2Q1AX

2-keto-3-deoxy-d-arabinonate dehydratase complexed with magnesium and 2-oxobutyrate
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
291
structure length
291
Chain Sequence
b'MKLFRVVKRGYYISYAILDNSTIIRLDEDPIKALMRYSENKEVLGDRVTGIDYQSLLKSFQINDIRITKPIDPPEVWGSGISYEMARERYSEENVAKILGKTIYEKVYDAVRPEIFFKATPNRCVGHGEAIAVRSDSEWTLPEPELAVVLDSNGKILGYTIMDDVSARDLEAENPLYLPQSKIYAGCCAFGPVIVTSDEIKNPYSLDITLKIVREGRVFFEGSVNTNKMRRKIEEQIQYLIRDNPIPDGTILTTGTAIVPGRDKGLKDEDIVEITISNIGTLITPVKKRRK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 2-keto-3-deoxy-D-arabinonate dehydratase
publication title Structural insight into substrate binding and catalysis of a novel 2-keto-3-deoxy-D-arabinonate dehydratase illustrates common mechanistic features of the FAH superfamily.
pubmed doi rcsb
source organism Sulfolobus solfataricus
molecule tags Lyase
total genus 79
structure length 291
sequence length 291
ec nomenclature ec 4.2.1.141: 2-dehydro-3-deoxy-D-arabinonate dehydratase.
pdb deposition date 2007-05-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01557 FAA_hydrolase Fumarylacetoacetate (FAA) hydrolase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.330.40 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 2q1aX01
3.90.850.10 Alpha Beta Alpha-Beta Complex Fumarylacetoacetate hydrolase; domain 2 Fumarylacetoacetase-like, C-terminal domain 2q1aX02
2Q1CX 2DFUA 4DBFA 2EB6A 1QQJA 4PFZA 5D2GA 1QCNA 1SAWA 2WQTA 4QKUA 2Q1AX 3R6OA 5D2KA 3S52A 1QCOA 5D2HA 3V77A 1HYOA 4MAQA 1NR9A 1GTTA 2Q19X 2Q18X 2EB4A 5D2FA 4DBHA 1SV6A 2Q1DX 1NKQA 1I7OA 5D2IA 3BQBA 1WZOA 2HZYA 3RR6A 3LZKA 5D2JA 3QDFA 2EB5A
chains in the Genus database with same CATH superfamily
5FTNA 4CQNA 1QDNA 2DFUA 2EB6A 4RV0A 4ARIA 4QKUA 2LW6A 2Q1AX 1E32A 5EPPA 5D2HA 4MAQA 1NR9A 2Q19X 4KDLA 5GLFA 1NKQA 1I7OA 2MM0A 5FTJA 3QDFA 2EB5A 5D6WA 3QWZA 4DBFA 5DYGA 2QQRA 3LGAA 3QC8A 2MM2A 1I9GA 1S3SA 1QCOA 5FTLA 5CCXA 3ZGZA 5D2FA 1SV6A 4KLNA 4ARCA 4KDIA 1ZC1A 5CD1A 4FIBA 2HZYA 3RR6A 2GF7A 3LZKA 5D6XA 5D2JA 5FTKA 3HU3A 1CZ5A 2Q1CX 2YVLA 3FPTA 3HU1A 3ZJUA 1QQJA 4PFZA 1SAWA 5D2KA 3ZJTA 3S52A 5EQJB 1HYOA 1GTTA 2EB4A 2GFAA 2B25A 4DBHA 4UC4A 2Q1DX 5CCBA 3TIWA 5D6YA 3QQ8A 4KODA 1WZOA 5C18A 5DYIA 2JV2A 1WLFA 2YUJA 4AQ7A 3HU2A 1QCSA 5B6CA 3LHDA 3CF2A 5D2GA 1QCNA 2WQTA 2PJHB 1O54A 2XDPA 3R6OA 1R7RA 4KO8A 3FPUA 3V77A 4AS1A 3QQ7A 5ERGB 5FTMA 3ZJVA 1CR5A 5C1BA 5D2IA 2KY9A 3BQBA 2QQSA 2PWYA 1CZ4A 3FPRA 2Q18X 3MB5A
chains in the Genus database with same CATH topology
5FTNA 4CQNA 1QDNA 2DFUA 2EB6A 4RV0A 4ARIA 4QKUA 2LW6A 2Q1AX 1E32A 5EPPA 5D2HA 4MAQA 1NR9A 2Q19X 4KDLA 5GLFA 1NKQA 1I7OA 2MM0A 5FTJA 3QDFA 2EB5A 5D6WA 3QWZA 4DBFA 5DYGA 2QQRA 3LGAA 3QC8A 2MM2A 1I9GA 1S3SA 1QCOA 5FTLA 5CCXA 3ZGZA 5D2FA 1SV6A 4KLNA 4ARCA 4KDIA 1ZC1A 5CD1A 4FIBA 2HZYA 3RR6A 2GF7A 3LZKA 5D6XA 5D2JA 5FTKA 3HU3A 1CZ5A 2Q1CX 2YVLA 3FPTA 3HU1A 3ZJUA 1QQJA 4PFZA 1SAWA 5D2KA 3ZJTA 3S52A 5EQJB 1HYOA 1GTTA 2EB4A 2GFAA 2B25A 4DBHA 4UC4A 2Q1DX 5CCBA 3TIWA 5D6YA 3QQ8A 4KODA 1WZOA 5C18A 5DYIA 2JV2A 1WLFA 2YUJA 4AQ7A 3HU2A 