2QGAB

Plasmodium vivax adenylosuccinate lyase pv003765 with amp bound
Total Genus 181
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
181
sequence length
461
structure length
454
Chain Sequence
EHLKNISPIDGRYKKACGELSAFFSEHALIKHRIIVEVRWLLFLNEEELFFEKVTDHSVEVLNQIATNITDSDIARVKAIEEETNHDVKAVEYFVKEKLKNSKREDLLKIKEYVHYLCTSEDINNVAYATCLKACLNDVVIPCLEKIMLKLKDLAVEYSHVPLLSRTHGQPASSTTFGKEMANFYARIHHHVGVIRRVKVCAKFNGAVGNFNAHKVASKDTDWVNTIGLFLKKHFNLTYSIYCTQIQDHDYICELCDGLARANGTLIDLCVDIWLYISNNLLKLKSSTMPHKVNPIDFENAEGNLHIANAFFKLFSSKLPTSRLQRDLSDSTVLRNIGSSLAYCLIAYKSVLKGLNKIDIDRRNLEEELNQNWSTLAEPIQIVMKRHNYVDAYEELKQFTRGKVIDQKIMQEFIKTKCAFLPQDVVDQLLELTPATYTGYADYLAKNVERLSGE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Adenylosuccinate lyase
publication title Plasmodium vivax adenylosuccinate lyase Pv003765 with AMP bound
rcsb
source organism Plasmodium vivax
molecule tags Lyase
total genus 181
structure length 454
sequence length 461
chains with identical sequence C
ec nomenclature ec 4.3.2.2: Adenylosuccinate lyase.
pdb deposition date 2007-06-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00206 Lyase_1 Lyase
B PF08328 ASL_C Adenylosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 2qgaB03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 2qgaB01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2qgaB02
4FLCA 1AUWA 1FURA 1TJWA 2RJRA 2PTRA 4C6GA 3R6YA 1K7WA 5D6BA 2O7EA 3NO9A 1GKMA 1GK2A 3BHGA 2O6YA 2J91A 1TJVA 5F91A 4EEIA 1Q5NA 4V2RA 1C3UA 1HY0A 1FUPA 1T6JA 3E04A 3C8TA 2RJSA 1VDKA 4NSLA 2QVEA 1GK3A 2E9FA 1I0AA 2O7BA 2OHYA 2YIIA 4NLEA 2O78A 1Y2MA 4EFCA 1FUOA 2VD6A 2PTQA 2QGAB 3UNVA 3R6QA 3RD8A 1B8FA 3RRPA 1GKJA 2O7FA 1HY1A 5F92A 1JSWA 3R6VA 1EB4A 1YFEA 4C5UA 1XWOA 2PTSA 4C5RA 2FUSA 2X75A 1FUQA 4ADLA 1J3UA 4BAAA 1TJUA 3OCEA 2NYFA 1KQ7A 1TJ7A 3QBPA 1C3CA 4MX2A 1DCNA 4HGVA 3TV2A 1RE5A 2PFMA 2NYNA 4APAA 3CZOA 1YISA 4V2QA 1U15A 1W27A 4ADMA 5EYTA 4BABA 5EYVA 1YFMA 3KDZA 1U16A 3GTDA 2O7DA 4APBA 3OCFA 4FFXA 1K62A 3GZHA 3KDYA 2HVGA 3NZ4A 1T6PA 4CQ5A 1DOFA 4C5SA 5HW2A
chains in the Genus database with same CATH superfamily
4FLCA 1AUWA 1FURA 1TJWA 1Q92A 2RJRA 2PTRA 4C6GA 1Z4IA 3BWVA 3R6YA 4L57A 2YV5A 4YIHA 2FENA 1K7WA 4E88A 5D6BA 2O7EA 3NO9A 1GKMA 1GK2A 2JARA 2D28C 3BHGA 2O6YA 2J91A 1TJVA 5F91A 3CI0K 4EEIA 1Q5NA 4V2RA 1C3UA 2VSFA 2VL7A 3F4TA 3U19A 1HY0A 1FUPA 3CRW1 1T6JA 1IW7D 3E04A 2JAOA 3C8TA 2RJSA 1VDKA 4NSLA 2QVEA 2I7DA 1GK3A 2E9FA 1I0AA 2O7BA 4MWOA 2OHYA 2YIIA 1Z4LA 4NLEA 5M0JA 2O78A 1Z4MA 1Y2MA 4EFCA 1XMCA 1FUOA 2VD6A 1T9HA 2PTQA 2QGAB 3UNVA 3R6QA 3RD8A 1B8FA 3RRPA 1GKJA 