2PXPA

Variant 13 of ribonucleoprotein core of the e. coli signal recognition particle
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
102
structure length
69
Chain Sequence
FDLNDFLEQKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein/rna
molecule keywords 4.5 S RNA
publication title A General Strategy to Solve the Phase Problem in RNA Crystallography.
pubmed doi rcsb
source organism Escherichia coli
total genus 17
structure length 69
sequence length 102
ec nomenclature
pdb deposition date 2007-05-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.30 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) Signal recognition particle, SRP54 subunit, M-domain 2pxpA00
2XXAA 2PXQA 2PXTA 2PXUA 1QZXA 2PXKA 3KL4A 2JQEA 2PXPA 3DM5A 3LQXA 2PXDA 1QB2A 2PXLA 1DULA 2V3CC 2PXEA 2PXBA 2PXVA 2FFHA 2PXFA 1HQ1A 3NDBB 1MFQC 5GAGi 5GAHi
chains in the Genus database with same CATH superfamily
2MXDA 3FMYA 5A7LA 1ZAYA 4Z58A 2PXPA 5K98B 3TELA 2PIJA 3GZCA 2WUSR 4HRAA 1PERL 4I6UA 2XSDC 4DE8A 4X4EA 2L8NA 2O4AA 3ZHIA 1ZS4A 3BDNA 1MFQC 2AXZA 2HFZA 3A9YA 4EKGA 1QZXA 3QFIA 4YG7B 1RIOA 2H8RA 4YG1A 2BNNA 2XJ3A 2FJRA 1POUA 3HZIB 1WH8A 3GUUA 3TRBA 3CECA 2PXEA 4I8TA 1WH6A 3RZZA 1UTXA 3MLFA 1Y7YA 2PXUA 3SR4A 5DTMA 1PRVA 1E3OC 1PRAA 3R1FA 4I6TA 3GZDC 2AXUA 1UXDA 2FFHA 3OQNA 1NERA 2IVGA 3FYMA 3ZPXA 2XI8A 4X4IA 3R09A 3U3WA 4X4BA 3VK0A 1ZZ8A 2PUBA 3G5GA 4MCTA 2PXLA 3ZHMA 5DRYA 3MEJA 4PU4C 3TEPA 1Y9QA 4X4HA 2ODRD 1EFAA 1ZZ6A 1ZZBA 1YSEA 2O49A 1JFSA 4JQDA 4JCXA 2AW6A 3LISA 3NZLA 2IU7A 3OQMA 1QQBA 2PUFA 4GHJA 3CLCA 4Z59A 5DT2A 1CQTA 2PXBA 4DE9A 3JXBC 3ME5A 3UFDA 2M4HA 2WIUB 4PU8A 1OSLA 3LFPA 1DWKA 1SQ8A 1JFTA 2PPXA 3SCFA 3VWSA 2JCGA 1OCTC 1VPWA 2V3CC 4OB4A 3QWGA 1R63A 2GRLA 2XXPA 4NDWA 2PXFA 4Q2JA 1QP4A 1LMB3 3QOXA 1WETA 2HSGA 5DTRA 4WVLA 2LYRA 4PU3C 3SCHA 2VEOA 4O8BA 2IV1A 3CROL 3OP9A 1PNRA 2J7WA 2AXVA 1PRUA 4ER3A 3SX0A 1L1MA 5JUWA 2LYSA 1JH9A 4EKIA 1IC8A 4YG4A 3D1NI 4PU7A 3G7DA 3EUSA 2LCVA 2HCNA 3TFLA 4Z5DA 2PE5A 4GQMA 3F52A 4X4GA 2KZ8A 4JCYA 2ICPA 3BD1A 1QPZA 3GN5B 2PUAA 2LYLA 1XWRA 2IVQA 4ER6A 4I6RA 3A9XA 2XIUA 1X2LA 2PXDA 4FBIA 2LYPA 2J7UA 2KPJA 1RPEL 2YBDA 3DNVB 2OR1L 1GT0C 5DRTA 2JVLA 1LLIA 3QOWA 3LQXA 1QQAA 1QB2A 3OKZA 2LLVA 1LCDA 4EK9A 2PXVA 1B0NA 3UWPA 1ZZ7A 2LYKA 2MQKA 2LYQA 1QP7A 2XXAA 2GRMA 2B5AA 1ZVVA 2CSFA 2JQEA 3GBFA 1ZZ9A 1UXCA 2PUGA 2LYJA 3O9XA 1BDHA 4ER0A 1WIZA 3F6WA 2BNMA 1JWLA 2MEZA 2XCJA 3QQ6A 4X4DA 4Z5HA 4IWRA 3OWQA 2L1PA 3OQOA 3KJXA 3KL4A 1QP0A 