2Q8BA

Structure of the malaria antigen ama1 in complex with a growth-inhibitory antibody
Total Genus 84
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
334
structure length
292
Chain Sequence
YMGNPWTEYMAKYDIEEVHGSGIRVDLGEDAEVAGTQYRLPSGKCPVFGKGIIIENSNTTFLTPVATGNQYLKDGGFAFPPTEPLMSPMTLDEMRHFYKDNKYVKNLDELTLCSRHAGNMIPDNDKNSNYKYPAVYDDKDKKCHILYIAAQENNGPRYCMFCFRPAKDISFQNYTYLSKNVVDNWEKVCPRKNLQNAKFGLWVDGNCEDIPHVNEFPAIDLFECNKLVFELSASDQPKQYEDRYKSHGKGYNWGNYNTETQKCEIFNVKPTCLINNSSYIATTALSHPIEVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords Apical membrane antigen 1
publication title Structure of the Malaria Antigen AMA1 in Complex with a Growth-Inhibitory Antibody
pubmed doi rcsb
source organism Plasmodium falciparum
total genus 84
structure length 292
sequence length 334
ec nomenclature
pdb deposition date 2007-06-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 2q8bA01
2YIPA 3SRIA 5CT1A 3ZWZA 2K13X 1NK1A 4Z0DA 1YXEA 2Q8AA 1BHTA 2X2ZA 3ZLEA 5EODA 5CT3A 2LL4M 4DURA 2HGFA 3SRJA 2F83A 5CS5A 4R19A 2YIOA 2LL3A 4UV6A 5CT2A 2Y8RA 3HMTA 4R1AA 5COEA 3HMRA 5CS1A 2Q8BA 4R1BA 4A5TS 4IUAA 4APLA 2J8LA 1GMOA 1GMNA 3HN4A 4Z09A 5EOKA 5CP9A 5CSQA 1W81A 5CS3A 1W8KA 3SP8A 2J8JA 4APMA 2Z8WA 5I25A 4Z0FA 1I8NA 2QJ2A 2QJ4A 1GP9A 4Z0EA 3HMSA 3MKPA 5CS9A 4UAOA 2Z8VA 4R1CA 1HKYA 1Z40A 2YILA
chains in the Genus database with same CATH superfamily
2YIPA 3SRIA 5CT1A 3ZWZA 2K13X 1NK1A 4Z0DA 1YXEA 2KL5A 2Q8AA 1BHTA 2X2ZA 3ZLEA 5EODA 5CT3A 2LL4M 4DURA 2HGFA 3SRJA 2F83A 5CS5A 4R19A 2YIOA 2LL3A 4UV6A 5CT2A 2Y8RA 3HMTA 4R1AA 4YIZA 5COEA 3HMRA 5CS1A 2Q8BA 4R1BA 4A5TS 4IUAA 4APLA 2J8LA 1GMOA 1GMNA 3HN4A 4Z09A 4YIVA 5EOKA 5CP9A 5CSQA 1W81A 5CS3A 1W8KA 3SP8A 2J8JA 4APMA 2Z8WA 5I25A 4Z0FA 1I8NA 2QJ2A 2QJ4A 1GP9A 4Z0EA 3HMSA 3MKPA 5CS9A 4UAOA 2Z8VA 4R1CA 1HKYA 1Z40A 2YILA
chains in the Genus database with same CATH topology
2YIPA 3SRIA 5CT1A 3ZWZA 2K13X 1NK1A 4Z0DA 1YXEA 2KL5A 2Q8AA 1BHTA 2X2ZA 3ZLEA 5EODA 5CT3A 2LL4M 4DURA 2HGFA 3SRJA 2F83A 5CS5A 4R19A 2YIOA 2LL3A 4UV6A 5CT2A 2Y8RA 3HMTA 4R1AA 4YIZA 5COEA 3HMRA 5CS1A 2Q8BA 4R1BA 4A5TS 4IUAA 4APLA 2J8LA 1GMOA 1GMNA 3HN4A 4Z09A 4YIVA 5EOKA 5CP9A 5CSQA 1W81A 5CS3A 1W8KA 3SP8A 2J8JA 4APMA 2Z8WA 5I25A 4Z0FA 1I8NA 2QJ2A 2QJ4A 1GP9A 