2QBUA

Crystal structure of methanothermobacter thermautotrophicus cbil
Total Genus 64
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
64
sequence length
228
structure length
228
Chain Sequence
MHGKLIGVGVGPGDSELLTLRAVNVLRSVPVICAPRSSSERESIALSIVEDILTERRDGCRILDPVFPMTDDRDELESHWDSAARMVAAELEDGRDVAFITLGDPSIYSTFSYLQQRIEDMGFKTEMVPGVTSFTACAATAGRTLVEGDEILLVVPRVDDRFERVLRDVDACVIMKTSRHGRRAMEVVESDPRGKDVVSVANCSMDDEVVERGFASGGGYLATTLVRF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Elucidation of substrate specificity in the cobalamin (vitamin B12) biosynthetic methyltransferases. Structure and function of the C20 methyltransferase (CbiL) from Methanothermobacter thermautotrophicus.
pubmed doi rcsb
source organism Methanothermobacter thermautotrophicus
molecule tags Transferase
molecule keywords Precorrin-2 methyltransferase
total genus 64
structure length 228
sequence length 228
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-06-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00590 TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.950.10 Alpha Beta 2-Layer Sandwich Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 2qbuA02
3.40.1010.10 Alpha Beta 3-Layer(aba) Sandwich Cobalt-precorrin-4 Transmethylase; domain 1 Cobalt-precorrin-4 Transmethylase; Domain 1 2qbuA01
2DXWA 2EK3A 2DXVA 2EH2A 3FFYA 2QBUA 2E0NA 2HUTA 2EH4A 1CBFA 1PJQA 2EKAA 2OWFA 2E0KA 1VE2A 2DV4A 2E4RA 2E15A 2P9DA 2P5FA 2EL2A 3FQ6A 2E7RA 2ELEA 2BB3A 2P6LA 2EGSA 2EK7A 2P5CA 2ZVBA 2ZVCA 1VA0A 2E8SA 3ND1A 4E16A 2EH5A 3KWPA 2YBOA 1WDEA 2E8HA 2HR8A 2YBQA 2DXXA 2DV3A 2EGLA 2EMRA 2HUVA 2PCMA 2E16A 2NPNA 2DSGA 3I4TA 3HH1A 2PCHA 2ED3A 2PCAA 1WNGA 2PCIA 2PB6A 2E8QA 1VHVA 2EHLA 2EEQA 2P2XA 2Z6RA 3NUTA 2EK4A 1S4DA 2ED5A 2EL1A 2EK2A 2EL3A 2E07A 2EJKA 2E8RA 3NDCA 2OWGA 1WYZA 2ENIA 2PCGA 2HUQA 2EHCA 2EGBA 2HUXA 2P6IA 2DSIA 2DSHA 2EJZA 2EJJA 2OWUA 1PJSA 2E4NA 2PCKA 2E17A 2PB5A 2DEKA 2ELDA 2OWKA 2DV7A 2PB4A 3NEIA 5HW4A 2P6KA 2CBFA 2EN5A 2DV5A 1V9AA 1VCEA 1PJTA 2EL0A 2P6DA 2E08A 2OWVA 2EMUA
chains in the Genus database with same CATH superfamily
3ZGLA 2DXWA 2EK3A 2DXVA 2EH2A 3FFYA 2KYYA 3UV6A 4H4CA 2QBUA 2E0NA 2HUTA 3KELA 2EH4A 1CBFA 1PJQA 2EKAA 2OWFA 2E0KA 3T0FA 3ZGNA 1VE2A 3SZUA 2DV4A 2E4RA 2E15A 2P9DA 3UV7A 2P5FA 2EL2A 3FQ6A 3URKA 2E7RA 2ELEA 2BB3A 4EB3A 2P6LA 2EGSA 2EK7A 2P5CA 3KEMA 3UTCA 3UTDA 2ZVBA 2ZVCA 4N7BA 1VA0A 2E8SA 3ND1A 4E16A 4MV0A 2EH5A 3KWPA 2YBOA 3TIXB 1WDEA 2E8HA 2HR8A 2YBQA 2DXXA 2DV3A 2EGLA 2EMRA 2HUVA 2PCMA 2E16A 2NPNA 2DSGA 3I4TA 3HH1A 2PCHA 2ED3A 2PCAA 1WNGA 2PCIA 2PB6A 4MUYA 3DNFA 2E8QA 1VHVA 2EHLA 2EEQA 2P2XA 2Z6RA 3NUTA 2EK4A 1S4DA 2ED5A 2EL1A 3T0GA 3UV3A 2EK2A 3KE9A 2EL3A 2E07A 2EJKA 2E8RA 3NDCA 2OWGA 3UWMA 1WYZA 2ENIA 2PCGA 2HUQA 4H4EA 2EHCA 2EGBA 2HUXA 2P6IA 4MV5A 2DSIA 2DSHA 2EJZA 2EJJA 4MUXA 2OWUA 1PJSA 2E4NA 2PCKA 2E17A 3SZLA 2PB5A 2DEKA 2ELDA 2OWKA 3F7TA 2DV7A 2PB4A 3NEIA 5HW4A 2P6KA 3KE8A 2CBFA 2EN5A 3KEFA 2DV5A 1V9AA 1VCEA 1PJTA 3LMMA 2EL0A 2P6DA 2E08A 2OWVA 3SZOA 2EMUA 4H4DA
