2QA4E

A more complete structure of the the l7/l12 stalk of the haloarcula marismortui 50s large ribosomal subunit
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
172
structure length
172
Chain Sequence
PRVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of the base of the L7/L12 stalk of the Haloarcula marismortui large ribosomal subunit: Analysis of L11 movements
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 23S RIBOSOMAL RNA
total genus 36
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 2007-06-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 2qa4E02
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 2qa4E01
4WFBE 2QEXE 3G6EE 4IO9E 3J7ZG 1VQ8E 3CXCE 1VQKE 5GADG 3CPWE 4IOCE 1S72E 3CCJE 5DM7E 2OTJE 1K8AG 5DM6E 1RL6A 3CCVE 3CCEE 1VQME 1VQ7E 3CC7E 1M90G 1K73G 5GAHG 1VQ9E 3CMEE 2OTLE 1Q7YG 4IOAE 3CCSE 1VQPE 3CCME 1VQNE 1QVGE 3CD6E 3CC2E 1YI2E 3PIOE 1W2BE 4UY8G 5GAEG 3G4SE 3CC4E 2QA4E 1M1KG 1KD1G 3CF5E 2ZJPE 1VQLE 3OW2E 4WFAE 1K9MG 3CCQE 1VQ6E 3CCUE 1VQOE 1N8RG 3CCLE 3I56E 5AN9B 1KQSE 4WF9E 5JVHE 5GAGG 1Q81G 1VQ4E 1YIJE 4WFNE 4U67E 3CCRE 2ZJRE 5H1SI 1NJIG 1YJ9E 1YJNE 2CQLA 3I55E 1KC8G 3PIPE 1JJ2E 5MLCH 3CMAE 1YITE 1VQ5E 1YJWE 5HL7E 1QVFE 1Q82G 4WCEE 5JVGE 2ZJQE 3DLLE 1YHQE 1Q86G 3G71E
chains in the Genus database with same CATH superfamily
2I5ZO 4WFBE 2QEXE 3G6EE 4IO9E 3J7ZG 3EC5A 1VQ8E 2OY7A 3CXCE 1VQKE 5GADG 3CPWE 4IOCE 2OY8A 1S72E 3CCJE 5DM7E 2OTJE 1K8AG 5DM6E 1RL6A 3CCVE 2HKDA 2FKJA 3CCEE 2OY5O 1VQME 1VQ7E 3CC7E 1M90G 1K73G 2OY1O 5GAHG 1VQ9E 3CMEE 2OTLE 1Q7YG 4IOAE 3CCSE 1VQPE 3CCME 1VQNE 1QVGE 3CD6E 3CC2E 1YI2E 3PIOE 3CKFA 1W2BE 4UY8G 5GAEG 3G4SE 3CC4E 2QA4E 1M1KG 1KD1G 3CF5E 1P4PA 5B10O 2ZJPE 2OL6O 2OL8O 2OYBO 2I5VO 3OW2E 1VQLE 4WFAE 1K9MG 3CCQE 1VQ6E 1OSPO 3CCUE 1VQOE 1N8RG 3CCLE 3I56E 5AN9B 1KQSE 3AUMO 5B3MO 4WF9E 5JVHE 5GAGG 1Q81G 1VQ4E 1YIJE 5B2AO 4WFNE 4U67E 3CCRE 2OL7A 2ZJRE 2PI3O 5H1SI 1NJIG 1YJ9E 1YJNE 2CQLA 1FJ1E 3IG9A 1RJLC 3I55E 1KC8G 3PIPE 1JJ2E 5MLCH 3CMAE 1YITE 1VQ5E 1YJWE 5HL7E 1QVFE 1Q82G 4WCEE 5JVGE 2ZJQE 2G8CO 2FKGA 5B11O 3DLLE 2AF5A 1YHQE 1Q86G 3CKGA 3IGEA 3G71E
chains in the Genus database with same CATH topology
4WFBE 2QEXE 3G6EE 4IO9E 3J7ZG 1VQ8E 3CXCE 1VQKE 5GADG 3CPWE 4IOCE 1S72E 3CCJE 5DM7E 2OTJE 1K8AG 5DM6E 1RL6A 3CCVE 3CCEE 1VQME 1VQ7E 3CC7E 1M90G 1K73G 5GAHG 1VQ9E 3CMEE 2OTLE 1Q7YG 4IOAE 3CCSE 1VQPE 3CCME 1VQNE 1QVGE 3CD6E 3CC2E 1YI2E 3PIOE 1W2BE 4UY8G 5GAEG 3G4SE 3CC4E 2QA4E 1M1KG 1KD1G 3CF5E 2ZJPE 1VQLE 3OW2E 4WFAE 1K9MG 3CCQE 1VQ6E 3CCUE 1VQOE 1N8RG 3CCLE 3I56E 5AN9B 1KQSE 4WF9E 5JVHE 5GAGG 1Q81G 1VQ4E 1YIJE 4WFNE 4U67E 3CCRE 2ZJRE 5H1SI 1NJIG 1YJ9E 1YJNE 2CQLA 3I55E 1KC8G 3PIPE 1JJ2E 5MLCH 3CMAE 1YITE 1VQ5E 1YJWE 5HL7E 1QVFE 1Q82G 4WCEE 5JVGE 2ZJQE 3DLLE 1YHQE 1Q86G 3G71E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WFB E;  2QEX E;  3G6E E;  4IO9 E;  3J7Z G;  1VQ8 E;  3CXC E;  1VQK E;  5GAD G;  3CPW E;  4IOC E;  1S72 E;  3CCJ E;  5DM7 E;  2OTJ E;  1K8A G;  5DM6 E;  1RL6 A;  3CCV E;  3CCE E;  