2Q1DX

2-keto-3-deoxy-d-arabinonate dehydratase complexed with magnesium and 2,5-dioxopentanoate
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
291
structure length
281
Chain Sequence
MKLFRVVKRGYYISYAILDNSTIIRLDEDPIKALMRYSENKEVLGDRVTGIDYQSLLKSFQINDIRITKPIDPPEVWGSGISYNVAKILGKTIYEKVYDAVRPEIFFKATPNRCVGHGEAIAVRSDSEWTLPEPELAVVLDSNGKILGYTIMDDVSARDLEAENPLYLPQSKIYAGCCAFGPVIVTSDEIKNPYSLDITLKIVREGRVFFEGSVNTNKMRRKIEEQIQYLIRDNPIPDGTILTTGTAIVPGRDKGLKDEDIVEITISNIGTLITPVKKRRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 2-keto-3-deoxy-D-arabinonate dehydratase
publication title Structural insight into substrate binding and catalysis of a novel 2-keto-3-deoxy-D-arabinonate dehydratase illustrates common mechanistic features of the FAH superfamily.
pubmed doi rcsb
source organism Sulfolobus solfataricus
molecule tags Lyase
total genus 80
structure length 281
sequence length 291
ec nomenclature ec 4.2.1.141: 2-dehydro-3-deoxy-D-arabinonate dehydratase.
pdb deposition date 2007-05-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01557 FAA_hydrolase Fumarylacetoacetate (FAA) hydrolase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.330.40 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 2q1dX01
3.90.850.10 Alpha Beta Alpha-Beta Complex Fumarylacetoacetate hydrolase; domain 2 Fumarylacetoacetase-like, C-terminal domain 2q1dX02
2Q1DX 3BQBA 2EB4A 3V77A 3S52A 2Q1AX 5D2KA 2WQTA 5D2IA 5D2HA 4MAQA 3R6OA 4DBFA 2Q19X 1NKQA 1QCOA 4PFZA 2HZYA 5D2GA 1GTTA 2EB5A 3QDFA 2Q1CX 5D2FA 2EB6A 4QKUA 1NR9A 1SV6A 1QCNA 3LZKA 5D2JA 1I7OA 1HYOA 4DBHA 1SAWA 1QQJA 1WZOA 3RR6A 2Q18X 2DFUA
chains in the Genus database with same CATH superfamily
3BQBA 4FIBA 5FTLA 5D6WA 3TIWA 5CCXA 2JV2A 2Q1AX 3FPRA 5B6CA 5D2IA 2PJHB 4MAQA 3FPTA 3R6OA 2Q19X 4KDIA 2YVLA 4KDLA 2EB5A 2LW6A 5ERGB 5C1BA 2EB6A 5DYIA 1NR9A 1SV6A 3HU3A 1QCNA 3LZKA 3FPUA 1I7OA 1HYOA 5FTMA 3ZJUA 5GLFA 1R7RA 5D6XA 5CD1A 2GFAA 5D2HA 4PFZA 2QQRA 5D2GA 3QDFA 2YUJA 5EQJB 1I9GA 5EPPA 2QQSA 3HU2A 5C18A 3QC8A 2B25A 4KODA 1QQJA 1WLFA 4AQ7A 2Q18X 1CZ4A 2Q1DX 2EB4A 3V77A 3S52A 2WQTA 2PWYA 1QCSA 1CR5A 4RV0A 3CF2A 1QCOA 4DBFA 5CCBA 4CQNA 2Q1CX 4KO8A 4ARIA 5D6YA 5D2FA 3ZGZA 4ARCA 4QKUA 2GF7A 4AS1A 4UC4A 1ZC1A 5FTKA 3QQ8A 3QQ7A 3LHDA 1E32A 1S3SA 3ZJVA 2KY9A 3LGAA 2DFUA 1QDNA 5FTNA 5D2KA 3QWZA 3MB5A 3HU1A 1NKQA 2HZYA 5FTJA 1GTTA 4KLNA 2XDPA 2MM0A 1O54A 5DYGA 1CZ5A 5D2JA 2MM2A 4DBHA 1SAWA 3ZJTA 1WZOA 3RR6A
chains in the Genus database with same CATH topology
3BQBA 4FIBA 5FTLA 5D6WA 3TIWA 5CCXA 2JV2A 2Q1AX 3FPRA 5B6CA 5D2IA 2PJHB 4MAQA 3FPTA 3R6OA 2Q19X 4KDIA 2YVLA 4KDLA 2EB5A 2LW6A 5ERGB 5C1BA 2EB6A 5DYIA 1NR9A 1SV6A 3HU3A 1QCNA 3LZKA 3FPUA 1I7OA 1HYOA 5FTMA 3ZJUA 5GLFA 1R7RA 5D6XA 5CD1A 2GFAA 5D2HA 4PFZA 2QQRA 5D2GA 3QDFA 2YUJA 5EQJB 1I9GA 5EPPA 2QQSA 3HU2A 5C18A 3QC8A 2B25A 4KODA 1QQJA 1WLFA 4AQ7A 2Q18X 1CZ4A 2Q1DX 2EB4A 3V77A 3S52A 2WQTA 2PWYA 1QCSA 1CR5A 4RV0A 3CF2A 1QCOA 4DBFA 5CCBA 4CQNA 2Q1CX 4KO8A 4ARIA 5D6YA 5D2FA 3ZGZA 4ARCA 4QKUA 2GF7A 4AS1A 4UC4A 1ZC1A 5FTKA 3QQ8A 