2Q16A

Structure of the e. coli inosine triphosphate pyrophosphatase rgdb in complex with itp
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
197
structure length
197
Chain Sequence
MQKVVLATGNVGKVRELASLLSDFGLDIVAQTDLGVDSAEETGLTFIENAILKARHAAKVTALPAIADASGLAVDVLGGAPGIYSARYSGEDATDQKNLQKLLETMKDVPDDQRQARFHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIFFVPSEGKTAAELTREEKSAISHRGQALKLLLDALRNG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords HAM1 protein homolog
publication title Molecular basis of the antimutagenic activity of the house-cleaning inosine triphosphate pyrophosphatase RdgB from Escherichia coli.
pubmed doi rcsb
source organism Escherichia coli
total genus 59
structure length 197
sequence length 197
chains with identical sequence B
ec nomenclature ec 3.6.1.66: XTP/dITP diphosphatase.
pdb deposition date 2007-05-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01725 Ham1p_like Ham1 family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.950.10 Alpha Beta Alpha-Beta Complex Maf protein Maf protein 2q16A00
2DVPA 2I5DA 1VP2A 2PYUA 1U14A 2Q16A 2DVOA 1K7KA 3TQUA 2AMHA 4HEBA 2ZTIA 4BNQA 1ZWYA 2CARA 4JHCA 1EXCA 4LU1A 1U5WA 4OO0A 1ZNOA 1EX2A 4P0EA 2E5XA 1V7RA 3S86A 4P0UA 2P5XA 1B78A 2J4EA 2DVNA 4F95A 2MJPA
chains in the Genus database with same CATH superfamily
2DVPA 2I5DA 1VP2A 2A9SA 1U14A 2PYUA 2Q16A 2DVOA 1K7KA 4UUXA 3TQUA 4CTAB 2AMHA 4HEBA 2ZTIA 4BNQA 1ZWYA 2CARA 4JHCA 1EXCA 4LU1A 1U5WA 4OO0A 1ZNOA 5KVKA 1EX2A 4P0EA 4CT9A 4UUWA 2E5XA 1V7RA 3S86A 4P0UA 2P5XA 1B78A 2J4EA 5KOLA 2DVNA 4F95A 4UOCA 4CT8A 4CTAA 2MJPA
chains in the Genus database with same CATH topology
2DVPA 2I5DA 1VP2A 2PYUA 1U14A 2Q16A 2DVOA 1K7KA 3TQUA 2AMHA 4HEBA 2ZTIA 4BNQA 1ZWYA 2CARA 4JHCA 1EXCA 4LU1A 1U5WA 4OO0A 1ZNOA 1EX2A 4P0EA 2E5XA 1V7RA 3S86A 4P0UA 2P5XA 1B78A 2J4EA 2DVNA 4F95A 2MJPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DVP A;  2I5D A;  1VP2 A;  2PYU A;  1U14 A;  2Q16 A;  2DVO A;  1K7K A;  3TQU A;  2AMH A;  4HEB A;  2ZTI A;  4BNQ A;  1ZWY A;  2CAR A;  4JHC A;  1EXC A;  4LU1 A;  1U5W A;  4OO0 A;  1ZNO A;  1EX2 A;  4P0E A;  2E5X A;  1V7R A;  3S86 A;  4P0U A;  2P5X A;  1B78 A;  2J4E A;  2DVN A;  4F95 A;  2MJP A; 
#chains in the Genus database with same CATH topology
 2DVP A;  2I5D A;  1VP2 A;  2A9S A;  1U14 A;  2PYU A;  2Q16 A;  2DVO A;  1K7K A;  4UUX A;  3TQU A;  4CTA B;  2AMH A;  4HEB A;  2ZTI A;  4BNQ A;  1ZWY A;  2CAR A;  4JHC A;  1EXC A;  4LU1 A;  1U5W A;  4OO0 A;  1ZNO A;  5KVK A;  1EX2 A;  4P0E A;  4CT9 A;  4UUW A;  2E5X A;  1V7R A;  3S86 A;  4P0U A;  2P5X A;  1B78 A;  2J4E A;  5KOL A;  2DVN A;  4F95 A;  4UOC A;  4CT8 A;  4CTA A;  2MJP A; 
#chains in the Genus database with same CATH homology
 2DVP A;  2I5D A;  1VP2 A;  2PYU A;  1U14 A;  2Q16 A;  2DVO A;  1K7K A;  3TQU A;  2AMH A;  4HEB A;  2ZTI A;  4BNQ A;  1ZWY A;  2CAR A;  4JHC A;  1EXC A;  4LU1 A;  1U5W A;  4OO0 A;  1ZNO A;  1EX2 A;  4P0E A;  2E5X A;  1V7R A;  3S86 A;  4P0U A;  2P5X A;  1B78 A;  2J4E A;  2DVN A;  4F95 A;  2MJP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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