2Q19X

2-keto-3-deoxy-d-arabinonate dehydratase apo form
Total Genus 76
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
76
sequence length
291
structure length
282
Chain Sequence
b'MKLFRVVKRGYYISYAILDNSTIIRLDEDPIKALMRYSENKEVLGDRVTGIDYQSLLKSFQINDIRITKPIDPPEVWGSGISYEMVAKILGKTIYEKVYDAVRPEIFFKATPNRCVGHGEAIAVRSDSEWTLPEPELAVVLDSNGKILGYTIMDDVSARDLEAENPLYLPQSKIYAGCCAFGPVIVTSDEIKNPYSLDITLKIVREGRVFFEGSVNTNKMRRKIEEQIQYLIRDNPIPDGTILTTGTAIVPGRDKGLKDEDIVEITISNIGTLITPVKKRRK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 2-keto-3-deoxy-D-arabinonate dehydratase
publication title Structural insight into substrate binding and catalysis of a novel 2-keto-3-deoxy-D-arabinonate dehydratase illustrates common mechanistic features of the FAH superfamily.
pubmed doi rcsb
source organism Sulfolobus solfataricus
molecule tags Lyase
total genus 76
structure length 282
sequence length 291
ec nomenclature ec 4.2.1.141: 2-dehydro-3-deoxy-D-arabinonate dehydratase.
pdb deposition date 2007-05-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01557 FAA_hydrolase Fumarylacetoacetate (FAA) hydrolase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.330.40 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 2q19X01
3.90.850.10 Alpha Beta Alpha-Beta Complex Fumarylacetoacetate hydrolase; domain 2 Fumarylacetoacetase-like, C-terminal domain 2q19X02
3V77A 4DBHA 4DBFA 3RR6A 1SAWA 2EB5A 2EB6A 3BQBA 3LZKA 4PFZA 2EB4A 2Q1AX 1GTTA 5D2KA 1QCNA 5D2HA 5D2GA 2Q18X 2HZYA 5D2FA 1NR9A 4QKUA 2Q19X 1QCOA 1SV6A 5D2JA 4MAQA 2Q1DX 2WQTA 3R6OA 1NKQA 2Q1CX 1HYOA 3QDFA 3S52A 1QQJA 1I7OA 2DFUA 1WZOA 5D2IA
chains in the Genus database with same CATH superfamily
2PJHB 5C1BA 4FIBA 3RR6A 1SAWA 4DBFA 2MM0A 3ZJVA 3LZKA 5D6YA 3LHDA 3ZJTA 1QCNA 5D2HA 5C18A 2HZYA 3FPRA 1CZ5A 4KODA 2Q1DX 5DYIA 3QDFA 1I9GA 5B6CA 1QDNA 5EQJB 1WZOA 2GFAA 2EB6A 4KO8A 5GLFA 1CR5A 4PFZA 5FTNA 2Q1AX 5D2KA 2XDPA 1ZC1A 5FTKA 1CZ4A 4ARIA 3CF2A 3HU1A 2QQRA 5D2FA 5D6XA 1QCOA 4MAQA 2PWYA 5D6WA 1NKQA 3QWZA 3LGAA 2DFUA 1E32A 2YVLA 5CCXA 3V77A 4DBHA 5FTLA 4KDLA 2EB4A 3ZJUA 2QQSA 5D2GA 5CD1A 4RV0A 3QQ8A 2Q19X 4KLNA 5DYGA 2Q1CX 3QQ7A 2MM2A 4AQ7A 1S3SA 1QQJA 1I7OA 2JV2A 4KDIA 1O54A 3MB5A 5FTJA 5FTMA 5D2IA 4AS1A 3HU2A 3TIWA 2EB5A 1R7RA 3BQBA 3ZGZA 3QC8A 4UC4A 1GTTA 5CCBA 2LW6A 3HU3A 5EPPA 2Q18X 3FPUA 5ERGB 1NR9A 4QKUA 5D2JA 1SV6A 2KY9A 2WQTA 3R6OA 2YUJA 1HYOA 4ARCA 1WLFA 3S52A 2B25A 2GF7A 3FPTA 1QCSA 4CQNA
chains in the Genus database with same CATH topology
2PJHB 5C1BA 4FIBA 3RR6A 1SAWA 4DBFA 2MM0A 3ZJVA 3LZKA 5D6YA 3LHDA 3ZJTA 1QCNA 5D2HA 5C18A 2HZYA 3FPRA 1CZ5A 4KODA 2Q1DX 5DYIA 3QDFA 1I9GA 5B6CA 1QDNA 5EQJB 1WZOA 2GFAA 2EB6A 4KO8A 5GLFA 1CR5A 4PFZA 5FTNA 2Q1AX 5D2KA 2XDPA 1ZC1A 5FTKA 1CZ4A 4ARIA 3CF2A 3HU1A 2QQRA 5D2FA 5D6XA 1QCOA 4MAQA 2PWYA 5D6WA 1NKQA 3QWZA 3LGAA 2DFUA 1E32A 2YVLA 5CCXA 3V77A 4DBHA 5FTLA 4KDLA 2EB4A 3ZJUA 2QQSA 5D2GA 5CD1A 4RV0A 3QQ8A 2Q19X 4KLNA 5DYGA 2Q1CX 3QQ7A 2MM2A 4AQ7A 1S3SA 1QQJA 1I7OA 2JV2A 4KDIA 1O54A 3MB5A 5FTJA 5FTMA 5D2IA 4AS1A 3HU2A 3TIWA 