3QQ7A 3LHDA 1E32A 1S3SA 3ZJVA 2KY9A 3LGAA 2DFUA 1QDNA 5FTNA 5D2KA 3QWZA 3MB5A 3HU1A 1NKQA 2HZYA 5FTJA 1GTTA 4KLNA 2XDPA 2MM0A 1O54A 5DYGA 1CZ5A 5D2JA 2MM2A 4DBHA 1SAWA 3ZJTA 1WZOA 3RR6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Q1D X;  3BQB A;  2EB4 A;  3V77 A;  3S52 A;  2Q1A X;  5D2K A;  2WQT A;  5D2I A;  5D2H A;  4MAQ A;  3R6O A;  4DBF A;  2Q19 X;  1NKQ A;  1QCO A;  4PFZ A;  2HZY A;  5D2G A;  1GTT A;  2EB5 A;  3QDF A;  2Q1C X;  5D2F A;  2EB6 A;  4QKU A;  1NR9 A;  1SV6 A;  1QCN A;  3LZK A;  5D2J A;  1I7O A;  1HYO A;  4DBH A;  1SAW A;  1QQJ A;  1WZO A;  3RR6 A;  2Q18 X;  2DFU A; 
#chains in the Genus database with same CATH topology
 3BQB A;  4FIB A;  5FTL A;  5D6W A;  3TIW A;  5CCX A;  2JV2 A;  2Q1A X;  3FPR A;  5B6C A;  5D2I A;  2PJH B;  4MAQ A;  3FPT A;  3R6O A;  2Q19 X;  4KDI A;  2YVL A;  4KDL A;  2EB5 A;  2LW6 A;  5ERG B;  5C1B A;  2EB6 A;  5DYI A;  1NR9 A;  1SV6 A;  3HU3 A;  1QCN A;  3LZK A;  3FPU A;  1I7O A;  1HYO A;  5FTM A;  3ZJU A;  5GLF A;  1R7R A;  5D6X A;  5CD1 A;  2GFA A;  5D2H A;  4PFZ A;  2QQR A;  5D2G A;  3QDF A;  2YUJ A;  5EQJ B;  1I9G A;  5EPP A;  2QQS A;  3HU2 A;  5C18 A;  3QC8 A;  2B25 A;  4KOD A;  1QQJ A;  1WLF A;  4AQ7 A;  2Q18 X;  1CZ4 A;  2Q1D X;  2EB4 A;  3V77 A;  3S52 A;  2WQT A;  2PWY A;  1QCS A;  1CR5 A;  4RV0 A;  3CF2 A;  1QCO A;  4DBF A;  5CCB A;  4CQN A;  2Q1C X;  4KO8 A;  4ARI A;  5D6Y A;  5D2F A;  3ZGZ A;  4ARC A;  4QKU A;  2GF7 A;  4AS1 A;  4UC4 A;  1ZC1 A;  5FTK A;  3QQ8 A;  3QQ7 A;  3LHD A;  1E32 A;  1S3S A;  3ZJV A;  2KY9 A;  3LGA A;  2DFU A;  1QDN A;  5FTN A;  5D2K A;  3QWZ A;  3MB5 A;  3HU1 A;  1NKQ A;  2HZY A;  5FTJ A;  1GTT A;  4KLN A;  2XDP A;  2MM0 A;  1O54 A;  5DYG A;  1CZ5 A;  5D2J A;  2MM2 A;  4DBH A;  1SAW A;  3ZJT A;  1WZO A;  3RR6 A; 
#chains in the Genus database with same CATH homology
 3BQB A;  4FIB A;  5FTL A;  5D6W A;  3TIW A;  5CCX A;  2JV2 A;  2Q1A X;  3FPR A;  5B6C A;  5D2I A;  2PJH B;  4MAQ A;  3FPT A;  3R6O A;  2Q19 X;  4KDI A;  2YVL A;  4KDL A;  2EB5 A;  2LW6 A;  5ERG B;  5C1B A;  2EB6 A;  5DYI A;  1NR9 A;  1SV6 A;  3HU3 A;  1QCN A;  3LZK A;  3FPU A;  1I7O A;  1HYO A;  5FTM A;  3ZJU A;  5GLF A;  1R7R A;  5D6X A;  5CD1 A;  2GFA A;  5D2H A;  4PFZ A;  2QQR A;  5D2G A;  3QDF A;  2YUJ A;  5EQJ B;  1I9G A;  5EPP A;  2QQS A;  3HU2 A;  5C18 A;  3QC8 A;  2B25 A;  4KOD A;  1QQJ A;  1WLF A;  4AQ7 A;  2Q18 X;  1CZ4 A;  2Q1D X;  2EB4 A;  3V77 A;  3S52 A;  2WQT A;  2PWY A;  1QCS A;  1CR5 A;  4RV0 A;  3CF2 A;  1QCO A;  4DBF A;  5CCB A;  4CQN A;  2Q1C X;  4KO8 A;  4ARI A;  5D6Y A;  5D2F A;  3ZGZ A;  4ARC A;  4QKU A;  2GF7 A;  4AS1 A;  4UC4 A;  1ZC1 A;  5FTK A;  3QQ8 A;  3QQ7 A;  3LHD A;  1E32 A;  1S3S A;  3ZJV A;  2KY9 A;  3LGA A;  2DFU A;  1QDN A;  5FTN A;  5D2K A;  3QWZ A;  3MB5 A;  3HU1 A;  1NKQ A;  2HZY A;  5FTJ A;  1GTT A;  4KLN A;  2XDP A;  2MM0 A;  1O54 A;  5DYG A;  1CZ5 A;  5D2J A;  2MM2 A;  4DBH A;  1SAW A;  3ZJT A;  1WZO A;  3RR6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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