2QFXA

Crystal structure of saccharomyces cerevesiae mitochondrial nadp(+)-dependent isocitrate dehydrogenase in complex with nadph, a-ketoglutarate and ca(2+)
Total Genus 133
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
133
sequence length
410
structure length
410
Chain Sequence
FSKIKVKQPVVELDGDEMTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQDAAEAIKKYGVGIKCATITPDEARVKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPRLVPRWEKPIIIGRHAHGDQYKATDTLIPGPGSLELVYKPSDPTTAQPQTLKVYDYKGSGVAMAMYNTDESIEGFAHSSFKLAIDKKLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEQLGIHYEHRLIDDMVAQMIKSKGGFIMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPDGKTFESEAAHGTVTRHYRKYQKGEETSTNSIASIFAWSRGLLKRGELDNTPALCKFANILESATLNTVQQDGIMTKDLALACGNNERSAYVTTEEFLDAVEKRLQKEIKS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Isocitrate dehydrogenase [NADP]
publication title Structural studies of Saccharomyces cerevesiae mitochondrial NADP-dependent isocitrate dehydrogenase in different enzymatic states reveal substantial conformational changes during the catalytic reaction
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 133
structure length 410
sequence length 410
chains with identical sequence B, C, D, E, F
ec nomenclature ec 1.1.1.42: Isocitrate dehydrogenase (NADP(+)).
pdb deposition date 2007-06-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00180 Iso_dh Isocitrate/isopropylmalate dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate Dehydrogenase 2qfxA00
3ICDA 1IDFA 4I3KA 1LWDA 5LGEA 1U7NA 1V94A 2E0CA 1IPDA 1ISOA 3TSNA 7ICDA 4AJ3A 3FMXX 5L58A 3R8WA 1T0LA 5HN5A 4AJAA 1GC8A 1GROA 4P69C 3U1HA 1VI1A 5L57A 4AJCA 5ICDA 1V53A 1ZORA 2D4VA 1X0LA 3VL2A 4WUOA 5GRLB 2DHTA 3AH3A 2Y3ZA 4Y1PA 3VMKA 1VLCA 1IDCA 3UDOA 1A05A 3LXYA 1CM7A 5HN6A 1R8KA 4BNPA 3US8A 4IWHA 2QFWA 1PTMA 8ICDA 1DR8A 2AYQA 4KZOA 1V5BA 3MASB 1PS6A 1G2UA 3WZWA 5GRLA 3LCBC 1HQSA 3TNGA 5J34A 5K11A 3VL4A 2E5MA 1CW7A 3VL3A 4XRXA 1IDEA 1IDDA 4F7IA 1PS7A 1WPWA 1PB3A 1DPZA 5GREA 2Y40A 4HCXA 5HN4A 3BLVA 5GRIA 3UF6A 5J33A 5HN3A 3VL6A 