2PYAA

Ultra-high resolution structure of p. abyssi rubredoxin w4l/r5s/a44s
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
52
structure length
52
Chain Sequence
AKLSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGSPKSEFERIE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
source organism Pyrococcus abyssi
publication title Ultrahigh-resolution study on Pyrococcus abyssi rubredoxin: II. Introduction of an O-H...Sgamma-Fe hydrogen bond increased the reduction potential by 65 mV.
pubmed doi rcsb
molecule keywords Rubredoxin
total genus 10
structure length 52
sequence length 52
ec nomenclature
pdb deposition date 2007-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 2pyaA00
3RZ6A 1T9OA 1S24A 1S2ZA 2MS3A 2M4YA 2VL6A 1JYBA 1H7VA 1R0FA 1FHMA 1YUXA 6RXNA 1RDGA 1SMWA 1C09A 3RZTA 1QCVA 3KYVA 3KYYA 4RXNA 2LCQA 1R0IA 3SS2A 4POFA 2QL0A 2GMGA 1YK5A 2PYAA 3KYUA 1CAAA 1FHHA 2RDVA 1BRFA 1B13A 1IU6A 2PVXA 4YWMA 3A44A 1ZRPA 1VCXA 1RWDA 1RDVA 4YWLA 1LKPA 4AR4A 8RXNA 1NNQA 1LTLA 3MPSA 1IRNA 3PWFA 1BE7A 1LKMA 1QYBA 2KKDA 4AR6A 3KYWA 4K9FA 5AI2A 2V3BB 1DX8A 1B2JA 1SMMA 2HR5A 5RXNA 5AI3A 3RYGA 1YK4A 1CADA 1SMUA 1R0HA 1IU5A 1RB9A 4AR5A 1BFYA 1B2OA 1B71A 2DSXA 1S30A 1T9QA 1R0GA 1RYTA 1DVBA 1T9PA 3PZAA 5IY0A 1YUZA 4POGA 4ME3A 1IROA 2PVEA 3KYXA 4TPUA 2K2DA 1LKOA 1R0JA 4AR3A 1BQ8A 1BQ9A 3QVDA 1YV1A 1E8JA 7RXNA 2KN9A
chains in the Genus database with same CATH superfamily
5GAGc 1QQTA 5C4JL 5C44L 3HOYL 1R0FA 3HAXC 5JVH1 3GTLL 2Z3RB 1YUXA 1C09A 5IYCL 2CKCA 3S2HL 3PIP1 1R0IA 4WFN1 2QL0A 2GMGA 5IP7L 1CAAA 5K2ME 3IU3I 1FHHA 2RDVA 1I6HL 3S16L 1BRFA 3K35A 1PFYA 2V0FA 4JAFA 1ZRPA 1RWDA 8RXNA 3H9CA 2L0ZA 3S1RL 5IYBL 1Z92B 1TWHL 3PKJA 3KYWA 2ERJA 2V3BB 2WAQP 2XJUA 4C3IL 3HOWL 4JAGA 1B2JA 1SMMA 3P2AA 2HR5A 5IP9L 4ZN3B 1YK4A 3GTPL 1SMUA 3HOVL 2NVXL 3HJWB 1R0HA 4AR5A 1S30A 1T9PA 3H97A 1Y1WL 4BBRL 4POGA 3HOXL 2XJQA 3WWLA 2A68D 2M6OA 3LPEB 1NXEA 5GAEc 5GADc 4A3CL 1PFUA 2AYJA 3HOUL 5EIOC 3MSUA 4TPUA 1LKOA 