2Q19X

2-keto-3-deoxy-d-arabinonate dehydratase apo form
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
291
structure length
282
Chain Sequence
MKLFRVVKRGYYISYAILDNSTIIRLDEDPIKALMRYSENKEVLGDRVTGIDYQSLLKSFQINDIRITKPIDPPEVWGSGISYEMVAKILGKTIYEKVYDAVRPEIFFKATPNRCVGHGEAIAVRSDSEWTLPEPELAVVLDSNGKILGYTIMDDVSARDLEAENPLYLPQSKIYAGCCAFGPVIVTSDEIKNPYSLDITLKIVREGRVFFEGSVNTNKMRRKIEEQIQYLIRDNPIPDGTILTTGTAIVPGRDKGLKDEDIVEITISNIGTLITPVKKRRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords 2-keto-3-deoxy-D-arabinonate dehydratase
publication title Structural insight into substrate binding and catalysis of a novel 2-keto-3-deoxy-D-arabinonate dehydratase illustrates common mechanistic features of the FAH superfamily.
pubmed doi rcsb
source organism Sulfolobus solfataricus
total genus 76
structure length 282
sequence length 291
ec nomenclature ec 4.2.1.141: 2-dehydro-3-deoxy-D-arabinonate dehydratase.
pdb deposition date 2007-05-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01557 FAA_hydrolase Fumarylacetoacetate (FAA) hydrolase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.330.40 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 2q19X01
3.90.850.10 Alpha Beta Alpha-Beta Complex Fumarylacetoacetate hydrolase; domain 2 Fumarylacetoacetase-like, C-terminal domain 2q19X02
5D2FA 4DBFA 3S52A 2Q1DX 1SAWA 5D2KA 2Q1CX 3LZKA 5D2JA 1NKQA 2EB6A 4QKUA 4MAQA 5D2IA 1NR9A 4PFZA 4DBHA 1QCOA 2EB5A 5D2GA 2Q19X 3RR6A 1SV6A 1HYOA 2Q18X 2EB4A 1QCNA 1GTTA 2WQTA 3QDFA 3R6OA 2Q1AX 2DFUA 1I7OA 1QQJA 3BQBA 2HZYA 3V77A 5D2HA 1WZOA
chains in the Genus database with same CATH superfamily
2JV2A 1I9GA 3CF2A 2EB5A 5D2GA 2GF7A 2Q19X 4ARIA 1ZC1A 2MM2A 5D6WA 4FIBA 1QCNA 4KLNA 3QDFA 5GLFA 2QQSA 5EPPA 2HZYA 5D6YA 3HU2A 1WZOA 2KY9A 3QWZA 5DYIA 1O54A 3FPTA 5D2KA 4KDLA 3LZKA 5D2JA 1QCSA 4MAQA 4PFZA 5FTKA 3MB5A 2QQRA 3ZJUA 4KDIA 5FTNA 2Q18X 1WLFA 1R7RA 2PWYA 5DYGA 2B25A 2EB4A 2PJHB 5CCBA 2DFUA 3BQBA 5B6CA 3QQ7A 4AS1A 4ARCA 5FTLA 5D2FA 3QQ8A 2Q1DX 1SAWA 2Q1CX 1CZ5A 1NKQA 5CD1A 5CCXA 5C1BA 3ZJTA 5D2IA 4DBHA 5ERGB 3LGAA 3HU3A 3ZJVA 1CZ4A 3FPUA 1S3SA 3QC8A 4AQ7A 2LW6A 1CR5A 5FTMA 4CQNA 2YVLA 3ZGZA 3R6OA 2Q1AX 5D6XA 3HU1A 3FPRA 5D2HA 5C18A 3LHDA 2MM0A 4DBFA 1E32A 3S52A 5FTJA 4KODA 2YUJA 2EB6A 4QKUA 1NR9A 1QCOA 1QDNA 2GFAA 4RV0A 5EQJB 4UC4A 3RR6A 1SV6A 1HYOA 3TIWA 1GTTA 2XDPA 2WQTA 4KO8A 1I7OA 1QQJA 3V77A
chains in the Genus database with same CATH topology
2JV2A 1I9GA 3CF2A 2EB5A 5D2GA 2GF7A 2Q19X 4ARIA 1ZC1A 2MM2A 5D6WA 4FIBA 1QCNA 4KLNA 3QDFA 5GLFA 2QQSA 5EPPA 2HZYA 5D6YA 3HU2A 1WZOA 2KY9A 3QWZA 5DYIA 1O54A 3FPTA 5D2KA 4KDLA 3LZKA 5D2JA 1QCSA 4MAQA 4PFZA 5FTKA 3MB5A 2QQRA 3ZJUA 4KDIA 5FTNA 2Q18X 1WLFA 1R7RA 2PWYA 5DYGA 2B25A 2EB4A 2PJHB 5CCBA 2DFUA 3BQBA 5B6CA 3QQ7A 4AS1A 4ARCA 5FTLA 5D2FA 3QQ8A 2Q1DX 1SAWA 2Q1CX 1CZ5A 1NKQA 5CD1A 5CCXA 5C1BA 3ZJTA 5D2IA 4DBHA 5ERGB 3LGAA 3HU3A 3ZJVA 1CZ4A 3FPUA 1S3SA 3QC8A 4AQ7A 2LW6A 1CR5A 5FTMA 4CQNA 2YVLA 3ZGZA 3R6OA 2Q1AX 5D6XA 3HU1A 3FPRA 5D2HA 5C18A 3LHDA 2MM0A 