2PXVA

Variant 6 of ribonucleoprotein core of the e. coli signal recognition particle
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
102
structure length
69
Chain Sequence
FDLNDFLEQKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein/rna
molecule keywords 4.5 S RNA
publication title A General Strategy to Solve the Phase Problem in RNA Crystallography.
pubmed doi rcsb
source organism Escherichia coli
total genus 15
structure length 69
sequence length 102
ec nomenclature
pdb deposition date 2007-05-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.30 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) Signal recognition particle, SRP54 subunit, M-domain 2pxvA00
2PXTA 2PXQA 2PXLA 1DULA 3NDBB 2PXDA 1QB2A 2PXUA 5GAHi 3KL4A 5GAGi 2PXBA 1QZXA 2XXAA 2PXVA 3LQXA 2FFHA 1HQ1A 3DM5A 2PXKA 2PXEA 2PXFA 2PXPA 2V3CC 1MFQC 2JQEA
chains in the Genus database with same CATH superfamily
2FJRA 4ER6A 3ZHIA 2L1PA 2EF8A 2OFYA 3BD1A 1PRUA 2XI8A 3F52A 1QQBA 1NW3A 2FFHA 3VK0A 2PUFA 1LMB3 3KZ3A 2AXVA 1ZZ9A 2XCJA 4X4DA 1R69A 4NDWA 2WUSR 4PU7A 2LYKA 1DULA 1ZPQA 4EK9A 3VWSA 3QOXA 2BNNA 5GAGi 2J7WA 1QZXA 3OQNA 1QPZA 2PUDA 3ZKCA 1UTXA 2AUWA 1PERL 2LYRA 1ZZBA 4X4CA 3L1PA 2PE5A 3QWGA 3GZDC 3G7DA 2HFZA 2XIUA 1QP0A 2GZUA 2MQKA 3KL4A 3B7HA 3QYXA 5DSXA 1XWRA 4IA8A 3NXHA 3GBFA 5DRTA 1NEQA 3FYAA 2O49A 1SQ8A 4HRAA 2PXTA 4EKGA 1RIOA 2LYQA 1PRVA 2GRLA 3S8QA 1QQAA 2IUOA 4EZIA 4GQMA 3FMYA 3LQXA 1UXCA 1Y9QA 2KEIA 3CECA 3JXCL 4OBMA 2XXQA 4F8DA 2BNOA 4X4IA 1QP7A 1Y7YA 3KXAA 3NDBB 1X57A 3O9XA 2AXUA 3ZHMA 3R09A 2J7UA 3SCFA 4JCXA 3G5GA 2AW6A 2R63A 2LCVA 3BDNA 4FBIA 2XJ3A 4EKIA 2HCNA 4PU3C 3TEPA 1ZZCA 2MXDA 2JQEA 4MCXA 2LYLA 1QP4A 3OP9A 3GZDA 2JVLA 2IVQA 2PXDA 4MCTA 2LLVA 3A9ZA 4I6TA 4YG4A 2IV1A 3ME5A 3PE5A 1WH8A 2PXVA 2PUEA 5A7LA 3TFLA 3SCGA 3CROL 2CSFA 1X2LA 2ICPA 3NROA 2L8NA 2LYSA 2EWTA 2PIJA 3EUSA 3MLFA 4EQZA 1OSLA 2IVGA 3OQOA 1ZS4A 2ICTA 3M9LA 2PXEA 2O4AA 1ZZ6A 1R63A 3UWPA 2M4HA 1L1MA 2LYPA 1DW9A 1HF0A 1PNRA 2IU7A 3FYMA 2PUCA 2HCSA 1WIZA 2KZ8A 1RZRA 4YG1A 1LQCA 3OKZA 1WETA 1E3OC 4FN3A 4J1WA 1HQ1A 3DM5A 2PUAA 3H5TA 1JWLA 4Z5HA 2XSDC 1MFQC 2L49A 3DNVB 4Q2JA 2KEKA 1ZAYA 4GHJA 3IVPA 2VEOA 2PPXA 3G0TA 4I6UA 5DTQA 3GN5B 1UXDA 2ODRD 2KEJA 3KJXA 4X4GA 4Z5DA 3OMTA 1VPWA 1LLIA 3GZCA 2MEZA 2R1JL 2PUGA 1BDIA 4X4EA 2PXFA 1LCDA 4JQDA 1B0NA 3SCHA 1WH6A 2B5AA 1QB2A 4ER5A 2HSGA 2PUBA 3BS3A 2XXAA 3NZLA 1ZZ8A 1CQTA 2EBYA 4DE8A 3JXBC 2PXKA 2A6CA 1ZUGA 2OR1L 2BJCA 4DE9A 3GUUA 5DT2A 