2FELA 2O7FA 4IQJM 1HY1A 1XL7A 3F4RA 4L6AA 5F92A 4A15A 2JAUA 1JSWA 3R6VA 1EB4A 1YFEA 4C5UA 1XWOA 2PTSA 1Q91A 1Z4KA 1XMDA 4C5RA 2FUSA 2X75A 1FUQA 1XL8A 4ADLA 1J3UA 1Z4JA 4BAAA 1Z4QA 2JAWA 3U13A 1TJUA 3OCEA 2NYFA 1KQ7A 1TJ7A 3CRVA 3QBPA 1C3CA 4MX2A 1DCNA 4HGVA 4YIKA 3TV2A 1RE5A 1XLYA 2PFMA 2NYNA 4APAA 3CZOA 5H8WA 1YISA 1MH9A 4V2QA 4NFLA 1U15A 1W27A 4WNLA 2D27A 4ADMA 5EYTA 4BABA 5EYVA 1U0LA 1YFMA 3KDZA 1U16A 3GTDA 2RCNA 2O7DA 4APBA 3OCFA 4FFXA 1K62A 3GZHA 3KDYA 2HVGA 3NZ4A 5M0IA 1T6PA 4CQ5A 1DOFA 4C5SA 5HW2A 1Z4PX 4L6CA 4MUMA 3F4SA
chains in the Genus database with same CATH topology
4FLCA 1AUWA 1FURA 1TJWA 2RJRA 2PTRA 4C6GA 3R6YA 1K7WA 5D6BA 2O7EA 3NO9A 1GKMA 1GK2A 3BHGA 2O6YA 2J91A 1TJVA 5F91A 4EEIA 1Q5NA 4V2RA 1C3UA 1HY0A 1FUPA 1T6JA 3E04A 3C8TA 2RJSA 1VDKA 4NSLA 2QVEA 1GK3A 2E9FA 1I0AA 2O7BA 2OHYA 2YIIA 4NLEA 2O78A 1Y2MA 4EFCA 1FUOA 2VD6A 2PTQA 2QGAB 3UNVA 3R6QA 3RD8A 1B8FA 3RRPA 1GKJA 2O7FA 1HY1A 5F92A 1JSWA 3R6VA 1EB4A 1YFEA 4C5UA 1XWOA 2PTSA 4C5RA 2FUSA 2X75A 1FUQA 4ADLA 1J3UA 4BAAA 1TJUA 3OCEA 2NYFA 1KQ7A 1TJ7A 3QBPA 1C3CA 4MX2A 1DCNA 4HGVA 3TV2A 1RE5A 2PFMA 2NYNA 4APAA 3CZOA 1YISA 4V2QA 1U15A 1W27A 4ADMA 5EYTA 4BABA 5EYVA 1YFMA 3KDZA 1U16A 3GTDA 2O7DA 4APBA 3OCFA 4FFXA 1K62A 3GZHA 3KDYA 2HVGA 3NZ4A 1T6PA 4CQ5A 1DOFA 4C5SA 5HW2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FLC A;  1AUW A;  1FUR A;  1TJW A;  2RJR A;  2PTR A;  4C6G A;  3R6Y A;  1K7W A;  5D6B A;  2O7E A;  3NO9 A;  1GKM A;  1GK2 A;  3BHG A;  2O6Y A;  2J91 A;  1TJV A;  5F91 A;  4EEI A;  1Q5N A;  4V2R A;  1C3U A;  1HY0 A;  1FUP A;  1T6J A;  3E04 A;  3C8T A;  2RJS A;  1VDK A;  4NSL A;  2QVE A;  1GK3 A;  2E9F A;  1I0A A;  2O7B A;  2OHY A;  2YII A;  4NLE A;  2O78 A;  1Y2M A;  4EFC A;  1FUO A;  2VD6 A;  2PTQ A;  2QGA B;  3UNV A;  3R6Q A;  3RD8 A;  1B8F A;  3RRP A;  1GKJ A;  2O7F A;  1HY1 A;  5F92 A;  1JSW A;  3R6V A;  1EB4 A;  1YFE A;  4C5U A;  1XWO A;  2PTS A;  4C5R A;  2FUS A;  2X75 A;  1FUQ A;  4ADL A;  1J3U A;  4BAA A;  1TJU A;  3OCE A;  2NYF A;  1KQ7 A;  1TJ7 A;  3QBP A;  1C3C A;  4MX2 A;  1DCN A;  4HGV A;  3TV2 A;  1RE5 A;  2PFM A;  2NYN A;  4APA A;  3CZO A;  1YIS A;  4V2Q A;  1U15 A;  1W27 A;  4ADM A;  5EYT A;  4BAB A;  5EYV A;  1YFM A;  3KDZ A;  1U16 A;  3GTD A;  2O7D A;  4APB A;  3OCF A;  4FFX A;  1K62 A;  3GZH A;  3KDY A;  2HVG A;  3NZ4 A;  1T6P A;  4CQ5 A;  1DOF A;  4C5S A;  5HW2 A; 
#chains in the Genus database with same CATH topology