chains in the Genus database with same CATH topology
3ZGLA 2DXWA 2EK3A 2DXVA 2EH2A 3FFYA 2KYYA 3UV6A 4H4CA 2QBUA 2E0NA 2HUTA 3KELA 2EH4A 1CBFA 1PJQA 2EKAA 2OWFA 2E0KA 3T0FA 3ZGNA 1VE2A 3SZUA 2DV4A 2E4RA 2E15A 2P9DA 3UV7A 2P5FA 2EL2A 3FQ6A 3URKA 2E7RA 2ELEA 2BB3A 4EB3A 2P6LA 2EGSA 2EK7A 2P5CA 3KEMA 3UTCA 3UTDA 2ZVBA 2ZVCA 4N7BA 1VA0A 2E8SA 3ND1A 4E16A 4MV0A 2EH5A 3KWPA 2YBOA 3TIXB 1WDEA 2E8HA 2HR8A 2YBQA 2DXXA 2DV3A 2EGLA 2EMRA 2HUVA 2PCMA 2E16A 2NPNA 2DSGA 3I4TA 3HH1A 2PCHA 2ED3A 2PCAA 1WNGA 2PCIA 2PB6A 4MUYA 3DNFA 2E8QA 1VHVA 2EHLA 2EEQA 2P2XA 2Z6RA 3NUTA 2EK4A 1S4DA 2ED5A 2EL1A 3T0GA 3UV3A 2EK2A 3KE9A 2EL3A 2E07A 2EJKA 2E8RA 3NDCA 2OWGA 3UWMA 1WYZA 2ENIA 2PCGA 2HUQA 4H4EA 2EHCA 2EGBA 2HUXA 2P6IA 4MV5A 2DSIA 2DSHA 2EJZA 2EJJA 4MUXA 2OWUA 1PJSA 2E4NA 2PCKA 2E17A 3SZLA 2PB5A 2DEKA 2ELDA 2OWKA 3F7TA 2DV7A 2PB4A 3NEIA 5HW4A 2P6KA 3KE8A 2CBFA 2EN5A 3KEFA 2DV5A 1V9AA 1VCEA 1PJTA 3LMMA 2EL0A 2P6DA 2E08A 2OWVA 3SZOA 2EMUA 4H4DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DXW A;  2EK3 A;  2DXV A;  2EH2 A;  3FFY A;  2QBU A;  2E0N A;  2HUT A;  2EH4 A;  1CBF A;  1PJQ A;  2EKA A;  2OWF A;  2E0K A;  1VE2 A;  2DV4 A;  2E4R A;  2E15 A;  2P9D A;  2P5F A;  2EL2 A;  3FQ6 A;  2E7R A;  2ELE A;  2BB3 A;  2P6L A;  2EGS A;  2EK7 A;  2P5C A;  2ZVB A;  2ZVC A;  1VA0 A;  2E8S A;  3ND1 A;  4E16 A;  2EH5 A;  3KWP A;  2YBO A;  1WDE A;  2E8H A;  2HR8 A;  2YBQ A;  2DXX A;  2DV3 A;  2EGL A;  2EMR A;  2HUV A;  2PCM A;  2E16 A;  2NPN A;  2DSG A;  3I4T A;  3HH1 A;  2PCH A;  2ED3 A;  2PCA A;  1WNG A;  2PCI A;  2PB6 A;  2E8Q A;  1VHV A;  2EHL A;  2EEQ A;  2P2X A;  2Z6R A;  3NUT A;  2EK4 A;  1S4D A;  2ED5 A;  2EL1 A;  2EK2 A;  2EL3 A;  2E07 A;  2EJK A;  2E8R A;  3NDC A;  2OWG A;  1WYZ A;  2ENI A;  2PCG A;  2HUQ A;  2EHC A;  2EGB A;  2HUX A;  2P6I A;  2DSI A;  2DSH A;  2EJZ A;  2EJJ A;  2OWU A;  1PJS A;  2E4N A;  2PCK A;  2E17 A;  2PB5 A;  2DEK A;  2ELD A;  2OWK A;  2DV7 A;  2PB4 A;  3NEI A;  5HW4 A;  2P6K A;  2CBF A;  2EN5 A;  2DV5 A;  1V9A A;  1VCE A;  1PJT A;  2EL0 A;  2P6D A;  2E08 A;  2OWV A;  2EMU A; 
#chains in the Genus database with same CATH topology
