2PZZA

2.2 a resolution crystal structure of upf0201 protein from methanococcus jannaschii
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
133
structure length
133
Chain Sequence
LEVIIKAKVKPTEDKYKVKKAILNIFPKAKLTFIEKDNEFGEWEGKTKSVEKLKELLRSQSILDAARMVLEKGMTENATKFYLNKQAAYVGAVNFDIDTHGGIFVKILADENEDIMKIIKDIAPRTKGGVIIN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords UPF0201 protein MJ1564
publication title UPF201 archaeal specific family members reveal structural similarity to RNA-binding proteins but low likelihood for RNA-binding function.
pubmed doi rcsb
source organism Methanocaldococcus jannaschii dsm 2661
total genus 34
structure length 133
sequence length 133
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2007-05-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01877 RNA_binding RNA binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1440.10 Alpha Beta 2-Layer Sandwich 50s Ribosomal Protein L5; Chain: A, 50s Ribosomal Protein L5; Chain: A, 2pzzA01
3CCSD 4IOAD 1VQOD 3I55D 1VQ6D 1VQKD 1YJND 1S72D 2QEXD 1YITD 4WFAD 3DLLD 1KC8F 2QA4D 3G4SD 4WCED 5GAGF 3PIOD 1Q86F 3G71D 2OTJD 4WF9D 2ZJRD 1N8RF 3CF5D 1VQ4D 1W2BD 1YI2D 2OTLD 1M90F 2OGKA 5HL7D 1VQLD 1QVFD 4WFBD 1VQ7D 1VQ5D 3CCUD 5H1SH 1Q81F 1KQSD 1MJIA 3CCVD 2ZJPD 3CCED 3CC2D 1JJ2D 5JVHD 1Q7YF 3C9GA 3CMAD 1VQ8D 4IO9D 4WFND 3CCMD 5DM7D 1YIJD 1YJ9D 1K8AF 2ZJQD 1M1KF 3CC7D 3CCRD 1VQND 1VQMD 1IQ4A 1VQPD 5GAEF 3CCJD 1Q82F 3D7AA 3CCQD 3CXCD 4IOCD 1YHQD 1KD1F 3CC4D 3CCLD 3CD6D 5DM6D 1VQ9D 4U67D 3CPWD 2NWUA 3OW2D 3G6ED 3PIPD 1QVGD 3CMED 2WNYA 1K73F 5GAHF 2PZZA 5GADF 3J7ZF 4UY8F 5JVGD 1K9MF 1YJWD 5MLCG 2NRQA 3I56D 1NJIF
chains in the Genus database with same CATH superfamily
3CCSD 4IOAD 1VQOD 3I55D 1VQ6D 1VQKD 1YJND 1S72D 2QEXD 1YITD 4WFAD 3DLLD 1KC8F 2QA4D 3G4SD 4WCED 5GAGF 3PIOD 1Q86F 3G71D 2OTJD 4WF9D 2ZJRD 1N8RF 3CF5D 1VQ4D 1W2BD 1YI2D 2OTLD 1M90F 2OGKA 5HL7D 1VQLD 1QVFD 4WFBD 1VQ7D 1VQ5D 3CCUD 5H1SH 1Q81F 1KQSD 1MJIA 3CCVD 2ZJPD 3CCED 3CC2D 1JJ2D 5JVHD 1Q7YF 3C9GA 3CMAD 1VQ8D 4IO9D 4WFND 3CCMD 5DM7D 1YIJD 1YJ9D 1K8AF 2ZJQD 1M1KF 3CC7D 3CCRD 1VQND 1VQMD 1IQ4A 1VQPD 5GAEF 3CCJD 1Q82F 3D7AA 3CCQD 3CXCD 4IOCD 1YHQD 1KD1F 3CC4D 3CCLD 3CD6D 5DM6D 1VQ9D 4U67D 3CPWD 2NWUA 3OW2D 3G6ED 3PIPD 1QVGD 3CMED 2WNYA 1K73F 5GAHF 2PZZA 5GADF 3J7ZF 4UY8F 5JVGD 1K9MF 1YJWD 5MLCG 2NRQA 3I56D 1NJIF