1NXGA 2H12A 3HKZP 2JA5L 2M6PA 1BQ8A 4A93L 1YV1A 7RXNA 2CKAA 2KN9A 5C3EL 1T9OA 1S2ZA 5M5YL 4AI0A 1TWGL 3B0AB 1SMWA 4ZN1B 3GTML 1PFVA 3KYUA 1B13A 4X6AL 5C4XL 4YWMA 3A44A 3PL5A 2HVYC 3HOZL 2E2HL 1RDVA 1VZIA 3MQKB 4A3DL 5IYDL 1P7PA 1LTLA 3LWPB 3MPSA 1IRNA 4E6YA 1BE7A 2AUSB 3JR7A 3S2DL 4AR6A 4C3JL 4LHNA 5FLML 3WWNB 2J9UB 4U671 1IW7D 1WJVA 4GS7D 1DX8A 3B08B 4JADA 2JI2A 3M4OL 3I4ML 3NFPI 3RZDL 1PFWA 4BBSL 2NVYL 4XGHA 1IU5A 2Z3QB 3ZG6A 1TWFL 4V196 1B71A 1R0GA 4AHWA 1PZXA 1TWAL 2R92L 1YUZA 4TVMA 2XJSA 4A3IL 2A6HD 4ME3A 1ODHA 1VZHA 2PVEA 3FKIL 4C2M1 3QQCE 4A3JL 3HJYB 2JI1A 4BXXL 3QVDA 4BY7L 1E8JA 3LWQB 2JI3A 3RZ6A 2EY4E 1S24A 5M3FL 2VUML 1RDGA 3RZTA 3KYVA 3PO3L 2B5ID 3KYYA 1OWCA 4POFA 2JA8L 5DM61 2PYAA 2R7ZL 3VPBE 2CR8A 1IU6A 2BE5D 2ERSA 1VCXA 4A3KL 3S1QL 2R93L 1LKPA 1VZGA 1NNQA 4AI1A 2XJRA 5EINC 4AHYA 1OWBA 3PWFA 2KKDA 2E2JL 4A3ML 3S14L 1R9TL 5MFZA 4K9FA 2A69D 2PPTA 5RXNA 2C6BA 1I3QL 3H99A 2YU9L 4JAEA 3FDJA 4BY1L 4LHLA 1RYQA 1RB9A 5H1Sc 1B2OA 2DSXA 3CQZL 2B63L 3PZAA 3GTJL 3GTQL 4Y7NL 2JA6L 5M5WL 4A3BL 1SFOL 3S15L 3J7Y1 2XJVA 3P8BA 3H9BA 2PSMC 5DM71 4AR3A 3S1ML 1WCML 1BQ9A 4A3LL 2MS3A 2M4YA 2VL6A 2M4VA 5MFPA 1JYBA 1H7VA 5MGNA 1FHMA 6RXNA 2NYDA 2O5JD 3H0GL 1QCVA 2C6AA 3LWVB 4RXNA 2LCQA 4XXBB 3SS2A 1YK5A 1TWCL 3PKIA 3RZOL 2WB1P 2PVXA 4A3GL 3M3YL 3GTKL 4G6BA 3LNLA 4YWLA 2PMZP 5M5XL 3GTOL 4AR4A 2A6ED 2V0EA 2AQCA 4A3EL 1LKMA 1QYBA 1Y1VL 2XJPA 4AI2A 4AI3A 3LWOB 3GTGL 2NVQL 5AI2A 1K83L 3PIO1 5JVG1 4AYBP 3H3VM 4AHZA 5AI3A 3J7Z1 3RYGA 4UY81 1CADA 5FJ8L 3K7AL 4C3HL 3I4NL 2JA7L 4AHXA 3S1NL 1BFYA 1T9QA 1F4LA 1RYTA 3PO2L 1DVBA 5IY0A 2NVTL 4A3FL 2Y0SP 5M3ML 5MLC3 1IROA 3LWRB 2E2IL 4QIWP 2XJTA 2RFKB 3S17L 3KYXA 2K2DA 5MF6A 2APOB 1I50L 4Y52L 5GAHc 1R0JA 2ZIXA 4B8CD 5AN9H
chains in the Genus database with same CATH topology