2PUDA 1RZSA 1ZUGA 1LCCA 4X4CA 2LNMA 3PE5A 4X4FA 5DSXA 2EBYA 2O38A 1HQ1A 4YARA 2BJCA 2ICTA 2AWIA 1U2ZA 5GAGi 3IVPA 2PXQA 3QF3A 3QYXA 2GZUA 1LQCA 3OMTA 3NXHA 1CJGA 1RZRA 2HCSA 3PXPA 1S7EA 2PUCA 2L49A 2HINA 1BDIA 3S8QA 3H5TA 2R1JL 3KZ3A 2IVBA 2KEIA 3ZKCA 4OBMA 2D5VA 2PXTA 4EQZA 4YBAA 3BS3A 3M9LA 3JXCL 3GN5A 4Y42A 4Z5CA 3FYAA 1DULA 2EWTA 1AU7A 3G0TA 4F8DA 2CROA 2OFYA 4EZIA 2BNOA 4IA8A 3A9ZA 1ADRA 2AUWA 5GAHi 4ER7A 1DW9A 3GZDA 1NW3A 4J1XA 3DM5A 2KEKA 4FN3A 5DTQA 2LLWA 3NROA 1ZZCA 3KXAA 4MCXA 3JXDL 1HF0A 2R63A 4ER5A 3F51A 1R69A 2PUEA 1ZPQA 1RZRD 2XXQA 2PXKA 4J1WA 1O4XA 3B7HA 2KEJA 1X57A 2IUOA 4IVZA 3NDBB 1NEQA 3L1PA 2A6CA 3SCGA 2EF8A
chains in the Genus database with same CATH topology
2XXAA 2PXQA 2PXTA 2PXUA 1QZXA 2PXKA 3KL4A 2JQEA 2PXPA 3DM5A 3LQXA 2PXDA 1QB2A 2PXLA 1DULA 2V3CC 2PXEA 2PXBA 2PXVA 2FFHA 2PXFA 1HQ1A 3NDBB 1MFQC 5GAGi 5GAHi
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XXA A;  2PXQ A;  2PXT A;  2PXU A;  1QZX A;  2PXK A;  3KL4 A;  2JQE A;  2PXP A;  3DM5 A;  3LQX A;  2PXD A;  1QB2 A;  2PXL A;  1DUL A;  2V3C C;  2PXE A;  2PXB A;  2PXV A;  2FFH A;  2PXF A;  1HQ1 A;  3NDB B;  1MFQ C;  5GAG i;  5GAH i; 
#chains in the Genus database with same CATH topology
 2MXD A;  3FMY A;  5A7L A;  1ZAY A;  4Z58 A;  2PXP A;  5K98 B;  3TEL A;  2PIJ A;  3GZC A;  2WUS R;  4HRA A;  1PER L;  4I6U A;  2XSD C;  4DE8 A;  4X4E A;  2L8N A;  2O4A A;  3ZHI A;  1ZS4 A;  3BDN A;  1MFQ C;  2AXZ A;  2HFZ A;  3A9Y A;  4EKG A;  1QZX A;  3QFI A;  4YG7 B;  1RIO A;  2H8R A;  4YG1 A;  2BNN A;  2XJ3 A;  2FJR A;  1POU A;  3HZI B;  1WH8 A;  3GUU A;  3TRB A;  3CEC A;  2PXE A;  4I8T A;  1WH6 A;  3RZZ A;  1UTX A;  3MLF A;  1Y7Y A;  2PXU A;  3SR4 A;  5DTM A;  1PRV A;  1E3O C;  1PRA A;  3R1F A;  4I6T A;  3GZD C;  2AXU A;  1UXD A;  2FFH A;  3OQN A;  1NER A;  2IVG A;  3FYM A;  3ZPX A;  2XI8 A;  4X4I A;  3R09 A;  3U3W A;  4X4B A;  3VK0 A;  1ZZ8 A;  2PUB A;  3G5G A;  4MCT A;  2PXL A;  3ZHM A;  5DRY A;  3MEJ A;  4PU4 C;  3TEP A;  1Y9Q A;  4X4H A;  2ODR D;  1EFA A;  1ZZ6 A;  1ZZB A;  1YSE A;  2O49 A;  1JFS A;  4JQD A;  4JCX A;  2AW6 A;  3LIS A;  3NZL A;  2IU7 A;  3OQM A;  1QQB A;  2PUF A;  4GHJ A;  3CLC A;  4Z59 A;  5DT2 A;  1CQT A;  2PXB A;  4DE9 A;  3JXB C;  3ME5 A;  3UFD A;  2M4H A;  2WIU B;  4PU8 A;  1OSL A;  3LFP A;  1DWK A;  1SQ8 A;  1JFT A;  2PPX A;  3SCF A;  3VWS A;  2JCG A;  1OCT C;  1VPW A;  2V3C C;  4OB4 A;  3QWG A;  1R63 A;  2GRL A;  2XXP A;  4NDW A;  2PXF A;  4Q2J