1VQM E;  1VQ7 E;  3CC7 E;  1M90 G;  1K73 G;  5GAH G;  1VQ9 E;  3CME E;  2OTL E;  1Q7Y G;  4IOA E;  3CCS E;  1VQP E;  3CCM E;  1VQN E;  1QVG E;  3CD6 E;  3CC2 E;  1YI2 E;  3PIO E;  1W2B E;  4UY8 G;  5GAE G;  3G4S E;  3CC4 E;  2QA4 E;  1M1K G;  1KD1 G;  3CF5 E;  2ZJP E;  1VQL E;  3OW2 E;  4WFA E;  1K9M G;  3CCQ E;  1VQ6 E;  3CCU E;  1VQO E;  1N8R G;  3CCL E;  3I56 E;  5AN9 B;  1KQS E;  4WF9 E;  5JVH E;  5GAG G;  1Q81 G;  1VQ4 E;  1YIJ E;  4WFN E;  4U67 E;  3CCR E;  2ZJR E;  5H1S I;  1NJI G;  1YJ9 E;  1YJN E;  2CQL A;  3I55 E;  1KC8 G;  3PIP E;  1JJ2 E;  5MLC H;  3CMA E;  1YIT E;  1VQ5 E;  1YJW E;  5HL7 E;  1QVF E;  1Q82 G;  4WCE E;  5JVG E;  2ZJQ E;  3DLL E;  1YHQ E;  1Q86 G;  3G71 E; 
#chains in the Genus database with same CATH topology
 2I5Z O;  4WFB E;  2QEX E;  3G6E E;  4IO9 E;  3J7Z G;  3EC5 A;  1VQ8 E;  2OY7 A;  3CXC E;  1VQK E;  5GAD G;  3CPW E;  4IOC E;  2OY8 A;  1S72 E;  3CCJ E;  5DM7 E;  2OTJ E;  1K8A G;  5DM6 E;  1RL6 A;  3CCV E;  2HKD A;  2FKJ A;  3CCE E;  2OY5 O;  1VQM E;  1VQ7 E;  3CC7 E;  1M90 G;  1K73 G;  2OY1 O;  5GAH G;  1VQ9 E;  3CME E;  2OTL E;  1Q7Y G;  4IOA E;  3CCS E;  1VQP E;  3CCM E;  1VQN E;  1QVG E;  3CD6 E;  3CC2 E;  1YI2 E;  3PIO E;  3CKF A;  1W2B E;  4UY8 G;  5GAE G;  3G4S E;  3CC4 E;  2QA4 E;  1M1K G;  1KD1 G;  3CF5 E;  1P4P A;  5B10 O;  2ZJP E;  2OL6 O;  2OL8 O;  2OYB O;  2I5V O;  3OW2 E;  1VQL E;  4WFA E;  1K9M G;  3CCQ E;  1VQ6 E;  1OSP O;  3CCU E;  1VQO E;  1N8R G;  3CCL E;  3I56 E;  5AN9 B;  1KQS E;  3AUM O;  5B3M O;  4WF9 E;  5JVH E;  5GAG G;  1Q81 G;  1VQ4 E;  1YIJ E;  5B2A O;  4WFN E;  4U67 E;  3CCR E;  2OL7 A;  2ZJR E;  2PI3 O;  5H1S I;  1NJI G;  1YJ9 E;  1YJN E;  2CQL A;  1FJ1 E;  3IG9 A;  1RJL C;  3I55 E;  1KC8 G;  3PIP E;  1JJ2 E;  5MLC H;  3CMA E;  1YIT E;  1VQ5 E;  1YJW E;  5HL7 E;  1QVF E;  1Q82 G;  4WCE E;  5JVG E;  2ZJQ E;  2G8C O;  2FKG A;  5B11 O;  3DLL E;  2AF5 A;  1YHQ E;  1Q86 G;  3CKG A;  3IGE A;  3G71 E; 
#chains in the Genus database with same CATH homology
 4WFB E;  2QEX E;  3G6E E;  4IO9 E;  3J7Z G;  1VQ8 E;  3CXC E;  1VQK E;  5GAD G;  3CPW E;  4IOC E;  1S72 E;  3CCJ E;  5DM7 E;  2OTJ E;  1K8A G;  5DM6 E;  1RL6 A;  3CCV E;  3CCE E;  1VQM E;  1VQ7 E;  3CC7 E;  1M90 G;  1K73 G;  5GAH G;  1VQ9 E;  3CME E;  2OTL E;  1Q7Y G;  4IOA E;  3CCS E;  1VQP E;  3CCM E;  1VQN E;  1QVG E;  3CD6 E;  3CC2 E;  1YI2 E;  3PIO E;  1W2B E;  4UY8 G;  5GAE G;  3G4S E;  3CC4 E;  2QA4 E;  1M1K G;  1KD1 G;  3CF5 E;  2ZJP E;  1VQL E;  3OW2 E;  4WFA E;  1K9M G;  3CCQ E;  1VQ6 E;  3CCU E;  1VQO E;  1N8R G;  3CCL E;  3I56 E;  5AN9 B;  1KQS E;  4WF9 E;  5JVH E;  5GAG G;  1Q81 G;  1VQ4 E;  1YIJ E;  4WFN E;  4U67 E;  3CCR E;  2ZJR E;  5H1S I;  1NJI G;  1YJ9 E;  1YJN E;  2CQL A;  3I55 E;  1KC8 G;  3PIP E;  1JJ2 E;  5MLC H;  3CMA E;  1YIT E;  1VQ5 E;  1YJW E;  5HL7 E;  1QVF E;  1Q82 G;  4WCE E;  5JVG E;  2ZJQ E;  3DLL E;  1YHQ E;  1Q86 G;  3G71 E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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