3RZ6A 1T9OA 1S24A 1S2ZA 2MS3A 5GAGc 2M4YA 2VL6A 2M4VA 5MFPA 1JYBA 1H7VA 1R0FA 4AI0A 5MGNA 5JVH1 1FHMA 2Z3RB 1YUXA 3B0AB 6RXNA 2NYDA 1RDGA 1SMWA 2O5JD 1C09A 4ZN1B 3RZTA 1QCVA 2C6AA 3KYVA 2B5ID 3KYYA 2CKCA 4RXNA 2LCQA 4XXBB 1OWCA 1R0IA 3SS2A 3PIP1 4WFN1 4POFA 2QL0A 2GMGA 5DM61 1YK5A 2PYAA 3KYUA 1CAAA 5K2ME 3IU3I 1FHHA 2RDVA 3VPBE 1BRFA 3PKIA 3K35A 1B13A 2V0FA 2CR8A 1IU6A 2PVXA 4JAFA 4YWMA 3A44A 2BE5D 1ZRPA 1VCXA 2ERSA 1RWDA 4G6BA 1RDVA 3LNLA 4YWLA 1VZIA 1LKPA 1VZGA 4AR4A 8RXNA 1NNQA 2A6ED 4AI1A 2XJRA 5EINC 1LTLA 2L0ZA 4AHYA 1OWBA 2V0EA 3MPSA 1IRNA 1Z92B 1BE7A 3PWFA 4E6YA 1LKMA 1QYBA 2KKDA 2XJPA 4AR6A 3PKJA 4AI2A 4LHNA 4AI3A 3WWNB 3KYWA 2J9UB 5MFZA 4U671 2ERJA 1IW7D 4K9FA 5AI2A 2A69D 2V3BB 1WJVA 4GS7D 2PPTA 2XJUA 3PIO1 5JVG1 1DX8A 4JAGA 1B2JA 1SMMA 4AHZA 3P2AA 3B08B 2HR5A 2C6BA 5RXNA 5AI3A 4JADA 2JI2A 3J7Z1 3RYGA 4ZN3B 1YK4A 4JAEA 4UY81 1CADA 1SMUA 3NFPI 1R0HA 4XGHA 2KN9A 4LHLA 1IU5A 2Z3QB 3ZG6A 1RYQA 4AHXA 1RB9A 4AR5A 5H1Sc 1BFYA 4V196 1B2OA 1B71A 2DSXA 1S30A 1T9QA 1R0GA 1RYTA 1DVBA 4AHWA 1T9PA 3PZAA 5IY0A 1YUZA 4TVMA 4POGA 2XJSA 2A6HD 2XJQA 4ME3A 3WWLA 5MLC3 1IROA 1ODHA 1VZHA 2A68D 2M6OA 3LPEB 2XJTA 1NXEA 5GAEc 5GADc 2AYJA 5EIOC 2PVEA 3KYXA 3MSUA 4TPUA 2K2DA 1LKOA 1NXGA 2H12A 3J7Y1 2XJVA 3P8BA 3QQCE 5MF6A 2PSMC 2M6PA 5DM71 5GAHc 1R0JA 4AR3A 2ZIXA 1BQ8A 1BQ9A 2JI1A 4B8CD 3QVDA 5AN9H 1YV1A 1E8JA 7RXNA 2CKAA 2JI3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RZ6 A;  1T9O A;  1S24 A;  1S2Z A;  2MS3 A;  2M4Y A;  2VL6 A;  1JYB A;  1H7V A;  1R0F A;  1FHM A;  1YUX A;  6RXN A;  1RDG A;  1SMW A;  1C09 A;  3RZT A;  1QCV A;  3KYV A;  3KYY A;  4RXN A;  2LCQ A;  1R0I A;  3SS2 A;  4POF A;  2QL0 A;  2GMG A;  1YK5 A;  2PYA A;  3KYU A;  1CAA A;  1FHH A;  2RDV A;  1BRF A;  1B13 A;  1IU6 A;  2PVX A;  4YWM A;  3A44 A;  1ZRP A;  1VCX A;  1RWD A;  1RDV A;  4YWL A;  1LKP A;  4AR4 A;  8RXN A;  1NNQ A;  1LTL A;  3MPS A;  1IRN A;  3PWF A;  1BE7 A;  1LKM A;  1QYB A;  2KKD A;  4AR6 A;  3KYW A;  4K9F A;  5AI2 A;  2V3B B;  1DX8 A;  1B2J A;  1SMM A;  2HR5 A;  5RXN A;  5AI3 A;  3RYG A;  1YK4 A;  1CAD A;  1SMU A;  1R0H A;  1IU5 A;  1RB9 A;  4AR5 A;  1BFY A;  1B2O A;  1B71 A;  2DSX A;  1S30 A;  1T9Q A;  1R0G A;  1RYT A;  1DVB A;  1T9P A;  3PZA A;  5IY0 A;  1YUZ A;  4POG A;  4ME3 A;  1IRO A;  2PVE A;  3KYX A;  4TPU A;  2K2D A;  1LKO A;  1R0J A;  4AR3 A;  1BQ8 A;  1BQ9 A;  3QVD A;  1YV1 A;  1E8J A;  7RXN A;  2KN9 A; 