 3ZGL A;  2DXW A;  2EK3 A;  2DXV A;  2EH2 A;  3FFY A;  2KYY A;  3UV6 A;  4H4C A;  2QBU A;  2E0N A;  2HUT A;  3KEL A;  2EH4 A;  1CBF A;  1PJQ A;  2EKA A;  2OWF A;  2E0K A;  3T0F A;  3ZGN A;  1VE2 A;  3SZU A;  2DV4 A;  2E4R A;  2E15 A;  2P9D A;  3UV7 A;  2P5F A;  2EL2 A;  3FQ6 A;  3URK A;  2E7R A;  2ELE A;  2BB3 A;  4EB3 A;  2P6L A;  2EGS A;  2EK7 A;  2P5C A;  3KEM A;  3UTC A;  3UTD A;  2ZVB A;  2ZVC A;  4N7B A;  1VA0 A;  2E8S A;  3ND1 A;  4E16 A;  4MV0 A;  2EH5 A;  3KWP A;  2YBO A;  3TIX B;  1WDE A;  2E8H A;  2HR8 A;  2YBQ A;  2DXX A;  2DV3 A;  2EGL A;  2EMR A;  2HUV A;  2PCM A;  2E16 A;  2NPN A;  2DSG A;  3I4T A;  3HH1 A;  2PCH A;  2ED3 A;  2PCA A;  1WNG A;  2PCI A;  2PB6 A;  4MUY A;  3DNF A;  2E8Q A;  1VHV A;  2EHL A;  2EEQ A;  2P2X A;  2Z6R A;  3NUT A;  2EK4 A;  1S4D A;  2ED5 A;  2EL1 A;  3T0G A;  3UV3 A;  2EK2 A;  3KE9 A;  2EL3 A;  2E07 A;  2EJK A;  2E8R A;  3NDC A;  2OWG A;  3UWM A;  1WYZ A;  2ENI A;  2PCG A;  2HUQ A;  4H4E A;  2EHC A;  2EGB A;  2HUX A;  2P6I A;  4MV5 A;  2DSI A;  2DSH A;  2EJZ A;  2EJJ A;  4MUX A;  2OWU A;  1PJS A;  2E4N A;  2PCK A;  2E17 A;  3SZL A;  2PB5 A;  2DEK A;  2ELD A;  2OWK A;  3F7T A;  2DV7 A;  2PB4 A;  3NEI A;  5HW4 A;  2P6K A;  3KE8 A;  2CBF A;  2EN5 A;  3KEF A;  2DV5 A;  1V9A A;  1VCE A;  1PJT A;  3LMM A;  2EL0 A;  2P6D A;  2E08 A;  2OWV A;  3SZO A;  2EMU A;  4H4D A; 
#chains in the Genus database with same CATH homology
 3ZGL A;  2DXW A;  2EK3 A;  2DXV A;  2EH2 A;  3FFY A;  2KYY A;  3UV6 A;  4H4C A;  2QBU A;  2E0N A;  2HUT A;  3KEL A;  2EH4 A;  1CBF A;  1PJQ A;  2EKA A;  2OWF A;  2E0K A;  3T0F A;  3ZGN A;  1VE2 A;  3SZU A;  2DV4 A;  2E4R A;  2E15 A;  2P9D A;  3UV7 A;  2P5F A;  2EL2 A;  3FQ6 A;  3URK A;  2E7R A;  2ELE A;  2BB3 A;  4EB3 A;  2P6L A;  2EGS A;  2EK7 A;  2P5C A;  3KEM A;  3UTC A;  3UTD A;  2ZVB A;  2ZVC A;  4N7B A;  1VA0 A;  2E8S A;  3ND1 A;  4E16 A;  4MV0 A;  2EH5 A;  3KWP A;  2YBO A;  3TIX B;  1WDE A;  2E8H A;  2HR8 A;  2YBQ A;  2DXX A;  2DV3 A;  2EGL A;  2EMR A;  2HUV A;  2PCM A;  2E16 A;  2NPN A;  2DSG A;  3I4T A;  3HH1 A;  2PCH A;  2ED3 A;  2PCA A;  1WNG A;  2PCI A;  2PB6 A;  4MUY A;  3DNF A;  2E8Q A;  1VHV A;  2EHL A;  2EEQ A;  2P2X A;  2Z6R A;  3NUT A;  2EK4 A;  1S4D A;  2ED5 A;  2EL1 A;  3T0G A;  3UV3 A;  2EK2 A;  3KE9 A;  2EL3 A;  2E07 A;  2EJK A;  2E8R A;  3NDC A;  2OWG A;  3UWM A;  1WYZ A;  2ENI A;  2PCG A;  2HUQ A;  4H4E A;  2EHC A;  2EGB A;  2HUX A;  2P6I A;  4MV5 A;  2DSI A;  2DSH A;  2EJZ A;  2EJJ A;  4MUX A;  2OWU A;  1PJS A;  2E4N A;  2PCK A;  2E17 A;  3SZL A;  2PB5 A;  2DEK A;  2ELD A;  2OWK A;  3F7T A;  2DV7 A;  2PB4 A;  3NEI A;  5HW4 A;  2P6K A;  3KE8 A;  2CBF A;  2EN5 A;  3KEF A;  2DV5 A;  1V9A A;  1VCE A;  1PJT A;  3LMM A;  2EL0 A;  2P6D A;  2E08 A;  2OWV A;  3SZO A;  2EMU A;  4H4D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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