A;  1QP4 A;  1LMB 3;  3QOX A;  1WET A;  2HSG A;  5DTR A;  4WVL A;  2LYR A;  4PU3 C;  3SCH A;  2VEO A;  4O8B A;  2IV1 A;  3CRO L;  3OP9 A;  1PNR A;  2J7W A;  2AXV A;  1PRU A;  4ER3 A;  3SX0 A;  1L1M A;  5JUW A;  2LYS A;  1JH9 A;  4EKI A;  1IC8 A;  4YG4 A;  3D1N I;  4PU7 A;  3G7D A;  3EUS A;  2LCV A;  2HCN A;  3TFL A;  4Z5D A;  2PE5 A;  4GQM A;  3F52 A;  4X4G A;  2KZ8 A;  4JCY A;  2ICP A;  3BD1 A;  1QPZ A;  3GN5 B;  2PUA A;  2LYL A;  1XWR A;  2IVQ A;  4ER6 A;  4I6R A;  3A9X A;  2XIU A;  1X2L A;  2PXD A;  4FBI A;  2LYP A;  2J7U A;  2KPJ A;  1RPE L;  2YBD A;  3DNV B;  2OR1 L;  1GT0 C;  5DRT A;  2JVL A;  1LLI A;  3QOW A;  3LQX A;  1QQA A;  1QB2 A;  3OKZ A;  2LLV A;  1LCD A;  4EK9 A;  2PXV A;  1B0N A;  3UWP A;  1ZZ7 A;  2LYK A;  2MQK A;  2LYQ A;  1QP7 A;  2XXA A;  2GRM A;  2B5A A;  1ZVV A;  2CSF A;  2JQE A;  3GBF A;  1ZZ9 A;  1UXC A;  2PUG A;  2LYJ A;  3O9X A;  1BDH A;  4ER0 A;  1WIZ A;  3F6W A;  2BNM A;  1JWL A;  2MEZ A;  2XCJ A;  3QQ6 A;  4X4D A;  4Z5H A;  4IWR A;  3OWQ A;  2L1P A;  3OQO A;  3KJX A;  3KL4 A;  1QP0 A;  2PUD A;  1RZS A;  1ZUG A;  1LCC A;  4X4C A;  2LNM A;  3PE5 A;  4X4F A;  5DSX A;  2EBY A;  2O38 A;  1HQ1 A;  4YAR A;  2BJC A;  2ICT A;  2AWI A;  1U2Z A;  5GAG i;  3IVP A;  2PXQ A;  3QF3 A;  3QYX A;  2GZU A;  1LQC A;  3OMT A;  3NXH A;  1CJG A;  1RZR A;  2HCS A;  3PXP A;  1S7E A;  2PUC A;  2L49 A;  2HIN A;  1BDI A;  3S8Q A;  3H5T A;  2R1J L;  3KZ3 A;  2IVB A;  2KEI A;  3ZKC A;  4OBM A;  2D5V A;  2PXT A;  4EQZ A;  4YBA A;  3BS3 A;  3M9L A;  3JXC L;  3GN5 A;  4Y42 A;  4Z5C A;  3FYA A;  1DUL A;  2EWT A;  1AU7 A;  3G0T A;  4F8D A;  2CRO A;  2OFY A;  4EZI A;  2BNO A;  4IA8 A;  3A9Z A;  1ADR A;  2AUW A;  5GAH i;  4ER7 A;  1DW9 A;  3GZD A;  1NW3 A;  4J1X A;  3DM5 A;  2KEK A;  4FN3 A;  5DTQ A;  2LLW A;  3NRO A;  1ZZC A;  3KXA A;  4MCX A;  3JXD L;  1HF0 A;  2R63 A;  4ER5 A;  3F51 A;  1R69 A;  2PUE A;  1ZPQ A;  1RZR D;  2XXQ A;  2PXK A;  4J1W A;  1O4X A;  3B7H A;  2KEJ A;  1X57 A;  2IUO A;  4IVZ A;  3NDB B;  1NEQ A;  3L1P A;  2A6C A;  3SCG A;  2EF8 A; 
#chains in the Genus database with same CATH homology
 2XXA A;  2PXQ A;  2PXT A;  2PXU A;  1QZX A;  2PXK A;  3KL4 A;  2JQE A;  2PXP A;  3DM5 A;  3LQX A;  2PXD A;  1QB2 A;  2PXL A;  1DUL A;  2V3C C;  2PXE A;  2PXB A;  2PXV A;  2FFH A;  2PXF A;  1HQ1 A;  3NDB B;  1MFQ C;  5GAG i;  5GAH i; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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