#chains in the Genus database with same CATH topology
 5GAG c;  1QQT A;  5C4J L;  5C44 L;  3HOY L;  1R0F A;  3HAX C;  5JVH 1;  3GTL L;  2Z3R B;  1YUX A;  1C09 A;  5IYC L;  2CKC A;  3S2H L;  3PIP 1;  1R0I A;  4WFN 1;  2QL0 A;  2GMG A;  5IP7 L;  1CAA A;  5K2M E;  3IU3 I;  1FHH A;  2RDV A;  1I6H L;  3S16 L;  1BRF A;  3K35 A;  1PFY A;  2V0F A;  4JAF A;  1ZRP A;  1RWD A;  8RXN A;  3H9C A;  2L0Z A;  3S1R L;  5IYB L;  1Z92 B;  1TWH L;  3PKJ A;  3KYW A;  2ERJ A;  2V3B B;  2WAQ P;  2XJU A;  4C3I L;  3HOW L;  4JAG A;  1B2J A;  1SMM A;  3P2A A;  2HR5 A;  5IP9 L;  4ZN3 B;  1YK4 A;  3GTP L;  1SMU A;  3HOV L;  2NVX L;  3HJW B;  1R0H A;  4AR5 A;  1S30 A;  1T9P A;  3H97 A;  1Y1W L;  4BBR L;  4POG A;  3HOX L;  2XJQ A;  3WWL A;  2A68 D;  2M6O A;  3LPE B;  1NXE A;  5GAE c;  5GAD c;  4A3C L;  1PFU A;  2AYJ A;  3HOU L;  5EIO C;  3MSU A;  4TPU A;  1LKO A;  1NXG A;  2H12 A;  3HKZ P;  2JA5 L;  2M6P A;  1BQ8 A;  4A93 L;  1YV1 A;  7RXN A;  2CKA A;  2KN9 A;  5C3E L;  1T9O A;  1S2Z A;  5M5Y L;  4AI0 A;  1TWG L;  3B0A B;  1SMW A;  4ZN1 B;  3GTM L;  1PFV A;  3KYU A;  1B13 A;  4X6A L;  5C4X L;  4YWM A;  3A44 A;  3PL5 A;  2HVY C;  3HOZ L;  2E2H L;  1RDV A;  1VZI A;  3MQK B;  4A3D L;  5IYD L;  1P7P A;  1LTL A;  3LWP B;  3MPS A;  1IRN A;  4E6Y A;  1BE7 A;  2AUS B;  3JR7 A;  3S2D L;  4AR6 A;  4C3J L;  4LHN A;  5FLM L;  3WWN B;  2J9U B;  4U67 1;  1IW7 D;  1WJV A;  4GS7 D;  1DX8 A;  3B08 B;  4JAD A;  2JI2 A;  3M4O L;  3I4M L;  3NFP I;  3RZD L;  1PFW A;  4BBS L;  2NVY L;  4XGH A;  1IU5 A;  2Z3Q B;  3ZG6 A;  1TWF L;  4V19 6;  1B71 A;  1R0G A;  4AHW A;  1PZX A;  1TWA L;  2R92 L;  1YUZ A;  4TVM A;  2XJS A;  4A3I L;  2A6H D;  4ME3 A;  1ODH A;  1VZH A;  2PVE A;  3FKI L;  4C2M 1;  3QQC E;  4A3J L;  