2QFDA

Crystal structure of the regulatory domain of human rig-i with bound hg
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
121
structure length
121
Chain Sequence
KENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGIHVKYKTFEIPVIKIESFVVEDIATGVQTLYSKWKDFHFEKIPFDPAEM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Probable ATP-dependent RNA helicase DDX58
publication title The C-Terminal Regulatory Domain Is the RNA 5'-Triphosphate Sensor of RIG-I.
pubmed doi rcsb
source organism Homo sapiens
total genus 23
structure length 121
sequence length 121
chains with identical sequence B, C, D, E, F, G, H, I, J
ec nomenclature ec 3.6.4.13: RNA helicase.
pdb deposition date 2007-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11648 RIG-I_C-RD C-terminal domain of RIG-I
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.150.30 Mainly Beta Beta Complex Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A 2qfdA00
3NCUA 2W4RA 4A2XA 3ZD6A 4A2VA 4AY2A 3OG8A 5E3HA 3LRRA 2QFDA 2RMJA 2RQBA 3ZD7A 5F9FA 5F98A 4BPBA 2RQAA 3GA3A 3EQTA 2YKGA 3LRNA 2QFBA 5F9HA
chains in the Genus database with same CATH superfamily
2LOYA 3NCUA 2W4RA 4A2XA 3ZD6A 4CI3B 4A2VA 1TXJA 3E0MA 4AY2A 2K8DA 4TZUA 4CI2B 4V2YA 5E3HA 3LRRA 3OG8A 3CXKA 4V30A 3WX2A 2QFDA 2RMJA 1HXRA 2KV1A 2RQBA 3ZD7A 1H7YA 2LVLA 3HCJA 3CEZA 3HCIA 3FACA 5F9FA 2HR9A 5AMHA 4CI1B 5F98A 1L1DA 4BPBA 2RQAA 3GA3A 1YZ1A 3E0OA 2KWBA 3WX1A 3EQTA 2FU5A 3DJMA 3HCGA 4V31A 2KZNA 3HCHA 2YKGA 5F9HA 3MAOA 4TZ4C 3LRNA 4V2ZA 2QFBA 4TZCA 3EBMA 3P3KA 1FWQA 1H6QA
chains in the Genus database with same CATH topology
2LOYA 3NCUA 2W4RA 4A2XA 3ZD6A 4A2VA 1TXJA 4AY2A 3OG8A 5E3HA 3LRRA 2QFDA 2RMJA 1HXRA 2RQBA 3ZD7A 1H7YA 2LVLA 3FACA 5F9FA 2HR9A 5F98A 4BPBA 2RQAA 3GA3A 1YZ1A 2KWBA 3EQTA 2FU5A 3DJMA 2YKGA 5F9HA 3LRNA 2QFBA 3EBMA 3P3KA 1FWQA 1H6QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NCU A;  2W4R A;  4A2X A;  3ZD6 A;  4A2V A;  4AY2 A;  3OG8 A;  5E3H A;  3LRR A;  2QFD A;  2RMJ A;  2RQB A;  3ZD7 A;  5F9F A;  5F98 A;  4BPB A;  2RQA A;  3GA3 A;  3EQT A;  2YKG A;  3LRN A;  2QFB A;  5F9H A; 
#chains in the Genus database with same CATH topology
 2LOY A;  3NCU A;  2W4R A;  4A2X A;  3ZD6 A;  4CI3 B;  4A2V A;  1TXJ A;  3E0M A;  4AY2 A;  2K8D A;  4TZU A;  4CI2 B;  4V2Y A;  5E3H A;  3LRR A;  3OG8 A;  3CXK A;  4V30 A;  3WX2 A;  2QFD A;  2RMJ A;  1HXR A;  2KV1 A;  2RQB A;  3ZD7 A;  1H7Y A;  2LVL A;  3HCJ A;  3CEZ A;  3HCI A;  3FAC A;  5F9F A;  2HR9 A;  5AMH A;  4CI1 B;  5F98 A;  1L1D A;  4BPB A;  2RQA A;  3GA3 A;  1YZ1 A;  3E0O A;  2KWB A;  3WX1 A;  3EQT A;  2FU5 A;  3DJM A;  3HCG A;  4V31 A;  2KZN A;  3HCH A;  2YKG A;  5F9H A;  3MAO A;  4TZ4 C;  3LRN A;  4V2Z A;  2QFB A;  4TZC A;  3EBM A;  3P3K A;  1FWQ A;  1H6Q A; 
#chains in the Genus database with same CATH homology
 2LOY A;  3NCU A;  2W4R A;  4A2X A;  3ZD6 A;  4A2V A;  1TXJ A;  4AY2 A;  3OG8 A;  5E3H A;  3LRR A;  2QFD A;  2RMJ A;  1HXR A;  2RQB A;  3ZD7 A;  1H7Y A;  2LVL A;  3FAC A;  5F9F A;  2HR9 A;  5F98 A;  4BPB A;  2RQA A;  3GA3 A;  1YZ1 A;  2KWB A;  3EQT A;  2FU5 A;  3DJM A;  2YKG A;  5F9H A;  3LRN A;  2QFB A;  3EBM A;  3P3K A;  1FWQ A;  1H6Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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