2Q2GA

Crystal structure of dimerization domain of hsp40 from cryptosporidium parvum, cgd2_1800
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
176
structure length
176
Chain Sequence
RSHEVPLLVTLEELYLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIKEAL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Chaperone
molecule keywords Heat shock 40 kDa protein, putative (fragment)
publication title Crystal structure of dimerization domain of HSP40 from Cryptosporidium parvum, cgd2_1800.
rcsb
source organism Cryptosporidium parvum iowa ii
total genus 38
structure length 176
sequence length 176
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-05-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01556 DnaJ_C DnaJ C terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.260.20 Mainly Beta Sandwich HSP40/DNAj peptide-binding domain Urease metallochaperone UreE, N-terminal domain 2q2gA02
2.60.260.20 Mainly Beta Sandwich HSP40/DNAj peptide-binding domain Urease metallochaperone UreE, N-terminal domain 2q2gA01
1NLTA 1GMWD 3LA0A 3LZ8A 3I38A 2QLDA 2B26A 3NXZA 3TJAA 1GMUA 2Q2GA 3AGZA 1XAOA 4L3KA 3AGYA 1EB0A 1GMWA 3TJ8A 1EARA 4J80A 3AGXA 3NY0A 1GMVA 1C3GA 3TJ9A 3L9ZA
chains in the Genus database with same CATH superfamily
1NLTA 1GMWD 3LA0A 3LZ8A 3AKOB 2ODXA 3C6EC 3I38A 2QLDA 2B26A 3NXZA 2JRRA 1GMUA 3TJAA 2Q2GA 3AGZA 1XAOA 3C5XC 4L3KA 3AGYA 1EB0A 1GMWA 2JVMA 1EARA 4J80A 3TJ8A 3AGXA 3NY0A 1GMVA 1C3GA 3TJ9A 2JZ8A 3L9ZA
chains in the Genus database with same CATH topology
1NLTA 1GMWD 3LA0A 3LZ8A 3I38A 2QLDA 2B26A 3NXZA 3TJAA 1GMUA 2Q2GA 3AGZA 1XAOA 4L3KA 3AGYA 1EB0A 1GMWA 3TJ8A 1EARA 4J80A 3AGXA 3NY0A 1GMVA 1C3GA 3TJ9A 3L9ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NLT A;  1GMW D;  3LA0 A;  3LZ8 A;  3I38 A;  2QLD A;  2B26 A;  3NXZ A;  3TJA A;  1GMU A;  2Q2G A;  3AGZ A;  1XAO A;  4L3K A;  3AGY A;  1EB0 A;  1GMW A;  3TJ8 A;  1EAR A;  4J80 A;  3AGX A;  3NY0 A;  1GMV A;  1C3G A;  3TJ9 A;  3L9Z A; 
#chains in the Genus database with same CATH topology
 1NLT A;  1GMW D;  3LA0 A;  3LZ8 A;  3AKO B;  2ODX A;  3C6E C;  3I38 A;  2QLD A;  2B26 A;  3NXZ A;  2JRR A;  1GMU A;  3TJA A;  2Q2G A;  3AGZ A;  1XAO A;  3C5X C;  4L3K A;  3AGY A;  1EB0 A;  1GMW A;  2JVM A;  1EAR A;  4J80 A;  3TJ8 A;  3AGX A;  3NY0 A;  1GMV A;  1C3G A;  3TJ9 A;  2JZ8 A;  3L9Z A; 
#chains in the Genus database with same CATH homology
 1NLT A;  1GMW D;  3LA0 A;  3LZ8 A;  3I38 A;  2QLD A;  2B26 A;  3NXZ A;  3TJA A;  1GMU A;  2Q2G A;  3AGZ A;  1XAO A;  4L3K A;  3AGY A;  1EB0 A;  1GMW A;  3TJ8 A;  1EAR A;  4J80 A;  3AGX A;  3NY0 A;  1GMV A;  1C3G A;  3TJ9 A;  3L9Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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