2Q9HA

Crystal structure of the c73s mutant of diaminopimelate epimerase
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
274
structure length
274
Chain Sequence
MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHYRIFNADGSEVSQSGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLCGAVSMGNPHCVVQVDDIQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Dynamics of catalysis revealed from the crystal structures of mutants of diaminopimelate epimerase.
pubmed doi rcsb
source organism Haemophilus influenzae
molecule tags Isomerase
molecule keywords Diaminopimelate epimerase
total genus 69
structure length 274
sequence length 274
ec nomenclature ec 5.1.1.7: Diaminopimelate epimerase.
pdb deposition date 2007-06-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01678 DAP_epimerase Diaminopimelate epimerase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 2q9hA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 2q9hA01
1U1VA 1W61A 2GKJA 3G7KA 4K7GB 1TM0A 1U1WA 4DUNA 5IWEA 4J9XA 4JBDA 1SDJA 4IK0A 3EKMA 1GQZA 1QYAA 1U1XA 5H2GA 4J9WA 1YM5A 1W62A 4JD7A 3EJXA 5H2YA 4JUUA 2Q9HA 4IJZA 4K8LA 2PW0A 1U0KA 5HA4A 4LB0A 1XUBA 2OTNA 2AZPA 2H9FA 2Q9JA 1XUAA 5M47A 2GKEA 4Q2HA 4Q60A 4K7XA 4JCIA 1S7JA 1T6KA 3EDNA 2PVZA 3FVEA 1BWZA 1QY9A
chains in the Genus database with same CATH superfamily
1TM0A 1IR6A 4DUNA 2YMAA 4IK0A 2QB8A 4LS9A 3IGHX 3PVHA 4J9WA 4JD7A 4K8LA 1U0KA 2ZXPA 1WPMA 2OTNA 2AZPA 2GKEA 4Q60A 4K7XA 4JCIA 1S7JA 1T6KA 2PVZA 1I74A 2GKJA 3G7KA 2ENXA 1U1WA 4JBDA 3EKMA 4PY9A 2LT2A 3G98A 1YM5A 2ZXRA 2EB0A 2Q9HA 4IJZA 1K20A 2IW4A 2KW7A 2QB7A 2H9FA 1WPPA 4JUUA 1U1VA 1W61A 4K7GB 5IWEA 1SDJA 4GL6A 1QYAA 1U1XA 4OA3A 3PW9A 3EJXA 5H2YA 4LB0A 1XUBA 3WQZA 4Q2HA 3EDNA 3FVEA 3ICJA 1BWZA 1QY9A 4J9XA 3PTJA 3W5WA 2MPBA 2HAWA 1GQZA 4RPAA 2ZVFA 2ZXOA 5H2GA 1W62A 2PW0A 5HA4A 2Q9JA 1XUAA 5M47A 5ANPA 1K23A 3DEVA 4LG3A 2KPTA 2QB6A
chains in the Genus database with same CATH topology
1TM0A 1IR6A 4DUNA 2YMAA 4IK0A 2QB8A 4LS9A 3IGHX 3PVHA 4J9WA 4JD7A 4K8LA 1U0KA 2ZXPA 1WPMA 2OTNA 2AZPA 2GKEA 4Q60A 4K7XA 4JCIA 1S7JA 1T6KA 2PVZA 1I74A 2GKJA 3G7KA 2ENXA 1U1WA 4JBDA 3EKMA 4PY9A 2LT2A 3G98A 1YM5A 2ZXRA 2EB0A 2Q9HA 4IJZA 1K20A 2IW4A 2KW7A 2QB7A 2H9FA 1WPPA 4JUUA 1U1VA 1W61A 4K7GB 5IWEA 1SDJA 4GL6A 1QYAA 1U1XA 4OA3A 3PW9A 3EJXA 5H2YA 4LB0A 1XUBA 3WQZA 4Q2HA 3EDNA 3FVEA 3ICJA 1BWZA 1QY9A 4J9XA 3PTJA 3W5WA 2MPBA 2HAWA 1GQZA 4RPAA 2ZVFA 2ZXOA 5H2GA 1W62A 2PW0A 5HA4A 2Q9JA 1XUAA 5M47A 5ANPA 1K23A 3DEVA 