3HJY B;  2JI1 A;  4BXX L;  3QVD A;  4BY7 L;  1E8J A;  3LWQ B;  2JI3 A;  3RZ6 A;  2EY4 E;  1S24 A;  5M3F L;  2VUM L;  1RDG A;  3RZT A;  3KYV A;  3PO3 L;  2B5I D;  3KYY A;  1OWC A;  4POF A;  2JA8 L;  5DM6 1;  2PYA A;  2R7Z L;  3VPB E;  2CR8 A;  1IU6 A;  2BE5 D;  2ERS A;  1VCX A;  4A3K L;  3S1Q L;  2R93 L;  1LKP A;  1VZG A;  1NNQ A;  4AI1 A;  2XJR A;  5EIN C;  4AHY A;  1OWB A;  3PWF A;  2KKD A;  2E2J L;  4A3M L;  3S14 L;  1R9T L;  5MFZ A;  4K9F A;  2A69 D;  2PPT A;  5RXN A;  2C6B A;  1I3Q L;  3H99 A;  2YU9 L;  4JAE A;  3FDJ A;  4BY1 L;  4LHL A;  1RYQ A;  1RB9 A;  5H1S c;  1B2O A;  2DSX A;  3CQZ L;  2B63 L;  3PZA A;  3GTJ L;  3GTQ L;  4Y7N L;  2JA6 L;  5M5W L;  4A3B L;  1SFO L;  3S15 L;  3J7Y 1;  2XJV A;  3P8B A;  3H9B A;  2PSM C;  5DM7 1;  4AR3 A;  3S1M L;  1WCM L;  1BQ9 A;  4A3L L;  2MS3 A;  2M4Y A;  2VL6 A;  2M4V A;  5MFP A;  1JYB A;  1H7V A;  5MGN A;  1FHM A;  6RXN A;  2NYD A;  2O5J D;  3H0G L;  1QCV A;  2C6A A;  3LWV B;  4RXN A;  2LCQ A;  4XXB B;  3SS2 A;  1YK5 A;  1TWC L;  3PKI A;  3RZO L;  2WB1 P;  2PVX A;  4A3G L;  3M3Y L;  3GTK L;  4G6B A;  3LNL A;  4YWL A;  2PMZ P;  5M5X L;  3GTO L;  4AR4 A;  2A6E D;  2V0E A;  2AQC A;  4A3E L;  1LKM A;  1QYB A;  1Y1V L;  2XJP A;  4AI2 A;  4AI3 A;  3LWO B;  3GTG L;  2NVQ L;  5AI2 A;  1K83 L;  3PIO 1;  5JVG 1;  4AYB P;  3H3V M;  4AHZ A;  5AI3 A;  3J7Z 1;  3RYG A;  4UY8 1;  1CAD A;  5FJ8 L;  3K7A L;  4C3H L;  3I4N L;  2JA7 L;  4AHX A;  3S1N L;  1BFY A;  1T9Q A;  1F4L A;  1RYT A;  3PO2 L;  1DVB A;  5IY0 A;  2NVT L;  4A3F L;  2Y0S P;  5M3M L;  5MLC 3;  1IRO A;  3LWR B;  2E2I L;  4QIW P;  2XJT A;  2RFK B;  3S17 L;  3KYX A;  2K2D A;  5MF6 A;  2APO B;  1I50 L;  4Y52 L;  5GAH c;  1R0J A;  2ZIX A;  4B8C D;  5AN9 H; 
#chains in the Genus database with same CATH homology