5J32A 1IKAA 2G4OA 1P8FA 1GRPA 5GREB 5GRIB 5K10A 3BLVB 3MASA 2IV0A 4AOYA 1XAAA 4UMXA 5GRFB 5GRHA 1AI2A 1AI3A 3VMLA 4ATYA 3VL7A 2UXRA 3WZVA 1GC9A 3BLXA 3ASJA 1TYOA 1W0DA 3MARA 3TY3A 1BL5A 4XS3A 4YB4A 4I3LA 5GRHB 1T09A 4JQPA 4AJSA 5I95A 1PB1A 1XKDA 3BLXB 4AOUA 3TY4A 3VKZA 3VMJA 5DE1A 1HEXA 2Y42A 3U9EA 4UMYA 1OSIA 3UDUA 1WALA 3INMA 4AOVA 4AJBA 4AJRA 4JA8A 1YXOA 1CW4A 1DR0A 5GRFA 6ICDA 3WZYA 2QFXA 1XACA 2UXQA 4L06A 3MAPA 5I96A 1SJSA 4XXVA 1OSJA 4L03A 3WZXA 1XGVA 2ZTWA 2QFVA 3DMSA 1XABA 4L04A 3FLKA 1HJ6A 1CW1A 2HI1A 2Y41A 9ICDA 4ICDA 1CNZA 1XADA 2QFYA 1YCOA 1IDMA 2D1CA
chains in the Genus database with same CATH superfamily
3ICDA 1IDFA 4I3KA 1LWDA 5LGEA 1U7NA 1V94A 2E0CA 1IPDA 1ISOA 3TSNA 7ICDA 4AJ3A 3FMXX 5L58A 3R8WA 1T0LA 5HN5A 4AJAA 1GC8A 1GROA 4P69C 3U1HA 1VI1A 5L57A 4AJCA 5ICDA 1V53A 1ZORA 2D4VA 1X0LA 3VL2A 4WUOA 5GRLB 2DHTA 3AH3A 2Y3ZA 4Y1PA 3VMKA 1VLCA 1IDCA 3UDOA 1A05A 3LXYA 1CM7A 5HN6A 1R8KA 4BNPA 3US8A 4IWHA 2QFWA 1PTMA 8ICDA 1DR8A 2AYQA 4KZOA 1V5BA 3MASB 1PS6A 1G2UA 3WZWA 5GRLA 3LCBC 1HQSA 3TNGA 5J34A 5K11A 3VL4A 2E5MA 1CW7A 3VL3A 4XRXA 1IDEA 1IDDA 4F7IA 1PS7A 1WPWA 1PB3A 1DPZA 5GREA 2Y40A 4HCXA 5HN4A 3BLVA 5GRIA 3UF6A 5J33A 5HN3A 3VL6A 5J32A 1IKAA 2G4OA 1P8FA 1GRPA 5GREB 5GRIB 5K10A 3BLVB 3MASA 2IV0A 4AOYA 1XAAA 4UMXA 5GRFB 5GRHA 1AI2A 1AI3A 3VMLA 4ATYA 3VL7A 2UXRA 3WZVA 1GC9A 3BLXA 3ASJA 1TYOA 1W0DA 3MARA 3TY3A 1BL5A 4XS3A 4YB4A 4I3LA 5GRHB 1T09A 4JQPA 4AJSA 5I95A 1PB1A 1XKDA 3BLXB 4AOUA 3TY4A 3VKZA 3VMJA 5DE1A 1HEXA 2Y42A 3U9EA 4UMYA 1OSIA 3UDUA 1WALA 3INMA 4AOVA 4AJBA 4AJRA 4JA8A 1YXOA 1CW4A 1DR0A 5GRFA 6ICDA 3WZYA 2QFXA 1XACA 2UXQA 4L06A 3MAPA 5I96A 1SJSA 4XXVA 1OSJA 4L03A 3WZXA 1XGVA 2ZTWA 2QFVA 3DMSA 1XABA 4L04A 3FLKA 1HJ6A 1CW1A 2HI1A 2Y41A 9ICDA 4ICDA 1CNZA 1XADA 2QFYA 1YCOA 1IDMA 2D1CA
chains in the Genus database with same CATH topology