1QCSA 5B6CA 3LHDA 3CF2A 5D2GA 1QCNA 2WQTA 2PJHB 1O54A 2XDPA 3R6OA 1R7RA 4KO8A 3FPUA 3V77A 4AS1A 3QQ7A 5ERGB 5FTMA 3ZJVA 1CR5A 5C1BA 5D2IA 2KY9A 3BQBA 2QQSA 2PWYA 1CZ4A 3FPRA 2Q18X 3MB5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Q1C X;  2DFU A;  4DBF A;  2EB6 A;  1QQJ A;  4PFZ A;  5D2G A;  1QCN A;  1SAW A;  2WQT A;  4QKU A;  2Q1A X;  3R6O A;  5D2K A;  3S52 A;  1QCO A;  5D2H A;  3V77 A;  1HYO A;  4MAQ A;  1NR9 A;  1GTT A;  2Q19 X;  2Q18 X;  2EB4 A;  5D2F A;  4DBH A;  1SV6 A;  2Q1D X;  1NKQ A;  1I7O A;  5D2I A;  3BQB A;  1WZO A;  2HZY A;  3RR6 A;  3LZK A;  5D2J A;  3QDF A;  2EB5 A; 
#chains in the Genus database with same CATH topology
 5FTN A;  4CQN A;  1QDN A;  2DFU A;  2EB6 A;  4RV0 A;  4ARI A;  4QKU A;  2LW6 A;  2Q1A X;  1E32 A;  5EPP A;  5D2H A;  4MAQ A;  1NR9 A;  2Q19 X;  4KDL A;  5GLF A;  1NKQ A;  1I7O A;  2MM0 A;  5FTJ A;  3QDF A;  2EB5 A;  5D6W A;  3QWZ A;  4DBF A;  5DYG A;  2QQR A;  3LGA A;  3QC8 A;  2MM2 A;  1I9G A;  1S3S A;  1QCO A;  5FTL A;  5CCX A;  3ZGZ A;  5D2F A;  1SV6 A;  4KLN A;  4ARC A;  4KDI A;  1ZC1 A;  5CD1 A;  4FIB A;  2HZY A;  3RR6 A;  2GF7 A;  3LZK A;  5D6X A;  5D2J A;  5FTK A;  3HU3 A;  1CZ5 A;  2Q1C X;  2YVL A;  3FPT A;  3HU1 A;  3ZJU A;  1QQJ A;  4PFZ A;  1SAW A;  5D2K A;  3ZJT A;  3S52 A;  5EQJ B;  1HYO A;  1GTT A;  2EB4 A;  2GFA A;  2B25 A;  4DBH A;  4UC4 A;  2Q1D X;  5CCB A;  3TIW A;  5D6Y A;  3QQ8 A;  4KOD A;  1WZO A;  5C18 A;  5DYI A;  2JV2 A;  1WLF A;  2YUJ A;  4AQ7 A;  3HU2 A;  1QCS A;  5B6C A;  3LHD A;  3CF2 A;  5D2G A;  1QCN A;  2WQT A;  2PJH B;  1O54 A;  2XDP A;  3R6O A;  1R7R A;  4KO8 A;  3FPU A;  3V77 A;  4AS1 A;  3QQ7 A;  5ERG B;  5FTM A;  3ZJV A;  1CR5 A;  5C1B A;  5D2I A;  2KY9 A;  3BQB A;  2QQS A;  2PWY A;  1CZ4 A;  3FPR A;  2Q18 X;  3MB5 A; 
#chains in the Genus database with same CATH homology
 5FTN A;  4CQN A;  1QDN A;  2DFU A;  2EB6 A;  4RV0 A;  4ARI A;  4QKU A;  2LW6 A;  2Q1A X;  1E32 A;  5EPP A;  5D2H A;  4MAQ A;  1NR9 A;  2Q19 X;  4KDL A;  5GLF A;  1NKQ A;  1I7O A;  2MM0 A;  5FTJ A;  3QDF A;  2EB5 A;  5D6W A;  3QWZ A;  4DBF A;  5DYG A;  2QQR A;  3LGA A;  3QC8 A;  2MM2 A;  1I9G A;  1S3S A;  1QCO A;  5FTL A;  5CCX A;  3ZGZ A;  5D2F A;  1SV6 A;  4KLN A;  4ARC A;  4KDI A;  1ZC1 A;  5CD1 A;  4FIB A;  2HZY A;  3RR6 A;  2GF7 A;  3LZK A;  5D6X A;  5D2J A;  5FTK A;  3HU3 A;  1CZ5 A;  2Q1C X;  2YVL A;  3FPT A;  3HU1 A;  3ZJU A;  1QQJ A;  4PFZ A;  1SAW A;  5D2K A;  3ZJT A;  3S52 A;  5EQJ B;  1HYO A;  1GTT A;  2EB4 A;  2GFA A;  2B25 A;  4DBH A;  4UC4 A;  2Q1D X;  5CCB A;  3TIW A;  5D6Y A;  3QQ8 A;  4KOD A;  1WZO A;  5C18 A;  5DYI A;  2JV2 A;  1WLF A;  2YUJ A;  4AQ7 A;  3HU2 A;  1QCS A;  5B6C A;  3LHD A;  3CF2 A;  5D2G A;  1QCN A;  2WQT A;  2PJH B;  1O54 A;  2XDP A;  3R6O A;  1R7R A;  4KO8 A;  3FPU A;  3V77 A;  4AS1 A;  3QQ7 A;  5ERG B;  5FTM A;  3ZJV A;  1CR5 A;  5C1B A;  5D2I A;  2KY9 A;  3BQB A;  2QQS A;  2PWY A;  1CZ4 A;  3FPR A;  2Q18 X;  3MB5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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