2Q8AA

Structure of the malaria antigen ama1 in complex with a growth-inhibitory antibody
Total Genus 97
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
97
sequence length
332
structure length
316
Chain Sequence
GNPWTEYMAKYDIEEVHGSGIRVDLGEDAEVAGTQYRLPSGKCPVFGKGIIIENSNTTFLTPVATGNQYLKDGGFAFPPTEPLMSPMTLDEMRHFYKDNKYVKNLDELTLCSRHAGNMIPDNDKNSNYKYPAVYDDKDKKCHILYIAAQENNGPRYCNKDESKRNSMFCFRPAKDISFQNYTYLSKNVVDNWEKVCPRKNLQNAKFGLWVDGNCEDIPHVNEFPAIDLFECNKLVFELSASDQPEQHLTDYEKIKEGFKNKNASMIKYKSHGKGYNWGNYNTETQKCEIFNVKPTCLINNSSYIATTALSHPIEVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords Apical membrane antigen 1
publication title Structure of the malaria antigen AMA1 in complex with a growth-inhibitory antibody.
pubmed doi rcsb
source organism Plasmodium falciparum
total genus 97
structure length 316
sequence length 332
ec nomenclature
pdb deposition date 2007-06-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 2q8aA01
2QJ2A 3SRJA 1GP9A 5CT3A 2Z8VA 1GMOA 2Q8BA 1I8NA 3HMSA 2Q8AA 1BHTA 4R1AA 2Z8WA 1W8KA 2YILA 4R19A 4UAOA 5COEA 5CS1A 5CS3A 4R1CA 5I25A 2Y8RA 1HKYA 4UV6A 4IUAA 3ZLEA 2LL3A 5CS9A 1Z40A 3HMTA 3SRIA 2YIPA 4A5TS 2X2ZA 2HGFA 4Z0DA 2QJ4A 5EODA 2J8JA 1YXEA 2YIOA 1NK1A 4Z09A 3ZWZA 5CS5A 3SP8A 5CT2A 2J8LA 5EOKA 4APLA 4Z0FA 4Z0EA 3HN4A 4DURA 2LL4M 3MKPA 5CT1A 2F83A 1GMNA 4APMA 1W81A 5CSQA 2K13X 3HMRA 4R1BA 5CP9A
chains in the Genus database with same CATH superfamily
2QJ2A 3SRJA 1GP9A 5CT3A 2Z8VA 1GMOA 2Q8BA 1I8NA 3HMSA 2Q8AA 1BHTA 4R1AA 2Z8WA 1W8KA 2YILA 4R19A 4UAOA 5COEA 5CS1A 5CS3A 4R1CA 5I25A 2Y8RA 1HKYA 4UV6A 4IUAA 3ZLEA 2LL3A 5CS9A 1Z40A 3HMTA 3SRIA 2YIPA 4A5TS 2X2ZA 2HGFA 4YIZA 2QJ4A 4Z0DA 2J8JA 1YXEA 2YIOA 1NK1A 4Z09A 5EODA 3ZWZA 5CS5A 3SP8A 5CT2A 2J8LA 5EOKA 4APLA 4Z0FA 4YIVA 4Z0EA 3HN4A 2KL5A 4DURA 2LL4M 3MKPA 5CT1A 2F83A 1GMNA 4APMA 1W81A 5CSQA 2K13X 3HMRA 4R1BA 5CP9A
chains in the Genus database with same CATH topology
2QJ2A 3SRJA 1GP9A 5CT3A 2Z8VA 1GMOA 2Q8BA 1I8NA 3HMSA 2Q8AA 1BHTA 4R1AA 2Z8WA 1W8KA 2YILA 4R19A 4UAOA 5COEA 5CS1A 5CS3A 4R1CA 5I25A 2Y8RA 1HKYA 4UV6A 4IUAA 3ZLEA 2LL3A 5CS9A 1Z40A 3HMTA 3SRIA 2YIPA 4A5TS 2X2ZA 2HGFA 4YIZA 2QJ4A 4Z0DA 2J8JA 1YXEA 2YIOA 1NK1A 4Z09A 5EODA 3ZWZA 5CS5A 3SP8A 5CT2A 2J8LA 5EOKA 4APLA 4Z0FA 4YIVA 4Z0EA 3HN4A 