3ICDA 1IDFA 4I3KA 1LWDA 5LGEA 1U7NA 1V94A 2E0CA 1IPDA 1ISOA 3TSNA 7ICDA 4AJ3A 3FMXX 5L58A 3R8WA 1T0LA 5HN5A 4AJAA 1GC8A 1GROA 4P69C 3U1HA 1VI1A 5L57A 4AJCA 5ICDA 1V53A 1ZORA 2D4VA 1X0LA 3VL2A 4WUOA 5GRLB 2DHTA 3AH3A 2Y3ZA 4Y1PA 3VMKA 1VLCA 1IDCA 3UDOA 1A05A 3LXYA 1CM7A 5HN6A 1R8KA 4BNPA 3US8A 4IWHA 2QFWA 1PTMA 8ICDA 1DR8A 2AYQA 4KZOA 1V5BA 3MASB 1PS6A 1G2UA 3WZWA 5GRLA 3LCBC 1HQSA 3TNGA 5J34A 5K11A 3VL4A 2E5MA 1CW7A 3VL3A 4XRXA 1IDEA 1IDDA 4F7IA 1PS7A 1WPWA 1PB3A 1DPZA 5GREA 2Y40A 4HCXA 5HN4A 3BLVA 5GRIA 3UF6A 5J33A 5HN3A 3VL6A 5J32A 1IKAA 2G4OA 1P8FA 1GRPA 5GREB 5GRIB 5K10A 3BLVB 3MASA 2IV0A 4AOYA 1XAAA 4UMXA 5GRFB 5GRHA 1AI2A 1AI3A 3VMLA 4ATYA 3VL7A 2UXRA 3WZVA 1GC9A 3BLXA 3ASJA 1TYOA 1W0DA 3MARA 3TY3A 1BL5A 4XS3A 4YB4A 4I3LA 5GRHB 1T09A 4JQPA 4AJSA 5I95A 1PB1A 1XKDA 3BLXB 4AOUA 3TY4A 3VKZA 3VMJA 5DE1A 1HEXA 2Y42A 3U9EA 4UMYA 1OSIA 3UDUA 1WALA 3INMA 4AOVA 4AJBA 4AJRA 4JA8A 1YXOA 1CW4A 1DR0A 5GRFA 6ICDA 3WZYA 2QFXA 1XACA 2UXQA 4L06A 3MAPA 5I96A 1SJSA 4XXVA 1OSJA 4L03A 3WZXA 1XGVA 2ZTWA 2QFVA 3DMSA 1XABA 4L04A 3FLKA 1HJ6A 1CW1A 2HI1A 2Y41A 9ICDA 4ICDA 1CNZA 1XADA 2QFYA 1YCOA 1IDMA 2D1CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ICD A;  1IDF A;  4I3K A;  1LWD A;  5LGE A;  1U7N A;  1V94 A;  2E0C A;  1IPD A;  1ISO A;  3TSN A;  7ICD A;  4AJ3 A;  3FMX X;  5L58 A;  3R8W A;  1T0L A;  5HN5 A;  4AJA A;  1GC8 A;  1GRO A;  4P69 C;  3U1H A;  1VI1 A;  5L57 A;  4AJC A;  5ICD A;  1V53 A;  1ZOR A;  2D4V A;  1X0L A;  3VL2 A;  4WUO A;  5GRL B;  2DHT A;  3AH3 A;  2Y3Z A;  4Y1P A;  3VMK A;  1VLC A;  1IDC A;  3UDO A;  1A05 A;  3LXY A;  1CM7 A;  5HN6 A;  1R8K A;  4BNP A;  3US8 A;  4IWH A;  2QFW A;  1PTM A;  8ICD A;  1DR8 A;  2AYQ A;  4KZO A;  1V5B A;  3MAS B;  1PS6 A;  1G2U A;  3WZW A;  5GRL A;  3LCB C;  1HQS A;  3TNG A;  5J34 A;  5K11 A;  3VL4 A;  2E5M A;  1CW7 A;  3VL3 A;  4XRX A;  1IDE A;  1IDD A;  4F7I A;  1PS7 A;  1WPW A;  1PB3 A;  1DPZ A;  5GRE A;  2Y40 A;  4HCX A;  5HN4 A;  3BLV A;  5GRI A;  3UF6 A;  5J33 A;  5HN3 A;  3VL6 A;  5J32 A;  1IKA A;  2G4O A;  1P8F A;  1GRP A;  5GRE B;  5GRI B;  5K10 A;  3BLV B;  3MAS A;  2IV0 A;  4AOY A;  1XAA A;  4UMX A;  5GRF B;  5GRH A;  1AI2 A;  1AI3 A;  3VML A;  4ATY A;  3VL7 A;  2UXR A;  3WZV A;  1GC9 A;  3BLX A;  3ASJ A;  1TYO A;  1W0D A;  3MAR A;  3TY3 A;  1BL5 A;  4XS3 A;  4YB4 A;  4I3L A;  5GRH B;  1T09 