4LG3A 2KPTA 2QB6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1U1V A;  1W61 A;  2GKJ A;  3G7K A;  4K7G B;  1TM0 A;  1U1W A;  4DUN A;  5IWE A;  4J9X A;  4JBD A;  1SDJ A;  4IK0 A;  3EKM A;  1GQZ A;  1QYA A;  1U1X A;  5H2G A;  4J9W A;  1YM5 A;  1W62 A;  4JD7 A;  3EJX A;  5H2Y A;  4JUU A;  2Q9H A;  4IJZ A;  4K8L A;  2PW0 A;  1U0K A;  5HA4 A;  4LB0 A;  1XUB A;  2OTN A;  2AZP A;  2H9F A;  2Q9J A;  1XUA A;  5M47 A;  2GKE A;  4Q2H A;  4Q60 A;  4K7X A;  4JCI A;  1S7J A;  1T6K A;  3EDN A;  2PVZ A;  3FVE A;  1BWZ A;  1QY9 A; 
#chains in the Genus database with same CATH topology
 1TM0 A;  1IR6 A;  4DUN A;  2YMA A;  4IK0 A;  2QB8 A;  4LS9 A;  3IGH X;  3PVH A;  4J9W A;  4JD7 A;  4K8L A;  1U0K A;  2ZXP A;  1WPM A;  2OTN A;  2AZP A;  2GKE A;  4Q60 A;  4K7X A;  4JCI A;  1S7J A;  1T6K A;  2PVZ A;  1I74 A;  2GKJ A;  3G7K A;  2ENX A;  1U1W A;  4JBD A;  3EKM A;  4PY9 A;  2LT2 A;  3G98 A;  1YM5 A;  2ZXR A;  2EB0 A;  2Q9H A;  4IJZ A;  1K20 A;  2IW4 A;  2KW7 A;  2QB7 A;  2H9F A;  1WPP A;  4JUU A;  1U1V A;  1W61 A;  4K7G B;  5IWE A;  1SDJ A;  4GL6 A;  1QYA A;  1U1X A;  4OA3 A;  3PW9 A;  3EJX A;  5H2Y A;  4LB0 A;  1XUB A;  3WQZ A;  4Q2H A;  3EDN A;  3FVE A;  3ICJ A;  1BWZ A;  1QY9 A;  4J9X A;  3PTJ A;  3W5W A;  2MPB A;  2HAW A;  1GQZ A;  4RPA A;  2ZVF A;  2ZXO A;  5H2G A;  1W62 A;  2PW0 A;  5HA4 A;  2Q9J A;  1XUA A;  5M47 A;  5ANP A;  1K23 A;  3DEV A;  4LG3 A;  2KPT A;  2QB6 A; 
#chains in the Genus database with same CATH homology
 1TM0 A;  1IR6 A;  4DUN A;  2YMA A;  4IK0 A;  2QB8 A;  4LS9 A;  3IGH X;  3PVH A;  4J9W A;  4JD7 A;  4K8L A;  1U0K A;  2ZXP A;  1WPM A;  2OTN A;  2AZP A;  2GKE A;  4Q60 A;  4K7X A;  4JCI A;  1S7J A;  1T6K A;  2PVZ A;  1I74 A;  2GKJ A;  3G7K A;  2ENX A;  1U1W A;  4JBD A;  3EKM A;  4PY9 A;  2LT2 A;  3G98 A;  1YM5 A;  2ZXR A;  2EB0 A;  2Q9H A;  4IJZ A;  1K20 A;  2IW4 A;  2KW7 A;  2QB7 A;  2H9F A;  1WPP A;  4JUU A;  1U1V A;  1W61 A;  4K7G B;  5IWE A;  1SDJ A;  4GL6 A;  1QYA A;  1U1X A;  4OA3 A;  3PW9 A;  3EJX A;  5H2Y A;  4LB0 A;  1XUB A;  3WQZ A;  4Q2H A;  3EDN A;  3FVE A;  3ICJ A;  1BWZ A;  1QY9 A;  4J9X A;  3PTJ A;  3W5W A;  2MPB A;  2HAW A;  1GQZ A;  4RPA A;  2ZVF A;  2ZXO A;  5H2G A;  1W62 A;  2PW0 A;  5HA4 A;  2Q9J A;  1XUA A;  5M47 A;  5ANP A;  1K23 A;  3DEV A;  4LG3 A;  2KPT A;  2QB6 A; 
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similar chains in the pdb database (?% sequence similarity)

 
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