1ZZ7A 3RZZA 3HZIB 2PXQA 5DTMA 4O8BA 4ER7A 1S7EA 3QQ6A 2PXUA 1POUA 5DTRA 2HINA 2LNMA 3SR4A 4Z58A 4X4BA 3TRBA 5K98B 4WVLA 1CJGA 2PXLA 2CROA 2IVBA 1GT0C 3A9YA 3CLCA 1JH9A 4YG7B 3JXDL 2XXPA 1RZRD 2H8RA 2BNMA 3GN5A 1RPEL 3OWQA 1AU7A 2V3CC 1PRAA 1RZSA 4IWRA 2YBDA 1BDHA 3QFIA 2PXBA 4X4FA 1YSEA 4I6RA 4Z5CA 4PU4C 1IC8A 3D1NI 1LCCA 1EFAA 3LISA 3SX0A 3PXPA 4IVZA 3R1FA 2LLWA 3TELA 4ER0A 1ZVVA 4OB4A 3U3WA 4I8TA 4Y42A 1JFSA 1O4XA 3ZPXA 3QOWA 2WIUB 4Z59A 4YARA 1NERA 2LYJA 5JUWA 2GRMA 1JFTA 4ER3A 3OQMA 1DWKA 2O38A 3F6WA 2AWIA 1U2ZA 3MEJA 1ADRA 5DRYA 2JCGA 1OCTC 5GAHi 4X4HA 4YBAA 3F51A 4J1XA 3QF3A 2KPJA 4PU8A 2D5VA 3UFDA 2PXPA 3LFPA 4JCYA 3A9XA 2AXZA
chains in the Genus database with same CATH topology
2PXTA 2PXQA 2PXLA 1DULA 3NDBB 2PXDA 1QB2A 2PXUA 5GAHi 3KL4A 5GAGi 2PXBA 1QZXA 2XXAA 2PXVA 3LQXA 2FFHA 1HQ1A 3DM5A 2PXKA 2PXEA 2PXFA 2PXPA 2V3CC 1MFQC 2JQEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PXT A;  2PXQ A;  2PXL A;  1DUL A;  3NDB B;  2PXD A;  1QB2 A;  2PXU A;  5GAH i;  3KL4 A;  5GAG i;  2PXB A;  1QZX A;  2XXA A;  2PXV A;  3LQX A;  2FFH A;  1HQ1 A;  3DM5 A;  2PXK A;  2PXE A;  2PXF A;  2PXP A;  2V3C C;  1MFQ C;  2JQE A; 
#chains in the Genus database with same CATH topology
 2FJR A;  4ER6 A;  3ZHI A;  2L1P A;  2EF8 A;  2OFY A;  3BD1 A;  1PRU A;  2XI8 A;  3F52 A;  1QQB A;  1NW3 A;  2FFH A;  3VK0 A;  2PUF A;  1LMB 3;  3KZ3 A;  2AXV A;  1ZZ9 A;  2XCJ A;  4X4D A;  1R69 A;  4NDW A;  2WUS R;  4PU7 A;  2LYK A;  1DUL A;  1ZPQ A;  4EK9 A;  3VWS A;  3QOX A;  2BNN A;  5GAG i;  2J7W A;  1QZX A;  3OQN A;  1QPZ A;  2PUD A;  3ZKC A;  1UTX A;  2AUW A;  1PER L;  2LYR A;  1ZZB A;  4X4C A;  3L1P A;  2PE5 A;  3QWG A;  3GZD C;  3G7D A;  2HFZ A;  2XIU A;  1QP0 A;  2GZU A;  2MQK A;  3KL4 A;  3B7H A;  3QYX A;  5DSX A;  1XWR A;  4IA8 A;  3NXH A;  3GBF A;  5DRT A;  1NEQ A;  3FYA A;  2O49 A;  1SQ8 A;  4HRA A;  2PXT A;  4EKG A;  1RIO A;  2LYQ A;  1PRV A;  2GRL A;  3S8Q A;  1QQA A;  2IUO A;  4EZI A;  4GQM A;  3FMY A;  3LQX A;  1UXC A;  1Y9Q A;  2KEI A;  3CEC A;  3JXC L;  4OBM A;  2XXQ A;  4F8D A;  2BNO A;  4X4I A;  1QP7 A;  1Y7Y A;  3KXA A;  3NDB B;  1X57 A;  3O9X A;  2AXU A;  3ZHM A;  3R09 A;  2J7U A;  3SCF A;  4JCX A;  3G5G A;  2AW6 A;  2R63 A;  2LCV A;  3BDN A;  4FBI A;  2XJ3 A;  4EKI A;  2HCN A;  4PU3 C;  3TEP A;  1ZZC A;  2MXD A;  2JQE A;  4MCX A;  2LYL A;  1QP4 A;  3OP9 A;  3GZD A;  2JVL A;  2IVQ A;  2PXD A;  4MCT A;  2LLV A;  3A9Z A;  4I6T A;  4YG4 A;  2IV1 A;  