chains in the Genus database with same CATH topology
3CCSD 4IOAD 1VQOD 3I55D 1VQ6D 1VQKD 1YJND 1S72D 2QEXD 1YITD 4WFAD 3DLLD 1KC8F 2QA4D 3G4SD 4WCED 5GAGF 3PIOD 1Q86F 3G71D 2OTJD 4WF9D 2ZJRD 1N8RF 3CF5D 1VQ4D 1W2BD 1YI2D 2OTLD 1M90F 2OGKA 5HL7D 1VQLD 1QVFD 4WFBD 1VQ7D 1VQ5D 3CCUD 5H1SH 1Q81F 1KQSD 1MJIA 3CCVD 2ZJPD 3CCED 3CC2D 1JJ2D 5JVHD 1Q7YF 3C9GA 3CMAD 1VQ8D 4IO9D 4WFND 3CCMD 5DM7D 1YIJD 1YJ9D 1K8AF 2ZJQD 1M1KF 3CC7D 3CCRD 1VQND 1VQMD 1IQ4A 1VQPD 5GAEF 3CCJD 1Q82F 3D7AA 3CCQD 3CXCD 4IOCD 1YHQD 1KD1F 3CC4D 3CCLD 3CD6D 5DM6D 1VQ9D 4U67D 3CPWD 2NWUA 3OW2D 3G6ED 3PIPD 1QVGD 3CMED 2WNYA 1K73F 5GAHF 2PZZA 5GADF 3J7ZF 4UY8F 5JVGD 1K9MF 1YJWD 5MLCG 2NRQA 3I56D 1NJIF
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CCS D;  4IOA D;  1VQO D;  3I55 D;  1VQ6 D;  1VQK D;  1YJN D;  1S72 D;  2QEX D;  1YIT D;  4WFA D;  3DLL D;  1KC8 F;  2QA4 D;  3G4S D;  4WCE D;  5GAG F;  3PIO D;  1Q86 F;  3G71 D;  2OTJ D;  4WF9 D;  2ZJR D;  1N8R F;  3CF5 D;  1VQ4 D;  1W2B D;  1YI2 D;  2OTL D;  1M90 F;  2OGK A;  5HL7 D;  1VQL D;  1QVF D;  4WFB D;  1VQ7 D;  1VQ5 D;  3CCU D;  5H1S H;  1Q81 F;  1KQS D;  1MJI A;  3CCV D;  2ZJP D;  3CCE D;  3CC2 D;  1JJ2 D;  5JVH D;  1Q7Y F;  3C9G A;  3CMA D;  1VQ8 D;  4IO9 D;  4WFN D;  3CCM D;  5DM7 D;  1YIJ D;  1YJ9 D;  1K8A F;  2ZJQ D;  1M1K F;  3CC7 D;  3CCR D;  1VQN D;  1VQM D;  1IQ4 A;  1VQP D;  5GAE F;  3CCJ D;  1Q82 F;  3D7A A;  3CCQ D;  3CXC D;  4IOC D;  1YHQ D;  1KD1 F;  3CC4 D;  3CCL D;  3CD6 D;  5DM6 D;  1VQ9 D;  4U67 D;  3CPW D;  2NWU A;  3OW2 D;  3G6E D;  3PIP D;  1QVG D;  3CME D;  2WNY A;  1K73 F;  5GAH F;  2PZZ A;  5GAD F;  3J7Z F;  4UY8 F;  5JVG D;  1K9M F;  1YJW D;  5MLC G;  2NRQ A;  3I56 D;  1NJI F; 
#chains in the Genus database with same CATH topology
