2Q19X

2-keto-3-deoxy-d-arabinonate dehydratase apo form
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
291
structure length
282
Chain Sequence
MKLFRVVKRGYYISYAILDNSTIIRLDEDPIKALMRYSENKEVLGDRVTGIDYQSLLKSFQINDIRITKPIDPPEVWGSGISYEMVAKILGKTIYEKVYDAVRPEIFFKATPNRCVGHGEAIAVRSDSEWTLPEPELAVVLDSNGKILGYTIMDDVSARDLEAENPLYLPQSKIYAGCCAFGPVIVTSDEIKNPYSLDITLKIVREGRVFFEGSVNTNKMRRKIEEQIQYLIRDNPIPDGTILTTGTAIVPGRDKGLKDEDIVEITISNIGTLITPVKKRRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 2-keto-3-deoxy-D-arabinonate dehydratase
publication title Structural insight into substrate binding and catalysis of a novel 2-keto-3-deoxy-D-arabinonate dehydratase illustrates common mechanistic features of the FAH superfamily.
pubmed doi rcsb
source organism Sulfolobus solfataricus
molecule tags Lyase
total genus 76
structure length 282
sequence length 291
ec nomenclature ec 4.2.1.141: 2-dehydro-3-deoxy-D-arabinonate dehydratase.
pdb deposition date 2007-05-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01557 FAA_hydrolase Fumarylacetoacetate (FAA) hydrolase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.330.40 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 2q19X01
3.90.850.10 Alpha Beta Alpha-Beta Complex Fumarylacetoacetate hydrolase; domain 2 Fumarylacetoacetase-like, C-terminal domain 2q19X02
5D2JA 2Q1DX 5D2FA 2Q19X 1HYOA 1QCNA 2HZYA 3R6OA 1GTTA 1NR9A 4DBFA 2DFUA 5D2GA 2Q18X 2Q1CX 2Q1AX 3LZKA 4DBHA 1NKQA 5D2HA 1QQJA 2WQTA 4QKUA 1SV6A 2EB5A 3QDFA 4MAQA 1QCOA 4PFZA 5D2KA 5D2IA 2EB4A 1SAWA 3RR6A 3V77A 2EB6A 1I7OA 1WZOA 3S52A 3BQBA
chains in the Genus database with same CATH superfamily
2JV2A 1ZC1A 2YVLA 2YUJA 4ARIA 1HYOA 2QQRA 2Q18X 2Q1CX 3LZKA 4DBHA 1NKQA 4RV0A 5D6WA 3LGAA 4AS1A 1QQJA 1WLFA 4UC4A 4KO8A 2B25A 4QKUA 4MAQA 1E32A 3FPRA 1QCOA 2PJHB 3RR6A 5EPPA 5C18A 3HU3A 2XDPA 2QQSA 1O54A 3S52A 2EB4A 5D2JA 2KY9A 1QDNA 5GLFA 1CZ5A 3MB5A 5DYGA 5B6CA 3ZGZA 5FTLA 2MM2A 2Q19X 1QCNA 5FTKA 1GTTA 1NR9A 5D2GA 2LW6A 3QQ7A 5D6YA 3ZJTA 5EQJB 2PWYA 5D2HA 5CCBA 3FPUA 2EB5A 4FIBA 4KDLA 3V77A 1CZ4A 3HU1A 5C1BA 3ZJUA 1I9GA 1WZOA 4KLNA 3BQBA 5CCXA 3QQ8A 5D2FA 2HZYA 3LHDA 4KODA 4CQNA 4AQ7A 2DFUA 5FTNA 2GFAA 2MM0A 5CD1A 2Q1AX 3FPTA 3QC8A 2GF7A 2WQTA 1SV6A 3ZJVA 3QDFA 3QWZA 1I7OA 5FTMA 1CR5A 3HU2A 3TIWA 2Q1DX 3R6OA 4DBFA 5D6XA 5ERGB 4KDIA 4PFZA 5D2KA 5D2IA 1S3SA 1QCSA 1SAWA 4ARCA 3CF2A 2EB6A 1R7RA 5FTJA 5DYIA
chains in the Genus database with same CATH topology
2JV2A 1ZC1A 2YVLA 2YUJA 4ARIA 1HYOA 2QQRA 2Q18X 2Q1CX 3LZKA 4DBHA 1NKQA 4RV0A 5D6WA 3LGAA 4AS1A 1QQJA 1WLFA 4UC4A 4KO8A 2B25A 4QKUA 4MAQA 1E32A 3FPRA 1QCOA 2PJHB 3RR6A 5EPPA 5C18A 3HU3A 2XDPA 2QQSA 1O54A 3S52A 2EB4A 5D2JA 2KY9A 1QDNA 5GLFA 1CZ5A 3MB5A 5DYGA 5B6CA 3ZGZA 5FTLA 2MM2A 2Q19X 1QCNA 5FTKA 1GTTA 1NR9A 5D2GA 2LW6A 3QQ7A 5D6YA 3ZJTA 5EQJB 2PWYA 5D2HA 5CCBA 3FPUA 2EB5A 4FIBA 4KDLA 3V77A 1CZ4A 3HU1A 5C1BA 3ZJUA 1I9GA 1WZOA 4KLNA 3BQBA 5CCXA 3QQ8A 5D2FA 2HZYA 3LHDA 4KODA 4CQNA 4AQ7A 2DFUA 5FTNA 2GFAA 2MM0A 5CD1A 2Q1AX 3FPTA 3QC8A 2GF7A 