2EB5A 1R7RA 3BQBA 3ZGZA 3QC8A 4UC4A 1GTTA 5CCBA 2LW6A 3HU3A 5EPPA 2Q18X 3FPUA 5ERGB 1NR9A 4QKUA 5D2JA 1SV6A 2KY9A 2WQTA 3R6OA 2YUJA 1HYOA 4ARCA 1WLFA 3S52A 2B25A 2GF7A 3FPTA 1QCSA 4CQNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3V77 A;  4DBH A;  4DBF A;  3RR6 A;  1SAW A;  2EB5 A;  2EB6 A;  3BQB A;  3LZK A;  4PFZ A;  2EB4 A;  2Q1A X;  1GTT A;  5D2K A;  1QCN A;  5D2H A;  5D2G A;  2Q18 X;  2HZY A;  5D2F A;  1NR9 A;  4QKU A;  2Q19 X;  1QCO A;  1SV6 A;  5D2J A;  4MAQ A;  2Q1D X;  2WQT A;  3R6O A;  1NKQ A;  2Q1C X;  1HYO A;  3QDF A;  3S52 A;  1QQJ A;  1I7O A;  2DFU A;  1WZO A;  5D2I A; 
#chains in the Genus database with same CATH topology
 2PJH B;  5C1B A;  4FIB A;  3RR6 A;  1SAW A;  4DBF A;  2MM0 A;  3ZJV A;  3LZK A;  5D6Y A;  3LHD A;  3ZJT A;  1QCN A;  5D2H A;  5C18 A;  2HZY A;  3FPR A;  1CZ5 A;  4KOD A;  2Q1D X;  5DYI A;  3QDF A;  1I9G A;  5B6C A;  1QDN A;  5EQJ B;  1WZO A;  2GFA A;  2EB6 A;  4KO8 A;  5GLF A;  1CR5 A;  4PFZ A;  5FTN A;  2Q1A X;  5D2K A;  2XDP A;  1ZC1 A;  5FTK A;  1CZ4 A;  4ARI A;  3CF2 A;  3HU1 A;  2QQR A;  5D2F A;  5D6X A;  1QCO A;  4MAQ A;  2PWY A;  5D6W A;  1NKQ A;  3QWZ A;  3LGA A;  2DFU A;  1E32 A;  2YVL A;  5CCX A;  3V77 A;  4DBH A;  5FTL A;  4KDL A;  2EB4 A;  3ZJU A;  2QQS A;  5D2G A;  5CD1 A;  4RV0 A;  3QQ8 A;  2Q19 X;  4KLN A;  5DYG A;  2Q1C X;  3QQ7 A;  2MM2 A;  4AQ7 A;  1S3S A;  1QQJ A;  1I7O A;  2JV2 A;  4KDI A;  1O54 A;  3MB5 A;  5FTJ A;  5FTM A;  5D2I A;  4AS1 A;  3HU2 A;  3TIW A;  2EB5 A;  1R7R A;  3BQB A;  3ZGZ A;  3QC8 A;  4UC4 A;  1GTT A;  5CCB A;  2LW6 A;  3HU3 A;  5EPP A;  2Q18 X;  3FPU A;  5ERG B;  1NR9 A;  4QKU A;  5D2J A;  1SV6 A;  2KY9 A;  2WQT A;  3R6O A;  2YUJ A;  1HYO A;  4ARC A;  1WLF A;  3S52 A;  2B25 A;  2GF7 A;  3FPT A;  1QCS A;  4CQN A; 
#chains in the Genus database with same CATH homology
 2PJH B;  5C1B A;  4FIB A;  3RR6 A;  1SAW A;  4DBF A;  2MM0 A;  3ZJV A;  3LZK A;  5D6Y A;  3LHD A;  3ZJT A;  1QCN A;  5D2H A;  5C18 A;  2HZY A;  3FPR A;  1CZ5 A;  4KOD A;  2Q1D X;  5DYI A;  3QDF A;  1I9G A;  5B6C A;  1QDN A;  5EQJ B;  1WZO A;  2GFA A;  2EB6 A;  4KO8 A;  5GLF A;  1CR5 A;  4PFZ A;  5FTN A;  2Q1A X;  5D2K A;  2XDP A;  1ZC1 A;  5FTK A;  1CZ4 A;  4ARI A;  3CF2 A;  3HU1 A;  2QQR A;  5D2F A;  5D6X A;  1QCO A;  4MAQ A;  2PWY A;  5D6W A;  1NKQ A;  3QWZ A;  3LGA A;  2DFU A;  1E32 A;  2YVL A;  5CCX A;  3V77 A;  4DBH A;  5FTL A;  4KDL A;  2EB4 A;  3ZJU A;  2QQS A;  5D2G A;  5CD1 A;  4RV0 A;  3QQ8 A;  2Q19 X;  4KLN A;  5DYG A;  2Q1C X;  3QQ7 A;  2MM2 A;  4AQ7 A;  1S3S A;  1QQJ A;  1I7O A;  2JV2 A;  4KDI A;  1O54 A;  3MB5 A;  5FTJ A;  5FTM A;  5D2I A;  4AS1 A;  3HU2 A;  3TIW A;  2EB5 A;  1R7R A;  3BQB A;  3ZGZ A;  3QC8 A;  4UC4 A;  1GTT A;  5CCB A;  2LW6 A;  3HU3 A;  5EPP A;  2Q18 X;  3FPU A;  5ERG B;  1NR9 A;  4QKU A;  5D2J A;  1SV6 A;  2KY9 A;  2WQT A;  3R6O A;  2YUJ A;  1HYO A;  4ARC A;  1WLF A;  3S52 A;  2B25 A;  2GF7 A;  3FPT A;  1QCS A;  4CQN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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