2Q9HA

Crystal structure of the c73s mutant of diaminopimelate epimerase
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
274
structure length
274
Chain Sequence
b'MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHYRIFNADGSEVSQSGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGEPIWEPAKIPFTANKFEKNYILRTDIQTVLCGAVSMGNPHCVVQVDDIQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLLNNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Diaminopimelate epimerase
molecule tags Isomerase
source organism Haemophilus influenzae
publication title Dynamics of catalysis revealed from the crystal structures of mutants of diaminopimelate epimerase.
pubmed doi rcsb
total genus 69
structure length 274
sequence length 274
ec nomenclature ec 5.1.1.7: Diaminopimelate epimerase.
pdb deposition date 2007-06-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01678 DAP_epimerase Diaminopimelate epimerase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 2q9hA02
3.10.310.10 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 2q9hA01
1BWZA 3G7KA 4Q2HA 2GKJA 1U1WA 3EJXA 1XUAA 4IJZA 5H2YA 1QYAA 1W61A 1U1VA 4K7GB 1GQZA 1T6KA 2GKEA 2Q9JA 4LB0A 1TM0A 2PW0A 3EDNA 5H2GA 4K8LA 2OTNA 4JUUA 5HA4A 3FVEA 4J9XA 2H9FA 1YM5A 4IK0A 1QY9A 1XUBA 4DUNA 4Q60A 2PVZA 1S7JA 4J9WA 1SDJA 1U0KA 1U1XA 5IWEA 4JD7A 2AZPA 2Q9HA 3EKMA 4JBDA 4JCIA 5M47A 1W62A 4K7XA
chains in the Genus database with same CATH superfamily
1BWZA 3G7KA 4LG3A 1WPMA 2LT2A 1XUAA 5H2YA 1U1VA 2QB8A 2ZXPA 1WPPA 4LB0A 2IW4A 4K8LA 4JUUA 3W5WA 3WQZA 1XUBA 1K23A 2QB7A 1SDJA 2AZPA 2ENXA 4OA3A 5M47A 2QB6A 1W62A 3PTJA 2MPBA 2ZXRA 2GKJA 1U1WA 3EJXA 1GQZA 2Q9JA 3EDNA 2EB0A 5HA4A 3FVEA 4J9XA 2H9FA 4IK0A 2HAWA 2ZVFA 2PVZA 1S7JA 1U0KA 1I74A 2KPTA 3EKMA 3IGHX 4Q2HA 4IJZA 1QYAA 4K7GB 1IR6A 4GL6A 4LS9A 1TM0A 3PVHA 1YM5A 2YMAA 1QY9A 4DUNA 4Q60A 4RPAA 4JD7A 4K7XA 3DEVA 1W61A 2KW7A 1T6KA 4PY9A 2GKEA 5ANPA 3G98A 2PW0A 5H2GA 2OTNA 2ZXOA 4J9WA 1U1XA 5IWEA 1K20A 2Q9HA 3ICJA 4JBDA 4JCIA 3PW9A
chains in the Genus database with same CATH topology
1BWZA 3G7KA 4LG3A 1WPMA 2LT2A 1XUAA 5H2YA 1U1VA 2QB8A 2ZXPA 1WPPA 4LB0A 2IW4A 4K8LA 4JUUA 3W5WA 3WQZA 1XUBA 1K23A 2QB7A 1SDJA 2AZPA 2ENXA 4OA3A 5M47A 2QB6A 1W62A 3PTJA 2MPBA 2ZXRA 2GKJA 1U1WA 3EJXA 1GQZA 2Q9JA 3EDNA 2EB0A 5HA4A 3FVEA 4J9XA 2H9FA 4IK0A 2HAWA 2ZVFA 2PVZA 1S7JA 1U0KA 1I74A 2KPTA 3EKMA 3IGHX 4Q2HA 4IJZA 1QYAA 4K7GB 1IR6A 4GL6A 4LS9A 1TM0A 3PVHA 1YM5A 2YMAA 1QY9A 4DUNA 4Q60A 4RPAA 4JD7A 4K7XA 3DEVA 1W61A 2KW7A 1T6KA 