3ME5 A;  3PE5 A;  1WH8 A;  2PXV A;  2PUE A;  5A7L A;  3TFL A;  3SCG A;  3CRO L;  2CSF A;  1X2L A;  2ICP A;  3NRO A;  2L8N A;  2LYS A;  2EWT A;  2PIJ A;  3EUS A;  3MLF A;  4EQZ A;  1OSL A;  2IVG A;  3OQO A;  1ZS4 A;  2ICT A;  3M9L A;  2PXE A;  2O4A A;  1ZZ6 A;  1R63 A;  3UWP A;  2M4H A;  1L1M A;  2LYP A;  1DW9 A;  1HF0 A;  1PNR A;  2IU7 A;  3FYM A;  2PUC A;  2HCS A;  1WIZ A;  2KZ8 A;  1RZR A;  4YG1 A;  1LQC A;  3OKZ A;  1WET A;  1E3O C;  4FN3 A;  4J1W A;  1HQ1 A;  3DM5 A;  2PUA A;  3H5T A;  1JWL A;  4Z5H A;  2XSD C;  1MFQ C;  2L49 A;  3DNV B;  4Q2J A;  2KEK A;  1ZAY A;  4GHJ A;  3IVP A;  2VEO A;  2PPX A;  3G0T A;  4I6U A;  5DTQ A;  3GN5 B;  1UXD A;  2ODR D;  2KEJ A;  3KJX A;  4X4G A;  4Z5D A;  3OMT A;  1VPW A;  1LLI A;  3GZC A;  2MEZ A;  2R1J L;  2PUG A;  1BDI A;  4X4E A;  2PXF A;  1LCD A;  4JQD A;  1B0N A;  3SCH A;  1WH6 A;  2B5A A;  1QB2 A;  4ER5 A;  2HSG A;  2PUB A;  3BS3 A;  2XXA A;  3NZL A;  1ZZ8 A;  1CQT A;  2EBY A;  4DE8 A;  3JXB C;  2PXK A;  2A6C A;  1ZUG A;  2OR1 L;  2BJC A;  4DE9 A;  3GUU A;  5DT2 A;  1ZZ7 A;  3RZZ A;  3HZI B;  2PXQ A;  5DTM A;  4O8B A;  4ER7 A;  1S7E A;  3QQ6 A;  2PXU A;  1POU A;  5DTR A;  2HIN A;  2LNM A;  3SR4 A;  4Z58 A;  4X4B A;  3TRB A;  5K98 B;  4WVL A;  1CJG A;  2PXL A;  2CRO A;  2IVB A;  1GT0 C;  3A9Y A;  3CLC A;  1JH9 A;  4YG7 B;  3JXD L;  2XXP A;  1RZR D;  2H8R A;  2BNM A;  3GN5 A;  1RPE L;  3OWQ A;  1AU7 A;  2V3C C;  1PRA A;  1RZS A;  4IWR A;  2YBD A;  1BDH A;  3QFI A;  2PXB A;  4X4F A;  1YSE A;  4I6R A;  4Z5C A;  4PU4 C;  1IC8 A;  3D1N I;  1LCC A;  1EFA A;  3LIS A;  3SX0 A;  3PXP A;  4IVZ A;  3R1F A;  2LLW A;  3TEL A;  4ER0 A;  1ZVV A;  4OB4 A;  3U3W A;  4I8T A;  4Y42 A;  1JFS A;  1O4X A;  3ZPX A;  3QOW A;  2WIU B;  4Z59 A;  4YAR A;  1NER A;  2LYJ A;  5JUW A;  2GRM A;  1JFT A;  4ER3 A;  3OQM A;  1DWK A;  2O38 A;  3F6W A;  2AWI A;  1U2Z A;  3MEJ A;  1ADR A;  5DRY A;  2JCG A;  1OCT C;  5GAH i;  4X4H A;  4YBA A;  3F51 A;  4J1X A;  3QF3 A;  2KPJ A;  4PU8 A;  2D5V A;  3UFD A;  2PXP A;  3LFP A;  4JCY A;  3A9X A;  2AXZ A; 
#chains in the Genus database with same CATH homology
 2PXT A;  2PXQ A;  2PXL A;  1DUL A;  3NDB B;  2PXD A;  1QB2 A;  2PXU A;  5GAH i;  3KL4 A;  5GAG i;  2PXB A;  1QZX A;  2XXA A;  2PXV A;  3LQX A;  2FFH A;  1HQ1 A;  3DM5 A;  2PXK A;  2PXE A;  2PXF A;  2PXP A;  2V3C C;  1MFQ C;  2JQE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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