4DBFA 1E32A 3S52A 5FTJA 4KODA 2YUJA 2EB6A 4QKUA 1NR9A 1QCOA 1QDNA 2GFAA 4RV0A 5EQJB 4UC4A 3RR6A 1SV6A 1HYOA 3TIWA 1GTTA 2XDPA 2WQTA 4KO8A 1I7OA 1QQJA 3V77A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5D2F A;  4DBF A;  3S52 A;  2Q1D X;  1SAW A;  5D2K A;  2Q1C X;  3LZK A;  5D2J A;  1NKQ A;  2EB6 A;  4QKU A;  4MAQ A;  5D2I A;  1NR9 A;  4PFZ A;  4DBH A;  1QCO A;  2EB5 A;  5D2G A;  2Q19 X;  3RR6 A;  1SV6 A;  1HYO A;  2Q18 X;  2EB4 A;  1QCN A;  1GTT A;  2WQT A;  3QDF A;  3R6O A;  2Q1A X;  2DFU A;  1I7O A;  1QQJ A;  3BQB A;  2HZY A;  3V77 A;  5D2H A;  1WZO A; 
#chains in the Genus database with same CATH topology
 2JV2 A;  1I9G A;  3CF2 A;  2EB5 A;  5D2G A;  2GF7 A;  2Q19 X;  4ARI A;  1ZC1 A;  2MM2 A;  5D6W A;  4FIB A;  1QCN A;  4KLN A;  3QDF A;  5GLF A;  2QQS A;  5EPP A;  2HZY A;  5D6Y A;  3HU2 A;  1WZO A;  2KY9 A;  3QWZ A;  5DYI A;  1O54 A;  3FPT A;  5D2K A;  4KDL A;  3LZK A;  5D2J A;  1QCS A;  4MAQ A;  4PFZ A;  5FTK A;  3MB5 A;  2QQR A;  3ZJU A;  4KDI A;  5FTN A;  2Q18 X;  1WLF A;  1R7R A;  2PWY A;  5DYG A;  2B25 A;  2EB4 A;  2PJH B;  5CCB A;  2DFU A;  3BQB A;  5B6C A;  3QQ7 A;  4AS1 A;  4ARC A;  5FTL A;  5D2F A;  3QQ8 A;  2Q1D X;  1SAW A;  2Q1C X;  1CZ5 A;  1NKQ A;  5CD1 A;  5CCX A;  5C1B A;  3ZJT A;  5D2I A;  4DBH A;  5ERG B;  3LGA A;  3HU3 A;  3ZJV A;  1CZ4 A;  3FPU A;  1S3S A;  3QC8 A;  4AQ7 A;  2LW6 A;  1CR5 A;  5FTM A;  4CQN A;  2YVL A;  3ZGZ A;  3R6O A;  2Q1A X;  5D6X A;  3HU1 A;  3FPR A;  5D2H A;  5C18 A;  3LHD A;  2MM0 A;  4DBF A;  1E32 A;  3S52 A;  5FTJ A;  4KOD A;  2YUJ A;  2EB6 A;  4QKU A;  1NR9 A;  1QCO A;  1QDN A;  2GFA A;  4RV0 A;  5EQJ B;  4UC4 A;  3RR6 A;  1SV6 A;  1HYO A;  3TIW A;  1GTT A;  2XDP A;  2WQT A;  4KO8 A;  1I7O A;  1QQJ A;  3V77 A; 
#chains in the Genus database with same CATH homology
 2JV2 A;  1I9G A;  3CF2 A;  2EB5 A;  5D2G A;  2GF7 A;  2Q19 X;  4ARI A;  1ZC1 A;  2MM2 A;  5D6W A;  4FIB A;  1QCN A;  4KLN A;  3QDF A;  5GLF A;  2QQS A;  5EPP A;  2HZY A;  5D6Y A;  3HU2 A;  1WZO A;  2KY9 A;  3QWZ A;  5DYI A;  1O54 A;  3FPT A;  5D2K A;  4KDL A;  3LZK A;  5D2J A;  1QCS A;  4MAQ A;  4PFZ A;  5FTK A;  3MB5 A;  2QQR A;  3ZJU A;  4KDI A;  5FTN A;  2Q18 X;  1WLF A;  1R7R A;  2PWY A;  5DYG A;  2B25 A;  2EB4 A;  2PJH B;  5CCB A;  2DFU A;  3BQB A;  5B6C A;  3QQ7 A;  4AS1 A;  4ARC A;  5FTL A;  5D2F A;  3QQ8 A;  2Q1D X;  1SAW A;  2Q1C X;  1CZ5 A;  1NKQ A;  5CD1 A;  5CCX A;  5C1B A;  3ZJT A;  5D2I A;  4DBH A;  5ERG B;  3LGA A;  3HU3 A;  3ZJV A;  1CZ4 A;  3FPU A;  1S3S A;  3QC8 A;  4AQ7 A;  2LW6 A;  1CR5 A;  5FTM A;  4CQN A;  2YVL A;  3ZGZ A;  3R6O A;  2Q1A X;  5D6X A;  3HU1 A;  3FPR A;  5D2H A;  5C18 A;  3LHD A;  2MM0 A;  4DBF A;  1E32 A;  3S52 A;  5FTJ A;  4KOD A;  2YUJ A;  2EB6 A;  4QKU A;  1NR9 A;  1QCO A;  1QDN A;  2GFA A;  4RV0 A;  5EQJ B;  4UC4 A;  3RR6 A;  1SV6 A;  1HYO A;  3TIW A;  1GTT A;  2XDP A;  2WQT A;  4KO8 A;  1I7O A;  1QQJ A;  3V77 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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