 3RZ6 A;  1T9O A;  1S24 A;  1S2Z A;  2MS3 A;  5GAG c;  2M4Y A;  2VL6 A;  2M4V A;  5MFP A;  1JYB A;  1H7V A;  1R0F A;  4AI0 A;  5MGN A;  5JVH 1;  1FHM A;  2Z3R B;  1YUX A;  3B0A B;  6RXN A;  2NYD A;  1RDG A;  1SMW A;  2O5J D;  1C09 A;  4ZN1 B;  3RZT A;  1QCV A;  2C6A A;  3KYV A;  2B5I D;  3KYY A;  2CKC A;  4RXN A;  2LCQ A;  4XXB B;  1OWC A;  1R0I A;  3SS2 A;  3PIP 1;  4WFN 1;  4POF A;  2QL0 A;  2GMG A;  5DM6 1;  1YK5 A;  2PYA A;  3KYU A;  1CAA A;  5K2M E;  3IU3 I;  1FHH A;  2RDV A;  3VPB E;  1BRF A;  3PKI A;  3K35 A;  1B13 A;  2V0F A;  2CR8 A;  1IU6 A;  2PVX A;  4JAF A;  4YWM A;  3A44 A;  2BE5 D;  1ZRP A;  1VCX A;  2ERS A;  1RWD A;  4G6B A;  1RDV A;  3LNL A;  4YWL A;  1VZI A;  1LKP A;  1VZG A;  4AR4 A;  8RXN A;  1NNQ A;  2A6E D;  4AI1 A;  2XJR A;  5EIN C;  1LTL A;  2L0Z A;  4AHY A;  1OWB A;  2V0E A;  3MPS A;  1IRN A;  1Z92 B;  1BE7 A;  3PWF A;  4E6Y A;  1LKM A;  1QYB A;  2KKD A;  2XJP A;  4AR6 A;  3PKJ A;  4AI2 A;  4LHN A;  4AI3 A;  3WWN B;  3KYW A;  2J9U B;  5MFZ A;  4U67 1;  2ERJ A;  1IW7 D;  4K9F A;  5AI2 A;  2A69 D;  2V3B B;  1WJV A;  4GS7 D;  2PPT A;  2XJU A;  3PIO 1;  5JVG 1;  1DX8 A;  4JAG A;  1B2J A;  1SMM A;  4AHZ A;  3P2A A;  3B08 B;  2HR5 A;  2C6B A;  5RXN A;  5AI3 A;  4JAD A;  2JI2 A;  3J7Z 1;  3RYG A;  4ZN3 B;  1YK4 A;  4JAE A;  4UY8 1;  1CAD A;  1SMU A;  3NFP I;  1R0H A;  4XGH A;  2KN9 A;  4LHL A;  1IU5 A;  2Z3Q B;  3ZG6 A;  1RYQ A;  4AHX A;  1RB9 A;  4AR5 A;  5H1S c;  1BFY A;  4V19 6;  1B2O A;  1B71 A;  2DSX A;  1S30 A;  1T9Q A;  1R0G A;  1RYT A;  1DVB A;  4AHW A;  1T9P A;  3PZA A;  5IY0 A;  1YUZ A;  4TVM A;  4POG A;  2XJS A;  2A6H D;  2XJQ A;  4ME3 A;  3WWL A;  5MLC 3;  1IRO A;  1ODH A;  1VZH A;  2A68 D;  2M6O A;  3LPE B;  2XJT A;  1NXE A;  5GAE c;  5GAD c;  2AYJ A;  5EIO C;  2PVE A;  3KYX A;  3MSU A;  4TPU A;  2K2D A;  1LKO A;  1NXG A;  2H12 A;  3J7Y 1;  2XJV A;  3P8B A;  3QQC E;  5MF6 A;  2PSM C;  2M6P A;  5DM7 1;  5GAH c;  1R0J A;  4AR3 A;  2ZIX A;  1BQ8 A;  1BQ9 A;  2JI1 A;  4B8C D;  3QVD A;  5AN9 H;  1YV1 A;  1E8J A;  7RXN A;  2CKA A;  2JI3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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