2Q18X

2-keto-3-deoxy-d-arabinonate dehydratase
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
291
structure length
282
Chain Sequence
MKLFRVVKRGYYISYAILDNSTIIRLDEDPIKALMRYSENKEVLGDRVTGIDYQSLLKSFQINDIRITKPIDPPEVWGSGISYENVAKILGKTIYEKVYDAVRPEIFFKATPNRCVGHGEAIAVRSDSEWTLPEPELAVVLDSNGKILGYTIMDDVSARDLEAENPLYLPQSKIYAGCCAFGPVIVTSDEIKNPYSLDITLKIVREGRVFFEGSVNTNKMRRKIEEQIQYLIRDNPIPDGTILTTGTAIVPGRDKGLKDEDIVEITISNIGTLITPVKKRRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 2-keto-3-deoxy-D-arabinonate dehydratase
publication title Structural insight into substrate binding and catalysis of a novel 2-keto-3-deoxy-D-arabinonate dehydratase illustrates common mechanistic features of the FAH superfamily.
pubmed doi rcsb
source organism Sulfolobus solfataricus
molecule tags Lyase
total genus 82
structure length 282
sequence length 291
ec nomenclature ec 4.2.1.141: 2-dehydro-3-deoxy-D-arabinonate dehydratase.
pdb deposition date 2007-05-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01557 FAA_hydrolase Fumarylacetoacetate (FAA) hydrolase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.330.40 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 2q18X01
3.90.850.10 Alpha Beta Alpha-Beta Complex Fumarylacetoacetate hydrolase; domain 2 Fumarylacetoacetase-like, C-terminal domain 2q18X02
5D2IA 2HZYA 1QCOA 1QQJA 1HYOA 2WQTA 2Q18X 3RR6A 1QCNA 1WZOA 3R6OA 5D2HA 4DBFA 3LZKA 2EB5A 4MAQA 5D2KA 4PFZA 5D2FA 4DBHA 1NKQA 1I7OA 2Q19X 3S52A 3QDFA 4QKUA 1GTTA 3BQBA 2EB4A 2EB6A 5D2GA 2Q1CX 2Q1DX 2DFUA 2Q1AX 1SV6A 3V77A 5D2JA 1NR9A 1SAWA
chains in the Genus database with same CATH superfamily
1WZOA 3HU3A 3QWZA 2EB5A 4MAQA 2QQSA 4KDIA 5D6WA 2YVLA 1O54A 2Q19X 5FTKA 4QKUA 5C1BA 2B25A 4ARCA 1QDNA 3QQ7A 4AQ7A 2MM2A 5FTJA 2DFUA 2Q1AX 5D2JA 1NR9A 2JV2A 5B6CA 1QQJA 4CQNA 1SAWA 3LGAA 5CCXA 3RR6A 3FPRA 3R6OA 5FTNA 1QCSA 1S3SA 2PWYA 3CF2A 2KY9A 3FPTA 4UC4A 2GF7A 2MM0A 3QC8A 4DBHA 3HU2A 1I7OA 3S52A 5D6XA 4KO8A 5FTMA 5D2GA 3ZGZA 3ZJTA 1R7RA 2Q1CX 2GFAA 5CD1A 1CR5A 2LW6A 2Q1DX 1SV6A 2HZYA 4RV0A 1I9GA 1ZC1A 4KLNA 2WQTA 3HU1A 1WLFA 3LZKA 1CZ4A 4ARIA 3ZJUA 5D2KA 5DYIA 5D2FA 1E32A 2YUJA 5CCBA 4KODA 3QDFA 4AS1A 4FIBA 2QQRA 3LHDA 3BQBA 2EB6A 5D6YA 1NKQA 5D2IA 4KDLA 1QCOA 1HYOA 2Q18X 1CZ5A 1QCNA 5D2HA 4DBFA 2PJHB 5EPPA 4PFZA 3ZJVA 2XDPA 3TIWA 3MB5A 5ERGB 5C18A 5DYGA 5FTLA 1GTTA 2EB4A 5GLFA 5EQJB 3V77A 3FPUA 3QQ8A
chains in the Genus database with same CATH topology
1WZOA 3HU3A 3QWZA 2EB5A 4MAQA 2QQSA 4KDIA 5D6WA 2YVLA 1O54A 2Q19X 5FTKA 4QKUA 5C1BA 2B25A 4ARCA 1QDNA 3QQ7A 4AQ7A 2MM2A 5FTJA 2DFUA 2Q1AX 5D2JA 1NR9A 2JV2A 5B6CA 1QQJA 4CQNA 1SAWA 3LGAA 5CCXA 3RR6A 3FPRA 3R6OA 5FTNA 1QCSA 1S3SA 2PWYA 3CF2A 2KY9A 3FPTA 4UC4A 2GF7A 2MM0A 3QC8A 4DBHA 3HU2A 1I7OA 3S52A 5D6XA 4KO8A 5FTMA 5D2GA 3ZGZA 3ZJTA 1R7RA 2Q1CX 2GFAA 5CD1A 1CR5A 2LW6A 2Q1DX 1SV6A 2HZYA 4RV0A 1I9GA 1ZC1A 4KLNA 2WQTA 3HU1A 1WLFA 3LZKA 1CZ4A 4ARIA 3ZJUA 5D2KA 5DYIA 5D2FA 1E32A 2YUJA 5CCBA 4KODA 3QDFA 4AS1A 4FIBA 2QQRA 3LHDA 3BQBA 2EB6A 5D6YA 1NKQA 