CATH superfamily
3C7UB 5D0QE 5D0OE 3C4PB 3NWAA 3NW8A 2PXGA 3C4OB 3D4EA 3N4IB 1S0WC 3NWFA 1XXMC 3GMUB 5AYWE 5EKQE 2KXXA 2KM7A 4DM5A 4L1RA 2GUMA 3NWDA 2G2UB 3FVCA 2B5RC 2YH9A 1JTGB 3C7VB 3E2LC 4HSIA 3E2KC 2G2WB
chains in the Genus database with same CATH topology
3C7UB 5D0QE 5D0OE 3C4PB 3NWAA 3NW8A 2PXGA 3C4OB 3D4EA 3N4IB 1S0WC 3NWFA 1XXMC 3GMUB 5AYWE 5EKQE 2KXXA 2KM7A 4DM5A 4L1RA 2GUMA 3NWDA 2G2UB 3FVCA 2B5RC 2YH9A 1JTGB 3C7VB 3E2LC 4HSIA 3E2KC 2G2WB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3C7U B;  5D0Q E;  5D0O E;  3C4P B;  2PXG A;  3C4O B;  3D4E A;  3N4I B;  1S0W C;  1XXM C;  3GMU B;  5AYW E;  5EKQ E;  2KXX A;  2KM7 A;  4DM5 A;  2G2U B;  2B5R C;  2YH9 A;  1JTG B;  3C7V B;  3E2L C;  3E2K C;  2G2W B; 
#chains in the Genus database with same CATH topology
 3C7U B;  5D0Q E;  5D0O E;  3C4P B;  3NWA A;  3NW8 A;  2PXG A;  3C4O B;  3D4E A;  3N4I B;  1S0W C;  3NWF A;  1XXM C;  3GMU B;  5AYW E;  5EKQ E;  2KXX A;  2KM7 A;  4DM5 A;  4L1R A;  2GUM A;  3NWD A;  2G2U B;  3FVC A;  2B5R C;  2YH9 A;  1JTG B;  3C7V B;  3E2L C;  4HSI A;  3E2K C;  2G2W B; 
#chains in the Genus database with same CATH homology
 3C7U B;  5D0Q E;  5D0O E;  3C4P B;  3NWA A;  3NW8 A;  2PXG A;  3C4O B;  3D4E A;  3N4I B;  1S0W C;  3NWF A;  1XXM C;  3GMU B;  5AYW E;  5EKQ E;  2KXX A;  2KM7 A;  4DM5 A;  4L1R A;  2GUM A;  3NWD A;  2G2U B;  3FVC A;  2B5R C;  2YH9 A;  1JTG B;  3C7V B;  3E2L C;  4HSI A;  3E2K C;  2G2W B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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