2Q82A

Crystal structure of core protein p7 from pseudomonas phage phi12. northeast structural genomics target oc1
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
116
structure length
114
Chain Sequence
ELQNRLAQYETSLMVMSHNGDVPVITGFNVMRVTTMLDALKVPAVAVLGDDAQDLAYVFGARPLAVGVNIIRVVDVPGQQPSALVDAELGALHEVSMVRVLNDIADEQLVKANM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Core protein P7
publication title Structure and dynamics of the P7 protein from the bacteriophage phi 12.
pubmed doi rcsb
source organism Pseudomonas phage phi12
total genus 30
structure length 114
sequence length 116
ec nomenclature
pdb deposition date 2007-06-08
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.250.20 Alpha Beta 3-Layer(aba) Sandwich Oxidized Rhodanese; domain 1 Oxidized Rhodanese; domain 1 2q82A00
2Q82A
chains in the Genus database with same CATH superfamily
1YMLA 3I2VA 5HBPA 3ICSA 3TP9A 2EG4B 1YT8A 1YM9A 1OKGA 3P3AA 3NHVA 1E0CA 3ICRA 3FNJA 1BOHA 2JTQA 1H4MX 2DCQA 1CWTA 5HBQA 2FSXA 4WH9A 2WLXA 1GMXA 3GK5A 1WHBA 1VEEA 3FOJA 5HBOA 2HHGA 3IPOA 5LAMA 3R2UA 3TG1B 2KL3A 1RHSA 1ORBA 2ORAA 1C25A 3AAYA 3IPPA 2VSWA 1YS0A 1UARA 1YMKA 3F4AA 3MZZA 1WV9A 5LAOA 2MRMA 4WH7A 2EG3A 2IFDA 1QXNA 1CWRA 1HZMA 3D1PA 2JTRA 1QB0A 2UZQA 5HPAA 2JTSA 3HIXA 1YMDA 5HBLA 2MOLA 3IWHA 2K0ZA 3AAXA 3HWIA 3UTNX 3ICTA 3OP3A 4F67A 3NT6A 2OUCA 3G5JA 1CWSA 2MOIA 2A2KA 3O3WA 3ILMA 2IFVA 1H4KX 2Q82A 1T3KA 2GWFA 1TQ1A 3K9RA 3NTDA 2J6PA 3FS5A 3I3UA 1RHDA 3HZUA 1GN0A 3TG3A 3OLHA 2WLRA 4OCGA 3FLHA 3NTAA 1BOIA 1URHA 1DP2A 4JGTA 2EG4A
chains in the Genus database with same CATH topology
2Q82A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Q82 A; 
#chains in the Genus database with same CATH topology
 1YML A;  3I2V A;  5HBP A;  3ICS A;  3TP9 A;  2EG4 B;  1YT8 A;  1YM9 A;  1OKG A;  3P3A A;  3NHV A;  1E0C A;  3ICR A;  3FNJ A;  1BOH A;  2JTQ A;  1H4M X;  2DCQ A;  1CWT A;  5HBQ A;  2FSX A;  4WH9 A;  2WLX A;  1GMX A;  3GK5 A;  1WHB A;  1VEE A;  3FOJ A;  5HBO A;  2HHG A;  3IPO A;  5LAM A;  3R2U A;  3TG1 B;  2KL3 A;  1RHS A;  1ORB A;  2ORA A;  1C25 A;  3AAY A;  3IPP A;  2VSW A;  1YS0 A;  1UAR A;  1YMK A;  3F4A A;  3MZZ A;  1WV9 A;  5LAO A;  2MRM A;  4WH7 A;  2EG3 A;  2IFD A;  1QXN A;  1CWR A;  1HZM A;  3D1P A;  2JTR A;  1QB0 A;  2UZQ A;  5HPA A;  2JTS A;  3HIX A;  1YMD A;  5HBL A;  2MOL A;  3IWH A;  2K0Z A;  3AAX A;  3HWI A;  3UTN X;  3ICT A;  3OP3 A;  4F67 A;  3NT6 A;  2OUC A;  3G5J A;  1CWS A;  2MOI A;  2A2K A;  3O3W A;  3ILM A;  2IFV A;  1H4K X;  2Q82 A;  1T3K A;  2GWF A;  1TQ1 A;  3K9R A;  3NTD A;  2J6P A;  3FS5 A;  3I3U A;  1RHD A;  3HZU A;  1GN0 A;  3TG3 A;  3OLH A;  2WLR A;  4OCG A;  3FLH A;  3NTA A;  1BOI A;  1URH A;  1DP2 A;  4JGT A;  2EG4 A; 
#chains in the Genus database with same CATH homology
 2Q82 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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