A;  4JQP A;  4AJS A;  5I95 A;  1PB1 A;  1XKD A;  3BLX B;  4AOU A;  3TY4 A;  3VKZ A;  3VMJ A;  5DE1 A;  1HEX A;  2Y42 A;  3U9E A;  4UMY A;  1OSI A;  3UDU A;  1WAL A;  3INM A;  4AOV A;  4AJB A;  4AJR A;  4JA8 A;  1YXO A;  1CW4 A;  1DR0 A;  5GRF A;  6ICD A;  3WZY A;  2QFX A;  1XAC A;  2UXQ A;  4L06 A;  3MAP A;  5I96 A;  1SJS A;  4XXV A;  1OSJ A;  4L03 A;  3WZX A;  1XGV A;  2ZTW A;  2QFV A;  3DMS A;  1XAB A;  4L04 A;  3FLK A;  1HJ6 A;  1CW1 A;  2HI1 A;  2Y41 A;  9ICD A;  4ICD A;  1CNZ A;  1XAD A;  2QFY A;  1YCO A;  1IDM A;  2D1C A; 
#chains in the Genus database with same CATH topology
 3ICD A;  1IDF A;  4I3K A;  1LWD A;  5LGE A;  1U7N A;  1V94 A;  2E0C A;  1IPD A;  1ISO A;  3TSN A;  7ICD A;  4AJ3 A;  3FMX X;  5L58 A;  3R8W A;  1T0L A;  5HN5 A;  4AJA A;  1GC8 A;  1GRO A;  4P69 C;  3U1H A;  1VI1 A;  5L57 A;  4AJC A;  5ICD A;  1V53 A;  1ZOR A;  2D4V A;  1X0L A;  3VL2 A;  4WUO A;  5GRL B;  2DHT A;  3AH3 A;  2Y3Z A;  4Y1P A;  3VMK A;  1VLC A;  1IDC A;  3UDO A;  1A05 A;  3LXY A;  1CM7 A;  5HN6 A;  1R8K A;  4BNP A;  3US8 A;  4IWH A;  2QFW A;  1PTM A;  8ICD A;  1DR8 A;  2AYQ A;  4KZO A;  1V5B A;  3MAS B;  1PS6 A;  1G2U A;  3WZW A;  5GRL A;  3LCB C;  1HQS A;  3TNG A;  5J34 A;  5K11 A;  3VL4 A;  2E5M A;  1CW7 A;  3VL3 A;  4XRX A;  1IDE A;  1IDD A;  4F7I A;  1PS7 A;  1WPW A;  1PB3 A;  1DPZ A;  5GRE A;  2Y40 A;  4HCX A;  5HN4 A;  3BLV A;  5GRI A;  3UF6 A;  5J33 A;  5HN3 A;  3VL6 A;  5J32 A;  1IKA A;  2G4O A;  1P8F A;  1GRP A;  5GRE B;  5GRI B;  5K10 A;  3BLV B;  3MAS A;  2IV0 A;  4AOY A;  1XAA A;  4UMX A;  5GRF B;  5GRH A;  1AI2 A;  1AI3 A;  3VML A;  4ATY A;  3VL7 A;  2UXR A;  3WZV A;  1GC9 A;  3BLX A;  3ASJ A;  1TYO A;  1W0D A;  3MAR A;  3TY3 A;  1BL5 A;  4XS3 A;  4YB4 A;  4I3L A;  5GRH B;  1T09 A;  4JQP A;  4AJS A;  5I95 A;  1PB1 A;  1XKD A;  3BLX B;  4AOU A;  3TY4 A;  3VKZ A;  3VMJ A;  5DE1 A;  1HEX A;  2Y42 A;  3U9E A;  4UMY A;  1OSI A;  3UDU A;  1WAL A;  3INM A;  4AOV A;  4AJB A;  4AJR A;  4JA8 A;  1YXO A;  1CW4 A;  1DR0 A;  5GRF A;  6ICD A;  3WZY A;  2QFX A;  1XAC A;  2UXQ A;  4L06 A;  3MAP A;  5I96 A;  1SJS A;  4XXV A;  1OSJ A;  4L03 A;  3WZX A;  1XGV A;  2ZTW A;  2QFV A;  3DMS A;  1XAB A;  4L04 A;  3FLK A;  1HJ6 A;  1CW1 A;  2HI1 A;  2Y41 A;  9ICD A;  4ICD A;  1CNZ A;  1XAD A;  2QFY A;  1YCO A;  1IDM A;  2D1C A; 