5D2IA 4KDLA 1QCOA 1HYOA 2Q18X 1CZ5A 1QCNA 5D2HA 4DBFA 2PJHB 5EPPA 4PFZA 3ZJVA 2XDPA 3TIWA 3MB5A 5ERGB 5C18A 5DYGA 5FTLA 1GTTA 2EB4A 5GLFA 5EQJB 3V77A 3FPUA 3QQ8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5D2I A;  2HZY A;  1QCO A;  1QQJ A;  1HYO A;  2WQT A;  2Q18 X;  3RR6 A;  1QCN A;  1WZO A;  3R6O A;  5D2H A;  4DBF A;  3LZK A;  2EB5 A;  4MAQ A;  5D2K A;  4PFZ A;  5D2F A;  4DBH A;  1NKQ A;  1I7O A;  2Q19 X;  3S52 A;  3QDF A;  4QKU A;  1GTT A;  3BQB A;  2EB4 A;  2EB6 A;  5D2G A;  2Q1C X;  2Q1D X;  2DFU A;  2Q1A X;  1SV6 A;  3V77 A;  5D2J A;  1NR9 A;  1SAW A; 
#chains in the Genus database with same CATH topology
 1WZO A;  3HU3 A;  3QWZ A;  2EB5 A;  4MAQ A;  2QQS A;  4KDI A;  5D6W A;  2YVL A;  1O54 A;  2Q19 X;  5FTK A;  4QKU A;  5C1B A;  2B25 A;  4ARC A;  1QDN A;  3QQ7 A;  4AQ7 A;  2MM2 A;  5FTJ A;  2DFU A;  2Q1A X;  5D2J A;  1NR9 A;  2JV2 A;  5B6C A;  1QQJ A;  4CQN A;  1SAW A;  3LGA A;  5CCX A;  3RR6 A;  3FPR A;  3R6O A;  5FTN A;  1QCS A;  1S3S A;  2PWY A;  3CF2 A;  2KY9 A;  3FPT A;  4UC4 A;  2GF7 A;  2MM0 A;  3QC8 A;  4DBH A;  3HU2 A;  1I7O A;  3S52 A;  5D6X A;  4KO8 A;  5FTM A;  5D2G A;  3ZGZ A;  3ZJT A;  1R7R A;  2Q1C X;  2GFA A;  5CD1 A;  1CR5 A;  2LW6 A;  2Q1D X;  1SV6 A;  2HZY A;  4RV0 A;  1I9G A;  1ZC1 A;  4KLN A;  2WQT A;  3HU1 A;  1WLF A;  3LZK A;  1CZ4 A;  4ARI A;  3ZJU A;  5D2K A;  5DYI A;  5D2F A;  1E32 A;  2YUJ A;  5CCB A;  4KOD A;  3QDF A;  4AS1 A;  4FIB A;  2QQR A;  3LHD A;  3BQB A;  2EB6 A;  5D6Y A;  1NKQ A;  5D2I A;  4KDL A;  1QCO A;  1HYO A;  2Q18 X;  1CZ5 A;  1QCN A;  5D2H A;  4DBF A;  2PJH B;  5EPP A;  4PFZ A;  3ZJV A;  2XDP A;  3TIW A;  3MB5 A;  5ERG B;  5C18 A;  5DYG A;  5FTL A;  1GTT A;  2EB4 A;  5GLF A;  5EQJ B;  3V77 A;  3FPU A;  3QQ8 A; 
#chains in the Genus database with same CATH homology
 1WZO A;  3HU3 A;  3QWZ A;  2EB5 A;  4MAQ A;  2QQS A;  4KDI A;  5D6W A;  2YVL A;  1O54 A;  2Q19 X;  5FTK A;  4QKU A;  5C1B A;  2B25 A;  4ARC A;  1QDN A;  3QQ7 A;  4AQ7 A;  2MM2 A;  5FTJ A;  2DFU A;  2Q1A X;  5D2J A;  1NR9 A;  2JV2 A;  5B6C A;  1QQJ A;  4CQN A;  1SAW A;  3LGA A;  5CCX A;  3RR6 A;  3FPR A;  3R6O A;  5FTN A;  1QCS A;  1S3S A;  2PWY A;  3CF2 A;  2KY9 A;  3FPT A;  4UC4 A;  2GF7 A;  2MM0 A;  3QC8 A;  4DBH A;  3HU2 A;  1I7O A;  3S52 A;  5D6X A;  4KO8 A;  5FTM A;  5D2G A;  3ZGZ A;  3ZJT A;  1R7R A;  2Q1C X;  2GFA A;  5CD1 A;  1CR5 A;  2LW6 A;  2Q1D X;  1SV6 A;  2HZY A;  4RV0 A;  1I9G A;  1ZC1 A;  4KLN A;  2WQT A;  3HU1 A;  1WLF A;  3LZK A;  1CZ4 A;  4ARI A;  3ZJU A;  5D2K A;  5DYI A;  5D2F A;  1E32 A;  2YUJ A;  5CCB A;  4KOD A;  3QDF A;  4AS1 A;  4FIB A;  2QQR A;  3LHD A;  3BQB A;  2EB6 A;  5D6Y A;  1NKQ A;  5D2I A;  4KDL A;  1QCO A;  1HYO A;  2Q18 X;  1CZ5 A;  1QCN A;  5D2H A;  4DBF A;  2PJH B;  5EPP A;  4PFZ A;  3ZJV A;  2XDP A;  3TIW A;  3MB5 A;  5ERG B;  5C18 A;  5DYG A;  5FTL A;  1GTT A;  2EB4 A;  5GLF A;  5EQJ B;  3V77 A;  3FPU A;  3QQ8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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