2QEUA

Crystal structure of putative carboxymuconolactone decarboxylase (yp_555818.1) from burkholderia xenovorans lb400 at 1.65 a resolution
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
132
structure length
132
Chain Sequence
ATSQDILKQHAAHYESDMGGLPEALVQLAEYAPETFDAYSRMRTTMLKSEADGAKLPLKYKHLILVVLDAIRDEPIGIVNHTRAAMNAGLSVDELIEGILLGIIVYGMPAWGKTGRKAVTFAVEFEKELAGK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Putative carboxymuconolactone decarboxylase
publication title Crystal structure of Putative carboxymuconolactone decarboxylase (YP_555818.1) from Burkholderia xenovorans LB400 at 1.65 A resolution
rcsb
source organism Burkholderia xenovorans
total genus 45
structure length 132
sequence length 132
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2007-06-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02627 CMD Carboxymuconolactone decarboxylase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1290.10 Mainly Alpha Up-down Bundle AhpD-like AhpD-like 2qeuA00
2O4DA 2OYOA 1P8CA 3C1LA 2AF7A 2IJCA 2PFXA 2PRRA 2GMYA 3D7IA 1ME5A 3LVYA 4G9QA 3BEYA 1VKEA 5DIKA 2CWQA 1GU9A 2OUWA 5DIPA 2QEUA 1KNCA 1LW1A 2Q0TA
chains in the Genus database with same CATH superfamily
2O4DA 2KZ7A 2OYOA 3AAEA 1P8CA 5ADXK 3LK3A 3C1LA 2AF7A 2IJCA 3AA7A 2PFXA 4AKRA 2PRRA 2GMYA 1IZNA 3AAAA 3D7IA 1ME5A 3LVYA 4G9QA 2ES9A 3BEYA 3LK41 1VKEA 3AA0A 3AA6A 2JN8A 3LK2A 5AFUK 5DIKA 2CWQA 1GU9A 2OUWA 2KXPA 5DIPA 2QEUA 1KNCA 1LW1A 2Q0TA 3AA1A
chains in the Genus database with same CATH topology
2O4DA 2KZ7A 2OYOA 3AAEA 1P8CA 5ADXK 3LK3A 3C1LA 2AF7A 2IJCA 3AA7A 2PFXA 4AKRA 2PRRA 2GMYA 1IZNA 3AAAA 3D7IA 1ME5A 3LVYA 4G9QA 2ES9A 3BEYA 3LK41 1VKEA 3AA0A 3AA6A 2JN8A 3LK2A 5AFUK 5DIKA 2CWQA 1GU9A 2OUWA 2KXPA 5DIPA 2QEUA 1KNCA 1LW1A 2Q0TA 3AA1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O4D A;  2OYO A;  1P8C A;  3C1L A;  2AF7 A;  2IJC A;  2PFX A;  2PRR A;  2GMY A;  3D7I A;  1ME5 A;  3LVY A;  4G9Q A;  3BEY A;  1VKE A;  5DIK A;  2CWQ A;  1GU9 A;  2OUW A;  5DIP A;  2QEU A;  1KNC A;  1LW1 A;  2Q0T A; 
#chains in the Genus database with same CATH topology
 2O4D A;  2KZ7 A;  2OYO A;  3AAE A;  1P8C A;  5ADX K;  3LK3 A;  3C1L A;  2AF7 A;  2IJC A;  3AA7 A;  2PFX A;  4AKR A;  2PRR A;  2GMY A;  1IZN A;  3AAA A;  3D7I A;  1ME5 A;  3LVY A;  4G9Q A;  2ES9 A;  3BEY A;  3LK4 1;  1VKE A;  3AA0 A;  3AA6 A;  2JN8 A;  3LK2 A;  5AFU K;  5DIK A;  2CWQ A;  1GU9 A;  2OUW A;  2KXP A;  5DIP A;  2QEU A;  1KNC A;  1LW1 A;  2Q0T A;  3AA1 A; 
#chains in the Genus database with same CATH homology
 2O4D A;  2KZ7 A;  2OYO A;  3AAE A;  1P8C A;  5ADX K;  3LK3 A;  3C1L A;  2AF7 A;  2IJC A;  3AA7 A;  2PFX A;  4AKR A;  2PRR A;  2GMY A;  1IZN A;  3AAA A;  3D7I A;  1ME5 A;  3LVY A;  4G9Q A;  2ES9 A;  3BEY A;  3LK4 1;  1VKE A;  3AA0 A;  3AA6 A;  2JN8 A;  3LK2 A;  5AFU K;  5DIK A;  2CWQ A;  1GU9 A;  2OUW A;  2KXP A;  5DIP A;  2QEU A;  1KNC A;  1LW1 A;  2Q0T A;  3AA1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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