2Q9HA

Crystal structure of the c73s mutant of diaminopimelate epimerase
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
274
structure length
274
Chain Sequence
MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHYRIFNADGSEVSQSGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLCGAVSMGNPHCVVQVDDIQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Dynamics of catalysis revealed from the crystal structures of mutants of diaminopimelate epimerase.
pubmed doi rcsb
source organism Haemophilus influenzae
molecule tags Isomerase
molecule keywords Diaminopimelate epimerase
total genus 69
structure length 274
sequence length 274
ec nomenclature ec 5.1.1.7: Diaminopimelate epimerase.
pdb deposition date 2007-06-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01678 DAP_epimerase Diaminopimelate epimerase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 2q9hA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 2q9hA01
4LB0A 4J9WA 4JUUA 1XUAA 2PW0A 4JD7A 4IK0A 1SDJA 5M47A 4Q2HA 2Q9HA 1QY9A 1U1WA 1W62A 1S7JA 3FVEA 4J9XA 3EKMA 3EJXA 4DUNA 5IWEA 2PVZA 1U1VA 1TM0A 2OTNA 3G7KA 4IJZA 1BWZA 3EDNA 4K8LA 4JBDA 2GKEA 5H2GA 1XUBA 2Q9JA 4JCIA 5H2YA 1U1XA 4Q60A 4K7XA 2H9FA 1W61A 2AZPA 5HA4A 1QYAA 1YM5A 2GKJA 1U0KA 4K7GB 1GQZA 1T6KA
chains in the Genus database with same CATH superfamily
5M47A 4Q2HA 1QY9A 4DUNA 1TM0A 5ANPA 1BWZA 3EDNA 4GL6A 4K8LA 2ZVFA 1IR6A 1XUBA 5H2YA 2ZXRA 1W61A 1QYAA 2GKJA 1U0KA 3PVHA 4LB0A 4JD7A 4IK0A 3W5WA 2Q9HA 4PY9A 2LT2A 2YMAA 3FVEA 2PVZA 2KPTA 2ZXOA 3WQZA 1WPPA 4Q60A 2QB6A 2H9FA 3IGHX 1YM5A 1WPMA 1U1WA 1I74A 4J9WA 4JUUA 4OA3A 1W62A 1S7JA 3PW9A 3EKMA 3EJXA 5IWEA 2OTNA 3G7KA 2KW7A 2QB7A 1K23A 5H2GA 2QB8A 4JCIA 2PW0A 1T6KA 2IW4A 2ZXPA 1XUAA 4LG3A 1K20A 1SDJA 3DEVA 2EB0A 3G98A 4J9XA 2HAWA 4RPAA 1U1VA 4IJZA 2ENXA 4JBDA 3PTJA 2GKEA 2Q9JA 1U1XA 4K7XA 5HA4A 2AZPA 3ICJA 2MPBA 4LS9A 4K7GB 1GQZA
chains in the Genus database with same CATH topology
5M47A 4Q2HA 1QY9A 4DUNA 1TM0A 5ANPA 1BWZA 3EDNA 4GL6A 4K8LA 2ZVFA 1IR6A 1XUBA 5H2YA 2ZXRA 1W61A 1QYAA 2GKJA 1U0KA 3PVHA 4LB0A 4JD7A 4IK0A 3W5WA 2Q9HA 4PY9A 2LT2A 2YMAA 3FVEA 2PVZA 2KPTA 2ZXOA 3WQZA 1WPPA 4Q60A 2QB6A 2H9FA 3IGHX 1YM5A 1WPMA 1U1WA 1I74A 4J9WA 4JUUA 4OA3A 1W62A 1S7JA 3PW9A 3EKMA 3EJXA 5IWEA 2OTNA 3G7KA 2KW7A 2QB7A 1K23A 5H2GA 2QB8A 4JCIA 2PW0A 1T6KA 2IW4A 2ZXPA 1XUAA 4LG3A 1K20A 1SDJA 3DEVA 2EB0A 3G98A 4J9XA 2HAWA 4RPAA 1U1VA 4IJZA 2ENXA 