2WQTA 1SV6A 3ZJVA 3QDFA 3QWZA 1I7OA 5FTMA 1CR5A 3HU2A 3TIWA 2Q1DX 3R6OA 4DBFA 5D6XA 5ERGB 4KDIA 4PFZA 5D2KA 5D2IA 1S3SA 1QCSA 1SAWA 4ARCA 3CF2A 2EB6A 1R7RA 5FTJA 5DYIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5D2J A;  2Q1D X;  5D2F A;  2Q19 X;  1HYO A;  1QCN A;  2HZY A;  3R6O A;  1GTT A;  1NR9 A;  4DBF A;  2DFU A;  5D2G A;  2Q18 X;  2Q1C X;  2Q1A X;  3LZK A;  4DBH A;  1NKQ A;  5D2H A;  1QQJ A;  2WQT A;  4QKU A;  1SV6 A;  2EB5 A;  3QDF A;  4MAQ A;  1QCO A;  4PFZ A;  5D2K A;  5D2I A;  2EB4 A;  1SAW A;  3RR6 A;  3V77 A;  2EB6 A;  1I7O A;  1WZO A;  3S52 A;  3BQB A; 
#chains in the Genus database with same CATH topology
 2JV2 A;  1ZC1 A;  2YVL A;  2YUJ A;  4ARI A;  1HYO A;  2QQR A;  2Q18 X;  2Q1C X;  3LZK A;  4DBH A;  1NKQ A;  4RV0 A;  5D6W A;  3LGA A;  4AS1 A;  1QQJ A;  1WLF A;  4UC4 A;  4KO8 A;  2B25 A;  4QKU A;  4MAQ A;  1E32 A;  3FPR A;  1QCO A;  2PJH B;  3RR6 A;  5EPP A;  5C18 A;  3HU3 A;  2XDP A;  2QQS A;  1O54 A;  3S52 A;  2EB4 A;  5D2J A;  2KY9 A;  1QDN A;  5GLF A;  1CZ5 A;  3MB5 A;  5DYG A;  5B6C A;  3ZGZ A;  5FTL A;  2MM2 A;  2Q19 X;  1QCN A;  5FTK A;  1GTT A;  1NR9 A;  5D2G A;  2LW6 A;  3QQ7 A;  5D6Y A;  3ZJT A;  5EQJ B;  2PWY A;  5D2H A;  5CCB A;  3FPU A;  2EB5 A;  4FIB A;  4KDL A;  3V77 A;  1CZ4 A;  3HU1 A;  5C1B A;  3ZJU A;  1I9G A;  1WZO A;  4KLN A;  3BQB A;  5CCX A;  3QQ8 A;  5D2F A;  2HZY A;  3LHD A;  4KOD A;  4CQN A;  4AQ7 A;  2DFU A;  5FTN A;  2GFA A;  2MM0 A;  5CD1 A;  2Q1A X;  3FPT A;  3QC8 A;  2GF7 A;  2WQT A;  1SV6 A;  3ZJV A;  3QDF A;  3QWZ A;  1I7O A;  5FTM A;  1CR5 A;  3HU2 A;  3TIW A;  2Q1D X;  3R6O A;  4DBF A;  5D6X A;  5ERG B;  4KDI A;  4PFZ A;  5D2K A;  5D2I A;  1S3S A;  1QCS A;  1SAW A;  4ARC A;  3CF2 A;  2EB6 A;  1R7R A;  5FTJ A;  5DYI A; 
#chains in the Genus database with same CATH homology
 2JV2 A;  1ZC1 A;  2YVL A;  2YUJ A;  4ARI A;  1HYO A;  2QQR A;  2Q18 X;  2Q1C X;  3LZK A;  4DBH A;  1NKQ A;  4RV0 A;  5D6W A;  3LGA A;  4AS1 A;  1QQJ A;  1WLF A;  4UC4 A;  4KO8 A;  2B25 A;  4QKU A;  4MAQ A;  1E32 A;  3FPR A;  1QCO A;  2PJH B;  3RR6 A;  5EPP A;  5C18 A;  3HU3 A;  2XDP A;  2QQS A;  1O54 A;  3S52 A;  2EB4 A;  5D2J A;  2KY9 A;  1QDN A;  5GLF A;  1CZ5 A;  3MB5 A;  5DYG A;  5B6C A;  3ZGZ A;  5FTL A;  2MM2 A;  2Q19 X;  1QCN A;  5FTK A;  1GTT A;  1NR9 A;  5D2G A;  2LW6 A;  3QQ7 A;  5D6Y A;  3ZJT A;  5EQJ B;  2PWY A;  5D2H A;  5CCB A;  3FPU A;  2EB5 A;  4FIB A;  4KDL A;  3V77 A;  1CZ4 A;  3HU1 A;  5C1B A;  3ZJU A;  1I9G A;  1WZO A;  4KLN A;  3BQB A;  5CCX A;  3QQ8 A;  5D2F A;  2HZY A;  3LHD A;  4KOD A;  4CQN A;  4AQ7 A;  2DFU A;  5FTN A;  2GFA A;  2MM0 A;  5CD1 A;  2Q1A X;  3FPT A;  3QC8 A;  2GF7 A;  2WQT A;  1SV6 A;  3ZJV A;  3QDF A;  3QWZ A;  1I7O A;  5FTM A;  1CR5 A;  3HU2 A;  3TIW A;  2Q1D X;  3R6O A;  4DBF A;  5D6X A;  5ERG B;  4KDI A;  4PFZ A;  5D2K A;  5D2I A;  1S3S A;  1QCS A;  1SAW A;  4ARC A;  3CF2 A;  2EB6 A;  1R7R A;  5FTJ A;  5DYI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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