 4FLC A;  1AUW A;  1FUR A;  1TJW A;  1Q92 A;  2RJR A;  2PTR A;  4C6G A;  1Z4I A;  3BWV A;  3R6Y A;  4L57 A;  2YV5 A;  4YIH A;  2FEN A;  1K7W A;  4E88 A;  5D6B A;  2O7E A;  3NO9 A;  1GKM A;  1GK2 A;  2JAR A;  2D28 C;  3BHG A;  2O6Y A;  2J91 A;  1TJV A;  5F91 A;  3CI0 K;  4EEI A;  1Q5N A;  4V2R A;  1C3U A;  2VSF A;  2VL7 A;  3F4T A;  3U19 A;  1HY0 A;  1FUP A;  3CRW 1;  1T6J A;  1IW7 D;  3E04 A;  2JAO A;  3C8T A;  2RJS A;  1VDK A;  4NSL A;  2QVE A;  2I7D A;  1GK3 A;  2E9F A;  1I0A A;  2O7B A;  4MWO A;  2OHY A;  2YII A;  1Z4L A;  4NLE A;  5M0J A;  2O78 A;  1Z4M A;  1Y2M A;  4EFC A;  1XMC A;  1FUO A;  2VD6 A;  1T9H A;  2PTQ A;  2QGA B;  3UNV A;  3R6Q A;  3RD8 A;  1B8F A;  3RRP A;  1GKJ A;  2FEL A;  2O7F A;  4IQJ M;  1HY1 A;  1XL7 A;  3F4R A;  4L6A A;  5F92 A;  4A15 A;  2JAU A;  1JSW A;  3R6V A;  1EB4 A;  1YFE A;  4C5U A;  1XWO A;  2PTS A;  1Q91 A;  1Z4K A;  1XMD A;  4C5R A;  2FUS A;  2X75 A;  1FUQ A;  1XL8 A;  4ADL A;  1J3U A;  1Z4J A;  4BAA A;  1Z4Q A;  2JAW A;  3U13 A;  1TJU A;  3OCE A;  2NYF A;  1KQ7 A;  1TJ7 A;  3CRV A;  3QBP A;  1C3C A;  4MX2 A;  1DCN A;  4HGV A;  4YIK A;  3TV2 A;  1RE5 A;  1XLY A;  2PFM A;  2NYN A;  4APA A;  3CZO A;  5H8W A;  1YIS A;  1MH9 A;  4V2Q A;  4NFL A;  1U15 A;  1W27 A;  4WNL A;  2D27 A;  4ADM A;  5EYT A;  4BAB A;  5EYV A;  1U0L A;  1YFM A;  3KDZ A;  1U16 A;  3GTD A;  2RCN A;  2O7D A;  4APB A;  3OCF A;  4FFX A;  1K62 A;  3GZH A;  3KDY A;  2HVG A;  3NZ4 A;  5M0I A;  1T6P A;  4CQ5 A;  1DOF A;  4C5S A;  5HW2 A;  1Z4P X;  4L6C A;  4MUM A;  3F4S A; 
#chains in the Genus database with same CATH homology
 4FLC A;  1AUW A;  1FUR A;  1TJW A;  2RJR A;  2PTR A;  4C6G A;  3R6Y A;  1K7W A;  5D6B A;  2O7E A;  3NO9 A;  1GKM A;  1GK2 A;  3BHG A;  2O6Y A;  2J91 A;  1TJV A;  5F91 A;  4EEI A;  1Q5N A;  4V2R A;  1C3U A;  1HY0 A;  1FUP A;  1T6J A;  3E04 A;  3C8T A;  2RJS A;  1VDK A;  4NSL A;  2QVE A;  1GK3 A;  2E9F A;  1I0A A;  2O7B A;  2OHY A;  2YII A;  4NLE A;  2O78 A;  1Y2M A;  4EFC A;  1FUO A;  2VD6 A;  2PTQ A;  2QGA B;  3UNV A;  3R6Q A;  3RD8 A;  1B8F A;  3RRP A;  1GKJ A;  2O7F A;  1HY1 A;  5F92 A;  1JSW A;  3R6V A;  1EB4 A;  1YFE A;  4C5U A;  1XWO A;  2PTS A;  4C5R A;  2FUS A;  2X75 A;  1FUQ A;  4ADL A;  1J3U A;  4BAA A;  1TJU A;  3OCE A;  2NYF A;  1KQ7 A;  1TJ7 A;  3QBP A;  1C3C A;  4MX2 A;  1DCN A;  4HGV A;  3TV2 A;  1RE5 A;  2PFM A;  2NYN A;  4APA A;  3CZO A;  1YIS A;  4V2Q A;  1U15 A;  1W27 A;  4ADM A;  5EYT A;  4BAB A;  5EYV A;  1YFM A;  3KDZ A;  1U16 A;  3GTD A;  2O7D A;  4APB A;  3OCF A;  4FFX A;  1K62 A;  3GZH A;  3KDY A;  2HVG A;  3NZ4 A;  1T6P A;  4CQ5 A;  1DOF A;  4C5S A;  5HW2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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