#chains in the Genus database with same CATH homology
 3ICD A;  1IDF A;  4I3K A;  1LWD A;  5LGE A;  1U7N A;  1V94 A;  2E0C A;  1IPD A;  1ISO A;  3TSN A;  7ICD A;  4AJ3 A;  3FMX X;  5L58 A;  3R8W A;  1T0L A;  5HN5 A;  4AJA A;  1GC8 A;  1GRO A;  4P69 C;  3U1H A;  1VI1 A;  5L57 A;  4AJC A;  5ICD A;  1V53 A;  1ZOR A;  2D4V A;  1X0L A;  3VL2 A;  4WUO A;  5GRL B;  2DHT A;  3AH3 A;  2Y3Z A;  4Y1P A;  3VMK A;  1VLC A;  1IDC A;  3UDO A;  1A05 A;  3LXY A;  1CM7 A;  5HN6 A;  1R8K A;  4BNP A;  3US8 A;  4IWH A;  2QFW A;  1PTM A;  8ICD A;  1DR8 A;  2AYQ A;  4KZO A;  1V5B A;  3MAS B;  1PS6 A;  1G2U A;  3WZW A;  5GRL A;  3LCB C;  1HQS A;  3TNG A;  5J34 A;  5K11 A;  3VL4 A;  2E5M A;  1CW7 A;  3VL3 A;  4XRX A;  1IDE A;  1IDD A;  4F7I A;  1PS7 A;  1WPW A;  1PB3 A;  1DPZ A;  5GRE A;  2Y40 A;  4HCX A;  5HN4 A;  3BLV A;  5GRI A;  3UF6 A;  5J33 A;  5HN3 A;  3VL6 A;  5J32 A;  1IKA A;  2G4O A;  1P8F A;  1GRP A;  5GRE B;  5GRI B;  5K10 A;  3BLV B;  3MAS A;  2IV0 A;  4AOY A;  1XAA A;  4UMX A;  5GRF B;  5GRH A;  1AI2 A;  1AI3 A;  3VML A;  4ATY A;  3VL7 A;  2UXR A;  3WZV A;  1GC9 A;  3BLX A;  3ASJ A;  1TYO A;  1W0D A;  3MAR A;  3TY3 A;  1BL5 A;  4XS3 A;  4YB4 A;  4I3L A;  5GRH B;  1T09 A;  4JQP A;  4AJS A;  5I95 A;  1PB1 A;  1XKD A;  3BLX B;  4AOU A;  3TY4 A;  3VKZ A;  3VMJ A;  5DE1 A;  1HEX A;  2Y42 A;  3U9E A;  4UMY A;  1OSI A;  3UDU A;  1WAL A;  3INM A;  4AOV A;  4AJB A;  4AJR A;  4JA8 A;  1YXO A;  1CW4 A;  1DR0 A;  5GRF A;  6ICD A;  3WZY A;  2QFX A;  1XAC A;  2UXQ A;  4L06 A;  3MAP A;  5I96 A;  1SJS A;  4XXV A;  1OSJ A;  4L03 A;  3WZX A;  1XGV A;  2ZTW A;  2QFV A;  3DMS A;  1XAB A;  4L04 A;  3FLK A;  1HJ6 A;  1CW1 A;  2HI1 A;  2Y41 A;  9ICD A;  4ICD A;  1CNZ A;  1XAD A;  2QFY A;  1YCO A;  1IDM A;  2D1C A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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