2KL5A 4DURA 2LL4M 3MKPA 5CT1A 2F83A 1GMNA 4APMA 1W81A 5CSQA 2K13X 3HMRA 4R1BA 5CP9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QJ2 A;  3SRJ A;  1GP9 A;  5CT3 A;  2Z8V A;  1GMO A;  2Q8B A;  1I8N A;  3HMS A;  2Q8A A;  1BHT A;  4R1A A;  2Z8W A;  1W8K A;  2YIL A;  4R19 A;  4UAO A;  5COE A;  5CS1 A;  5CS3 A;  4R1C A;  5I25 A;  2Y8R A;  1HKY A;  4UV6 A;  4IUA A;  3ZLE A;  2LL3 A;  5CS9 A;  1Z40 A;  3HMT A;  3SRI A;  2YIP A;  4A5T S;  2X2Z A;  2HGF A;  4Z0D A;  2QJ4 A;  5EOD A;  2J8J A;  1YXE A;  2YIO A;  1NK1 A;  4Z09 A;  3ZWZ A;  5CS5 A;  3SP8 A;  5CT2 A;  2J8L A;  5EOK A;  4APL A;  4Z0F A;  4Z0E A;  3HN4 A;  4DUR A;  2LL4 M;  3MKP A;  5CT1 A;  2F83 A;  1GMN A;  4APM A;  1W81 A;  5CSQ A;  2K13 X;  3HMR A;  4R1B A;  5CP9 A; 
#chains in the Genus database with same CATH topology
 2QJ2 A;  3SRJ A;  1GP9 A;  5CT3 A;  2Z8V A;  1GMO A;  2Q8B A;  1I8N A;  3HMS A;  2Q8A A;  1BHT A;  4R1A A;  2Z8W A;  1W8K A;  2YIL A;  4R19 A;  4UAO A;  5COE A;  5CS1 A;  5CS3 A;  4R1C A;  5I25 A;  2Y8R A;  1HKY A;  4UV6 A;  4IUA A;  3ZLE A;  2LL3 A;  5CS9 A;  1Z40 A;  3HMT A;  3SRI A;  2YIP A;  4A5T S;  2X2Z A;  2HGF A;  4YIZ A;  2QJ4 A;  4Z0D A;  2J8J A;  1YXE A;  2YIO A;  1NK1 A;  4Z09 A;  5EOD A;  3ZWZ A;  5CS5 A;  3SP8 A;  5CT2 A;  2J8L A;  5EOK A;  4APL A;  4Z0F A;  4YIV A;  4Z0E A;  3HN4 A;  2KL5 A;  4DUR A;  2LL4 M;  3MKP A;  5CT1 A;  2F83 A;  1GMN A;  4APM A;  1W81 A;  5CSQ A;  2K13 X;  3HMR A;  4R1B A;  5CP9 A; 
#chains in the Genus database with same CATH homology
 2QJ2 A;  3SRJ A;  1GP9 A;  5CT3 A;  2Z8V A;  1GMO A;  2Q8B A;  1I8N A;  3HMS A;  2Q8A A;  1BHT A;  4R1A A;  2Z8W A;  1W8K A;  2YIL A;  4R19 A;  4UAO A;  5COE A;  5CS1 A;  5CS3 A;  4R1C A;  5I25 A;  2Y8R A;  1HKY A;  4UV6 A;  4IUA A;  3ZLE A;  2LL3 A;  5CS9 A;  1Z40 A;  3HMT A;  3SRI A;  2YIP A;  4A5T S;  2X2Z A;  2HGF A;  4YIZ A;  2QJ4 A;  4Z0D A;  2J8J A;  1YXE A;  2YIO A;  1NK1 A;  4Z09 A;  5EOD A;  3ZWZ A;  5CS5 A;  3SP8 A;  5CT2 A;  2J8L A;  5EOK A;  4APL A;  4Z0F A;  4YIV A;  4Z0E A;  3HN4 A;  2KL5 A;  4DUR A;  2LL4 M;  3MKP A;  5CT1 A;  2F83 A;  1GMN A;  4APM A;  1W81 A;  5CSQ A;  2K13 X;  3HMR A;  4R1B A;  5CP9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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