4Z0EA 3HMSA 3MKPA 5CS9A 4UAOA 2Z8VA 4R1CA 1HKYA 1Z40A 2YILA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YIP A;  3SRI A;  5CT1 A;  3ZWZ A;  2K13 X;  1NK1 A;  4Z0D A;  1YXE A;  2Q8A A;  1BHT A;  2X2Z A;  3ZLE A;  5EOD A;  5CT3 A;  2LL4 M;  4DUR A;  2HGF A;  3SRJ A;  2F83 A;  5CS5 A;  4R19 A;  2YIO A;  2LL3 A;  4UV6 A;  5CT2 A;  2Y8R A;  3HMT A;  4R1A A;  5COE A;  3HMR A;  5CS1 A;  2Q8B A;  4R1B A;  4A5T S;  4IUA A;  4APL A;  2J8L A;  1GMO A;  1GMN A;  3HN4 A;  4Z09 A;  5EOK A;  5CP9 A;  5CSQ A;  1W81 A;  5CS3 A;  1W8K A;  3SP8 A;  2J8J A;  4APM A;  2Z8W A;  5I25 A;  4Z0F A;  1I8N A;  2QJ2 A;  2QJ4 A;  1GP9 A;  4Z0E A;  3HMS A;  3MKP A;  5CS9 A;  4UAO A;  2Z8V A;  4R1C A;  1HKY A;  1Z40 A;  2YIL A; 
#chains in the Genus database with same CATH topology
 2YIP A;  3SRI A;  5CT1 A;  3ZWZ A;  2K13 X;  1NK1 A;  4Z0D A;  1YXE A;  2KL5 A;  2Q8A A;  1BHT A;  2X2Z A;  3ZLE A;  5EOD A;  5CT3 A;  2LL4 M;  4DUR A;  2HGF A;  3SRJ A;  2F83 A;  5CS5 A;  4R19 A;  2YIO A;  2LL3 A;  4UV6 A;  5CT2 A;  2Y8R A;  3HMT A;  4R1A A;  4YIZ A;  5COE A;  3HMR A;  5CS1 A;  2Q8B A;  4R1B A;  4A5T S;  4IUA A;  4APL A;  2J8L A;  1GMO A;  1GMN A;  3HN4 A;  4Z09 A;  4YIV A;  5EOK A;  5CP9 A;  5CSQ A;  1W81 A;  5CS3 A;  1W8K A;  3SP8 A;  2J8J A;  4APM A;  2Z8W A;  5I25 A;  4Z0F A;  1I8N A;  2QJ2 A;  2QJ4 A;  1GP9 A;  4Z0E A;  3HMS A;  3MKP A;  5CS9 A;  4UAO A;  2Z8V A;  4R1C A;  1HKY A;  1Z40 A;  2YIL A; 
#chains in the Genus database with same CATH homology
 2YIP A;  3SRI A;  5CT1 A;  3ZWZ A;  2K13 X;  1NK1 A;  4Z0D A;  1YXE A;  2KL5 A;  2Q8A A;  1BHT A;  2X2Z A;  3ZLE A;  5EOD A;  5CT3 A;  2LL4 M;  4DUR A;  2HGF A;  3SRJ A;  2F83 A;  5CS5 A;  4R19 A;  2YIO A;  2LL3 A;  4UV6 A;  5CT2 A;  2Y8R A;  3HMT A;  4R1A A;  4YIZ A;  5COE A;  3HMR A;  5CS1 A;  2Q8B A;  4R1B A;  4A5T S;  4IUA A;  4APL A;  2J8L A;  1GMO A;  1GMN A;  3HN4 A;  4Z09 A;  4YIV A;  5EOK A;  5CP9 A;  5CSQ A;  1W81 A;  5CS3 A;  1W8K A;  3SP8 A;  2J8J A;  4APM A;  2Z8W A;  5I25 A;  4Z0F A;  1I8N A;  2QJ2 A;  2QJ4 A;  1GP9 A;  4Z0E A;  3HMS A;  3MKP A;  5CS9 A;  4UAO A;  2Z8V A;  4R1C A;  1HKY A;  1Z40 A;  2YIL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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