4PY9A 2GKEA 5ANPA 3G98A 2PW0A 5H2GA 2OTNA 2ZXOA 4J9WA 1U1XA 5IWEA 1K20A 2Q9HA 3ICJA 4JBDA 4JCIA 3PW9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BWZ A;  3G7K A;  4Q2H A;  2GKJ A;  1U1W A;  3EJX A;  1XUA A;  4IJZ A;  5H2Y A;  1QYA A;  1W61 A;  1U1V A;  4K7G B;  1GQZ A;  1T6K A;  2GKE A;  2Q9J A;  4LB0 A;  1TM0 A;  2PW0 A;  3EDN A;  5H2G A;  4K8L A;  2OTN A;  4JUU A;  5HA4 A;  3FVE A;  4J9X A;  2H9F A;  1YM5 A;  4IK0 A;  1QY9 A;  1XUB A;  4DUN A;  4Q60 A;  2PVZ A;  1S7J A;  4J9W A;  1SDJ A;  1U0K A;  1U1X A;  5IWE A;  4JD7 A;  2AZP A;  2Q9H A;  3EKM A;  4JBD A;  4JCI A;  5M47 A;  1W62 A;  4K7X A; 
#chains in the Genus database with same CATH topology
 1BWZ A;  3G7K A;  4LG3 A;  1WPM A;  2LT2 A;  1XUA A;  5H2Y A;  1U1V A;  2QB8 A;  2ZXP A;  1WPP A;  4LB0 A;  2IW4 A;  4K8L A;  4JUU A;  3W5W A;  3WQZ A;  1XUB A;  1K23 A;  2QB7 A;  1SDJ A;  2AZP A;  2ENX A;  4OA3 A;  5M47 A;  2QB6 A;  1W62 A;  3PTJ A;  2MPB A;  2ZXR A;  2GKJ A;  1U1W A;  3EJX A;  1GQZ A;  2Q9J A;  3EDN A;  2EB0 A;  5HA4 A;  3FVE A;  4J9X A;  2H9F A;  4IK0 A;  2HAW A;  2ZVF A;  2PVZ A;  1S7J A;  1U0K A;  1I74 A;  2KPT A;  3EKM A;  3IGH X;  4Q2H A;  4IJZ A;  1QYA A;  4K7G B;  1IR6 A;  4GL6 A;  4LS9 A;  1TM0 A;  3PVH A;  1YM5 A;  2YMA A;  1QY9 A;  4DUN A;  4Q60 A;  4RPA A;  4JD7 A;  4K7X A;  3DEV A;  1W61 A;  2KW7 A;  1T6K A;  4PY9 A;  2GKE A;  5ANP A;  3G98 A;  2PW0 A;  5H2G A;  2OTN A;  2ZXO A;  4J9W A;  1U1X A;  5IWE A;  1K20 A;  2Q9H A;  3ICJ A;  4JBD A;  4JCI A;  3PW9 A; 
#chains in the Genus database with same CATH homology
 1BWZ A;  3G7K A;  4LG3 A;  1WPM A;  2LT2 A;  1XUA A;  5H2Y A;  1U1V A;  2QB8 A;  2ZXP A;  1WPP A;  4LB0 A;  2IW4 A;  4K8L A;  4JUU A;  3W5W A;  3WQZ A;  1XUB A;  1K23 A;  2QB7 A;  1SDJ A;  2AZP A;  2ENX A;  4OA3 A;  5M47 A;  2QB6 A;  1W62 A;  3PTJ A;  2MPB A;  2ZXR A;  2GKJ A;  1U1W A;  3EJX A;  1GQZ A;  2Q9J A;  3EDN A;  2EB0 A;  5HA4 A;  3FVE A;  4J9X A;  2H9F A;  4IK0 A;  2HAW A;  2ZVF A;  2PVZ A;  1S7J A;  1U0K A;  1I74 A;  2KPT A;  3EKM A;  3IGH X;  4Q2H A;  4IJZ A;  1QYA A;  4K7G B;  1IR6 A;  4GL6 A;  4LS9 A;  1TM0 A;  3PVH A;  1YM5 A;  2YMA A;  1QY9 A;  4DUN A;  4Q60 A;  4RPA A;  4JD7 A;  4K7X A;  3DEV A;  1W61 A;  2KW7 A;  1T6K A;  4PY9 A;  2GKE A;  5ANP A;  3G98 A;  2PW0 A;  5H2G A;  2OTN A;  2ZXO A;  4J9W A;  1U1X A;  5IWE A;  1K20 A;  2Q9H A;  3ICJ A;  4JBD A;  4JCI A;  3PW9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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