4JBDA 3PTJA 2GKEA 2Q9JA 1U1XA 4K7XA 5HA4A 2AZPA 3ICJA 2MPBA 4LS9A 4K7GB 1GQZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LB0 A;  4J9W A;  4JUU A;  1XUA A;  2PW0 A;  4JD7 A;  4IK0 A;  1SDJ A;  5M47 A;  4Q2H A;  2Q9H A;  1QY9 A;  1U1W A;  1W62 A;  1S7J A;  3FVE A;  4J9X A;  3EKM A;  3EJX A;  4DUN A;  5IWE A;  2PVZ A;  1U1V A;  1TM0 A;  2OTN A;  3G7K A;  4IJZ A;  1BWZ A;  3EDN A;  4K8L A;  4JBD A;  2GKE A;  5H2G A;  1XUB A;  2Q9J A;  4JCI A;  5H2Y A;  1U1X A;  4Q60 A;  4K7X A;  2H9F A;  1W61 A;  2AZP A;  5HA4 A;  1QYA A;  1YM5 A;  2GKJ A;  1U0K A;  4K7G B;  1GQZ A;  1T6K A; 
#chains in the Genus database with same CATH topology
 5M47 A;  4Q2H A;  1QY9 A;  4DUN A;  1TM0 A;  5ANP A;  1BWZ A;  3EDN A;  4GL6 A;  4K8L A;  2ZVF A;  1IR6 A;  1XUB A;  5H2Y A;  2ZXR A;  1W61 A;  1QYA A;  2GKJ A;  1U0K A;  3PVH A;  4LB0 A;  4JD7 A;  4IK0 A;  3W5W A;  2Q9H A;  4PY9 A;  2LT2 A;  2YMA A;  3FVE A;  2PVZ A;  2KPT A;  2ZXO A;  3WQZ A;  1WPP A;  4Q60 A;  2QB6 A;  2H9F A;  3IGH X;  1YM5 A;  1WPM A;  1U1W A;  1I74 A;  4J9W A;  4JUU A;  4OA3 A;  1W62 A;  1S7J A;  3PW9 A;  3EKM A;  3EJX A;  5IWE A;  2OTN A;  3G7K A;  2KW7 A;  2QB7 A;  1K23 A;  5H2G A;  2QB8 A;  4JCI A;  2PW0 A;  1T6K A;  2IW4 A;  2ZXP A;  1XUA A;  4LG3 A;  1K20 A;  1SDJ A;  3DEV A;  2EB0 A;  3G98 A;  4J9X A;  2HAW A;  4RPA A;  1U1V A;  4IJZ A;  2ENX A;  4JBD A;  3PTJ A;  2GKE A;  2Q9J A;  1U1X A;  4K7X A;  5HA4 A;  2AZP A;  3ICJ A;  2MPB A;  4LS9 A;  4K7G B;  1GQZ A; 
#chains in the Genus database with same CATH homology
 5M47 A;  4Q2H A;  1QY9 A;  4DUN A;  1TM0 A;  5ANP A;  1BWZ A;  3EDN A;  4GL6 A;  4K8L A;  2ZVF A;  1IR6 A;  1XUB A;  5H2Y A;  2ZXR A;  1W61 A;  1QYA A;  2GKJ A;  1U0K A;  3PVH A;  4LB0 A;  4JD7 A;  4IK0 A;  3W5W A;  2Q9H A;  4PY9 A;  2LT2 A;  2YMA A;  3FVE A;  2PVZ A;  2KPT A;  2ZXO A;  3WQZ A;  1WPP A;  4Q60 A;  2QB6 A;  2H9F A;  3IGH X;  1YM5 A;  1WPM A;  1U1W A;  1I74 A;  4J9W A;  4JUU A;  4OA3 A;  1W62 A;  1S7J A;  3PW9 A;  3EKM A;  3EJX A;  5IWE A;  2OTN A;  3G7K A;  2KW7 A;  2QB7 A;  1K23 A;  5H2G A;  2QB8 A;  4JCI A;  2PW0 A;  1T6K A;  2IW4 A;  2ZXP A;  1XUA A;  4LG3 A;  1K20 A;  1SDJ A;  3DEV A;  2EB0 A;  3G98 A;  4J9X A;  2HAW A;  4RPA A;  1U1V A;  4IJZ A;  2ENX A;  4JBD A;  3PTJ A;  2GKE A;  2Q9J A;  1U1X A;  4K7X A;  5HA4 A;  2AZP A;  3ICJ A;  2MPB A;  4LS9 A;  4K7G B;  1GQZ A; 
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