2Q4CA

Ensemble refinement of the protein crystal structure of annexin from arabidopsis thaliana gene at1g35720
Total Genus 103
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
103
sequence length
317
structure length
312
Chain Sequence
SATLKVSDSVPAPSDDAEQLRTAFEEDLIISILAHRSAEQRKVIRQAYHETYGEDLLKTLDKELSNDFERAILLWTLEPGERDALLANEATKRWTSSNQVLMEVACTRTSTQLLHARQAYHARYKKSLEEDVAHHTTGDFRKLLVSLVTSYRYEGDEVNMTLAKQEAKLVHEKIKDKHYNDEDVIRILSTRSKAQINATFNRYQDDHGEEILKSLEEGDDDDKFLALLRSTIQCLTRPELYFVDVLRSAINKTGTDEGALTRIVTTRAEIDLKVIGEEYQRRNSIPLEKAITKDTRGDYEKMLVALLGEDDA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Metal binding protein
molecule keywords Annexin D1
publication title Ensemble refinement of protein crystal structures: validation and application.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 103
structure length 312
sequence length 317
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-05-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00191 Annexin Annexin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 2q4cA04
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 2q4cA02
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 2q4cA03
1.10.220.10 Mainly Alpha Orthogonal Bundle Annexin V; domain 1 Annexin 2q4cA01
1BC1A 2IICA 1AVHA 1HAKA 1HM6A 4EVFA 2HYVA 1AVCA 1A8BA 2II2A 1G5NA 1BCWA 1HVEA 1N00A 2H0MA 1XJLA 2XO2A 1N44A 2ZHIA 3BRXA 4X9PA 1BC0A 2ZOCA 1YIIA 1W7BA 1ALAA 1ANXA 1AEIA 1HVGA 1N42A 1YCNA 1DK5A 1I4AA 1BO9A 1HVFA 1W45A 1YJ0A 2H0LA 1AVRA 1HVDA 2HYUA 4EVHA 1ANWA 2ZHJA 1N41A 1ANNA 2Q4CA 1AOWA 1A8AA 2IE6A 2HYWA 4HREA 1SAVA 2IE7A 1W3WA 4MDUA 1DM5A 1MCXA 1BC3A 1M9IA 2H0KA 4MDVA 1BCYA 2RANA 2XO3A 1AIIA 1AXNA 1BCZA
chains in the Genus database with same CATH superfamily
2IICA 1HAKA 4EVFA 1AVCA 2II2A 2ZHIA 1HVEA 2XO2A 1XJLA 4X9PA 3SWVA 1YIIA 2OY9A 1AEIA 1HVGA 2R09A 1DK5A 4JWLA 1YGMA 1Q8DA 1YJ0A 2HYUA 3ABOA 1AVRA 4JK1X 1QC7A 2ZHJA 4KMUX 1ANNA 2HYWA 4HREA 2IE7A 1C1KA 2H0KA 4C7PA 4A4PA 1BCYA 2XO3A 1AIIA 4L5MA 1S9DE 1LKVX 1BCWA 1N00A 2H0MA 1W7BA 1ANXA 1R8QE 3USYA 3L8NA 1HVDA 1R4AE 3HJLA 2Q4CA 4OIYA 4Z21A 1MCXA 1M9IA 3SOHB 4MDVA 1UPTB 3TW5A 4JXHA 1AXNA 4KN4X 1BCZA 1BC1A 1PBVA 2HYVA 1G5NA 3AO0A 4FHRB 4D7RA 1XT0B 1BC0A 2ZOCA 3ABQA 1BC9A 3ANYA 4JMOA 1N42A 1YCNA 1I4AA 1BO9A 1HVFA 1W45A 1R8SE 3AJCA 1N41A 1A8AA 2IE6A 4C0AA 1SAVA 4Q2SA 2RANA 3LTLA 4D7QA 1AVHA 1HM6A 2K6XA 2R0DA 1A8BA 3BRXA 2QEZA 1N44A 3USWA 1ALAA 3ABRA 4KN7X 2H0LA 1XSZA 2VXGA 4EVHA 1ANWA 1R8ME 4JMIA 1AOWA 1W3WA 1KU1A 1RE0B 1DM5A 4MDUA 1BC3A 3ABSA 2HSNA 4FQ0C
chains in the Genus database with same CATH topology
