2Q2KA

Structure of nucleic-acid binding protein
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
45
structure length
45
Chain Sequence
KETKHLLKIKKEDYPQIFDFLENVPRGTKTAHIREALRRYIEEIG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein/dna
molecule keywords DNA (5'-D(*AP*GP*TP*AP*TP*AP*(5IU)P*AP*CP*(5IU)P*AP*GP*TP*AP
publication title Segrosome structure revealed by a complex of ParR with centromere DNA.
pubmed doi rcsb
source organism Staphylococcus aureus
total genus 8
structure length 45
sequence length 45
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-05-28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1220.90 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant Arc Repressor Mutant 2q2kA00
2Q2KA
chains in the Genus database with same CATH superfamily
2WVCA 2BNWA 3UPFA 3FMTA 2CA9A 3NAIA 4LRVA 1MYLA 3BSNA 1Q5VA 2BSQE 1U9PA 3VW4A 2BJ1A 2WK4A 3NNEA 1B01A 2BA3A 4LQ3A 4NRTA 1MNTA 1PARA 4NRUA 1BDTA 1NLAA 4O4RA 2WVEA 2HZAA 2CAXA 3H5XA 1MYKA 2BJ9A 3H87C 2RBFA 2UUWA 4AAIA 2CAJA 4LQ9A 3LJPA 4MJWA 1SH3A 2KOEA 2CADA 2A2BA 2CKWA 2WVFA 2Q2KA 2WVBA 2K5JA 2GPEA 2H3AA 3FT7A 3SFGA 2WVDA 1OHNA 1ARQA 3UQSA 3GXQA 2JXHA 2KKEA 1EA4A 2H1OE 1ARRA 2AY0A 1OG7A 2CPGA 4FXEA 1B28A 2B43A 1IRQA 3IR7A 3VEBA 3UR0A 3QIDA 1SH0A 3OD2A 3SFUA 3QOQA 1BDVA 2AN7A 1QTGA 2K6LA 3NO7A 1P94A 4QPXA 2K1OA 1BAZA 3BSOA 1X93A 2ADLA 2HZVA 3G5OA 1Q16A 4HV0A 4ME7E 2JBVA 2BJ8A 1SH2A 2K29A 2K9IA 3H5YA 2JXIA 2KELA 2UUTA 2JXGA 3NAHA 3LGHA 2BJ7A 4D8JA 2BJ3A 1SIWA 3VEAA 2BNZA
chains in the Genus database with same CATH topology
4AAIA 2KKEA 4QPXA 3BSOA 4LQ9A 3UPFA 1OG7A 3LJPA 3NAIA 2ADLA 4MJWA 1SH3A 4LRVA 3G5OA 3BSNA 1Q16A 2JBVA 2KOEA 1SH2A 2A2BA 2B43A 2CKWA 3H5YA 2Q2KA 3IR7A 2WK4A 3NNEA 2UUTA 4LQ3A 3UR0A 3QIDA 4NRTA 1SH0A 3NAHA 4NRUA 3SFUA 4O4RA 2H3AA 2AN7A 3SFGA 1SIWA 3H5XA 1OHNA 3UQSA 3NO7A 2UUWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Q2K A; 
#chains in the Genus database with same CATH topology
 2WVC A;  2BNW A;  3UPF A;  3FMT A;  2CA9 A;  3NAI A;  4LRV A;  1MYL A;  3BSN A;  1Q5V A;  2BSQ E;  1U9P A;  3VW4 A;  2BJ1 A;  2WK4 A;  3NNE A;  1B01 A;  2BA3 A;  4LQ3 A;  4NRT A;  1MNT A;  1PAR A;  4NRU A;  1BDT A;  1NLA A;  4O4R A;  2WVE A;  2HZA A;  2CAX A;  3H5X A;  1MYK A;  2BJ9 A;  3H87 C;  2RBF A;  2UUW A;  4AAI A;  2CAJ A;  4LQ9 A;  3LJP A;  4MJW A;  1SH3 A;  2KOE A;  2CAD A;  2A2B A;  2CKW A;  2WVF A;  2Q2K A;  2WVB A;  2K5J A;  2GPE A;  2H3A A;  3FT7 A;  3SFG A;  2WVD A;  1OHN A;  1ARQ A;  3UQS A;  3GXQ A;  2JXH A;  2KKE A;  1EA4 A;  2H1O E;  1ARR A;  2AY0 A;  1OG7 A;  2CPG A;  4FXE A;  1B28 A;  2B43 A;  1IRQ A;  3IR7 A;  3VEB A;  3UR0 A;  3QID A;  1SH0 A;  3OD2 A;  3SFU A;  3QOQ A;  1BDV A;  2AN7 A;  1QTG A;  2K6L A;  3NO7 A;  1P94 A;  4QPX A;  2K1O A;  1BAZ A;  3BSO A;  1X93 A;  2ADL A;  2HZV A;  3G5O A;  1Q16 A;  4HV0 A;  4ME7 E;  2JBV A;  2BJ8 A;  1SH2 A;  2K29 A;  2K9I A;  3H5Y A;  2JXI A;  2KEL A;  2UUT A;  2JXG A;  3NAH A;  3LGH A;  2BJ7 A;  4D8J A;  2BJ3 A;  1SIW A;  3VEA A;  2BNZ A; 
#chains in the Genus database with same CATH homology
 4AAI A;  2KKE A;  4QPX A;  3BSO A;  4LQ9 A;  3UPF A;  1OG7 A;  3LJP A;  3NAI A;  2ADL A;  4MJW A;  1SH3 A;  4LRV A;  3G5O A;  3BSN A;  1Q16 A;  2JBV A;  2KOE A;  1SH2 A;  2A2B A;  2B43 A;  2CKW A;  3H5Y A;  2Q2K A;  3IR7 A;  2WK4 A;  3NNE A;  2UUT A;  4LQ3 A;  3UR0 A;  3QID A;  4NRT A;  1SH0 A;  3NAH A;  4NRU A;  3SFU A;  4O4R A;  2H3A A;  2AN7 A;  3SFG A;  1SIW A;  3H5X A;  1OHN A;  3UQS A;  3NO7 A;  2UUW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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