 3CCS D;  4IOA D;  1VQO D;  3I55 D;  1VQ6 D;  1VQK D;  1YJN D;  1S72 D;  2QEX D;  1YIT D;  4WFA D;  3DLL D;  1KC8 F;  2QA4 D;  3G4S D;  4WCE D;  5GAG F;  3PIO D;  1Q86 F;  3G71 D;  2OTJ D;  4WF9 D;  2ZJR D;  1N8R F;  3CF5 D;  1VQ4 D;  1W2B D;  1YI2 D;  2OTL D;  1M90 F;  2OGK A;  5HL7 D;  1VQL D;  1QVF D;  4WFB D;  1VQ7 D;  1VQ5 D;  3CCU D;  5H1S H;  1Q81 F;  1KQS D;  1MJI A;  3CCV D;  2ZJP D;  3CCE D;  3CC2 D;  1JJ2 D;  5JVH D;  1Q7Y F;  3C9G A;  3CMA D;  1VQ8 D;  4IO9 D;  4WFN D;  3CCM D;  5DM7 D;  1YIJ D;  1YJ9 D;  1K8A F;  2ZJQ D;  1M1K F;  3CC7 D;  3CCR D;  1VQN D;  1VQM D;  1IQ4 A;  1VQP D;  5GAE F;  3CCJ D;  1Q82 F;  3D7A A;  3CCQ D;  3CXC D;  4IOC D;  1YHQ D;  1KD1 F;  3CC4 D;  3CCL D;  3CD6 D;  5DM6 D;  1VQ9 D;  4U67 D;  3CPW D;  2NWU A;  3OW2 D;  3G6E D;  3PIP D;  1QVG D;  3CME D;  2WNY A;  1K73 F;  5GAH F;  2PZZ A;  5GAD F;  3J7Z F;  4UY8 F;  5JVG D;  1K9M F;  1YJW D;  5MLC G;  2NRQ A;  3I56 D;  1NJI F; 
#chains in the Genus database with same CATH homology
 3CCS D;  4IOA D;  1VQO D;  3I55 D;  1VQ6 D;  1VQK D;  1YJN D;  1S72 D;  2QEX D;  1YIT D;  4WFA D;  3DLL D;  1KC8 F;  2QA4 D;  3G4S D;  4WCE D;  5GAG F;  3PIO D;  1Q86 F;  3G71 D;  2OTJ D;  4WF9 D;  2ZJR D;  1N8R F;  3CF5 D;  1VQ4 D;  1W2B D;  1YI2 D;  2OTL D;  1M90 F;  2OGK A;  5HL7 D;  1VQL D;  1QVF D;  4WFB D;  1VQ7 D;  1VQ5 D;  3CCU D;  5H1S H;  1Q81 F;  1KQS D;  1MJI A;  3CCV D;  2ZJP D;  3CCE D;  3CC2 D;  1JJ2 D;  5JVH D;  1Q7Y F;  3C9G A;  3CMA D;  1VQ8 D;  4IO9 D;  4WFN D;  3CCM D;  5DM7 D;  1YIJ D;  1YJ9 D;  1K8A F;  2ZJQ D;  1M1K F;  3CC7 D;  3CCR D;  1VQN D;  1VQM D;  1IQ4 A;  1VQP D;  5GAE F;  3CCJ D;  1Q82 F;  3D7A A;  3CCQ D;  3CXC D;  4IOC D;  1YHQ D;  1KD1 F;  3CC4 D;  3CCL D;  3CD6 D;  5DM6 D;  1VQ9 D;  4U67 D;  3CPW D;  2NWU A;  3OW2 D;  3G6E D;  3PIP D;  1QVG D;  3CME D;  2WNY A;  1K73 F;  5GAH F;  2PZZ A;  5GAD F;  3J7Z F;  4UY8 F;  5JVG D;  1K9M F;  1YJW D;  5MLC G;  2NRQ A;  3I56 D;  1NJI F; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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