1BC1A 2IICA 1AVHA 1HAKA 1HM6A 4EVFA 2HYVA 1AVCA 1A8BA 2II2A 1G5NA 1BCWA 1HVEA 1N00A 2H0MA 1XJLA 2XO2A 1N44A 2ZHIA 3BRXA 4X9PA 1BC0A 2ZOCA 1YIIA 1W7BA 1ALAA 1ANXA 1AEIA 1HVGA 1N42A 1YCNA 1DK5A 1I4AA 1BO9A 1HVFA 1W45A 1YJ0A 2H0LA 1AVRA 1HVDA 2HYUA 4EVHA 1ANWA 2ZHJA 1N41A 1ANNA 2Q4CA 1AOWA 1A8AA 2IE6A 2HYWA 4HREA 1SAVA 2IE7A 1W3WA 4MDUA 1DM5A 1MCXA 1BC3A 1M9IA 2H0KA 4MDVA 1BCYA 2RANA 2XO3A 1AIIA 1AXNA 1BCZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BC1 A;  2IIC A;  1AVH A;  1HAK A;  1HM6 A;  4EVF A;  2HYV A;  1AVC A;  1A8B A;  2II2 A;  1G5N A;  1BCW A;  1HVE A;  1N00 A;  2H0M A;  1XJL A;  2XO2 A;  1N44 A;  2ZHI A;  3BRX A;  4X9P A;  1BC0 A;  2ZOC A;  1YII A;  1W7B A;  1ALA A;  1ANX A;  1AEI A;  1HVG A;  1N42 A;  1YCN A;  1DK5 A;  1I4A A;  1BO9 A;  1HVF A;  1W45 A;  1YJ0 A;  2H0L A;  1AVR A;  1HVD A;  2HYU A;  4EVH A;  1ANW A;  2ZHJ A;  1N41 A;  1ANN A;  2Q4C A;  1AOW A;  1A8A A;  2IE6 A;  2HYW A;  4HRE A;  1SAV A;  2IE7 A;  1W3W A;  4MDU A;  1DM5 A;  1MCX A;  1BC3 A;  1M9I A;  2H0K A;  4MDV A;  1BCY A;  2RAN A;  2XO3 A;  1AII A;  1AXN A;  1BCZ A; 
#chains in the Genus database with same CATH topology
 2IIC A;  1HAK A;  4EVF A;  1AVC A;  2II2 A;  2ZHI A;  1HVE A;  2XO2 A;  1XJL A;  4X9P A;  3SWV A;  1YII A;  2OY9 A;  1AEI A;  1HVG A;  2R09 A;  1DK5 A;  4JWL A;  1YGM A;  1Q8D A;  1YJ0 A;  2HYU A;  3ABO A;  1AVR A;  4JK1 X;  1QC7 A;  2ZHJ A;  4KMU X;  1ANN A;  2HYW A;  4HRE A;  2IE7 A;  1C1K A;  2H0K A;  4C7P A;  4A4P A;  1BCY A;  2XO3 A;  1AII A;  4L5M A;  1S9D E;  1LKV X;  1BCW A;  1N00 A;  2H0M A;  1W7B A;  1ANX A;  1R8Q E;  3USY A;  3L8N A;  1HVD A;  1R4A E;  3HJL A;  2Q4C A;  4OIY A;  4Z21 A;  1MCX A;  1M9I A;  3SOH B;  4MDV A;  1UPT B;  3TW5 A;  4JXH A;  1AXN A;  4KN4 X;  1BCZ A;  1BC1 A;  1PBV A;  2HYV A;  1G5N A;  3AO0 A;  4FHR B;  4D7R A;  1XT0 B;  1BC0 A;  2ZOC A;  3ABQ A;  1BC9 A;  3ANY A;  4JMO A;  1N42 A;  1YCN A;  1I4A A;  1BO9 A;  1HVF A;  1W45 A;  1R8S E;  3AJC A;  1N41 A;  1A8A A;  2IE6 A;  4C0A A;  1SAV A;  4Q2S A;  2RAN A;  3LTL A;  4D7Q A;  1AVH A;  1HM6 A;  2K6X A;  2R0D A;  1A8B A;  3BRX A;  2QEZ A;  1N44 A;  3USW A;  1ALA A;  3ABR A;  4KN7 X;  2H0L A;  1XSZ A;  2VXG A;  4EVH A;  1ANW A;  1R8M E;  4JMI A;  1AOW A;  1W3W A;  1KU1 A;  1RE0 B;  1DM5 A;  4MDU A;  1BC3 A;  3ABS A;  2HSN A;  4FQ0 C; 
#chains in the Genus database with same CATH homology
 1BC1 A;  2IIC A;  1AVH A;  1HAK A;  1HM6 A;  4EVF A;  2HYV A;  1AVC A;  1A8B A;  2II2 A;  1G5N A;  1BCW A;  1HVE A;  1N00 A;  2H0M A;  1XJL A;  2XO2 A;  1N44 A;  2ZHI A;  3BRX A;  4X9P A;  1BC0 A;  2ZOC A;  1YII A;  1W7B A;  1ALA A;  1ANX A;  1AEI A;  1HVG A;  1N42 A;  1YCN A;  1DK5 A;  1I4A A;  1BO9 A;  1HVF A;  1W45 A;  1YJ0 A;  2H0L A;  1AVR A;  1HVD A;  2HYU A;  4EVH A;  1ANW A;  2ZHJ A;  1N41 A;  1ANN A;  2Q4C A;  1AOW A;  1A8A A;  2IE6 A;  2HYW A;  4HRE A;  1SAV A;  2IE7 A;  1W3W A;  4MDU A;  1DM5 A;  1MCX A;  1BC3 A;  1M9I A;  2H0K A;  4MDV A;  1BCY A;  2RAN A;  2XO3 A;  1AII A;  1AXN A;  1BCZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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