2QGAB

Plasmodium vivax adenylosuccinate lyase pv003765 with amp bound
Total Genus 181
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
181
sequence length
461
structure length
454
Chain Sequence
EHLKNISPIDGRYKKACGELSAFFSEHALIKHRIIVEVRWLLFLNEEELFFEKVTDHSVEVLNQIATNITDSDIARVKAIEEETNHDVKAVEYFVKEKLKNSKREDLLKIKEYVHYLCTSEDINNVAYATCLKACLNDVVIPCLEKIMLKLKDLAVEYSHVPLLSRTHGQPASSTTFGKEMANFYARIHHHVGVIRRVKVCAKFNGAVGNFNAHKVASKDTDWVNTIGLFLKKHFNLTYSIYCTQIQDHDYICELCDGLARANGTLIDLCVDIWLYISNNLLKLKSSTMPHKVNPIDFENAEGNLHIANAFFKLFSSKLPTSRLQRDLSDSTVLRNIGSSLAYCLIAYKSVLKGLNKIDIDRRNLEEELNQNWSTLAEPIQIVMKRHNYVDAYEELKQFTRGKVIDQKIMQEFIKTKCAFLPQDVVDQLLELTPATYTGYADYLAKNVERLSGE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords Adenylosuccinate lyase
publication title Plasmodium vivax adenylosuccinate lyase Pv003765 with AMP bound
rcsb
source organism Plasmodium vivax
total genus 181
structure length 454
sequence length 461
chains with identical sequence C
ec nomenclature ec 4.3.2.2: Adenylosuccinate lyase.
pdb deposition date 2007-06-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00206 Lyase_1 Lyase
B PF08328 ASL_C Adenylosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 2qgaB03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 2qgaB01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2qgaB02
1C3UA 1GK3A 4C6GA 4EEIA 2NYFA 4V2RA 4APAA 3OCFA 1TJVA 1YFEA 5HW2A 5F91A 4BABA 1YISA 1K62A 1U15A 1RE5A 3C8TA 1Y2MA 1B8FA 3UNVA 4NLEA 2J91A 3KDZA 1GKJA 1DOFA 1TJWA 1FUOA 2FUSA 2PFMA 2PTSA 2O7EA 2RJRA 3R6QA 1T6PA 2O7FA 3R6YA 2PTQA 2PTRA 1FUPA 2X75A 3RRPA 1I0AA 1JSWA 1GKMA 1FUQA 1Q5NA 1VDKA 1C3CA 2RJSA 2YIIA 4MX2A 1HY0A 3TV2A 4APBA 3RD8A 1FURA 2O7BA 1YFMA 1TJUA 1EB4A 1HY1A 4C5SA 3E04A 4ADLA 3BHGA 1T6JA 3NO9A 3GTDA 4NSLA 3CZOA 4FFXA 3OCEA 2O7DA 4ADMA 2NYNA 3QBPA 2OHYA 1J3UA 2O78A 5D6BA 3R6VA 1DCNA 4C5RA 4C5UA 5EYVA 4BAAA 4CQ5A 3KDYA 1W27A 1XWOA 3GZHA 1U16A 1AUWA 2QGAB 1TJ7A 4V2QA 2E9FA 5F92A 4FLCA 2O6YA 1KQ7A 5EYTA 3NZ4A 2HVGA 4HGVA 1K7WA 2VD6A 1GK2A 4EFCA 2QVEA
chains in the Genus database with same CATH superfamily
4MWOA 1C3UA 1Q91A 1GK3A 4C6GA 2D27A 4NFLA 2JAWA 4EEIA 1IW7D 2JAOA 2NYFA 4V2RA 5M0JA 1MH9A 4APAA 3OCFA 1TJVA 4MUMA 2VL7A 1YFEA 5HW2A 1XLYA 5F91A 3U13A 4BABA 1YISA 1K62A 1U15A 1XL7A 1Z4MA 2YV5A 1RE5A 3C8TA 1Y2MA 1B8FA 3UNVA 4NLEA 1XMDA 1Z4LA 5H8WA 2J91A 3KDZA 4WNLA 1GKJA 1DOFA 1TJWA 2JAUA 1FUOA 2FUSA 2PFMA 2FELA 2PTSA 2I7DA 2O7EA 1XL8A 2RJRA 3R6QA 1T6PA 2O7FA 3R6YA 2PTQA 2PTRA 1FUPA 2X75A 3CRW1 3RRPA 1I0AA 1JSWA 1GKMA 1T9HA 1FUQA 1Q5NA 1XMCA 3U19A 1VDKA 1C3CA 2RJSA 2YIIA 4MX2A 1HY0A 3TV2A 4APBA 1Z4PX 1FURA 3RD8A 2O7BA 4L6AA 1YFMA 1Z4IA 1TJUA 4YIKA 1HY1A 1EB4A 4C5SA 4YIHA 3E04A 4ADLA 3BHGA 3BWVA 1T6JA 2D28C 3GTDA 3NO9A 4NSLA 3CZOA 4FFXA 1U0LA 3OCEA 2RCNA 2O7DA 3F4TA 4ADMA 2NYNA 3QBPA 2OHYA 1J3UA 2O78A 5D6BA 3CI0K 3R6VA 3F4RA 1DCNA 2JARA 4C5RA 4L6CA 4C5UA 1Q92A 1Z4QA 5EYVA 4BAAA 4CQ5A 3KDYA 1Z4JA 5M0IA 1Z4KA 1W27A 3CRVA 1XWOA 4L57A 3GZHA 1U16A 1AUWA 2QGAB 2VSFA 1TJ7A 4V2QA 2E9FA 2FENA 5F92A 4FLCA 2O6YA 1KQ7A 4IQJM 5EYTA 4E88A 3NZ4A 2HVGA 4HGVA 1K7WA 4A15A 2VD6A 1GK2A 4EFCA 2QVEA 3F4SA
chains in the Genus database with same CATH topology
1C3UA 1GK3A 4C6GA 4EEIA 2NYFA 4V2RA 4APAA 3OCFA 1TJVA 1YFEA 5HW2A 5F91A 4BABA 1YISA 1K62A 1U15A 1RE5A 3C8TA 1Y2MA 1B8FA 3UNVA 4NLEA 2J91A 3KDZA 1GKJA 1DOFA 1TJWA 1FUOA 2FUSA 2PFMA 2PTSA 2O7EA 2RJRA 3R6QA 1T6PA 2O7FA 3R6YA 2PTQA 2PTRA 1FUPA 2X75A 3RRPA 1I0AA 1JSWA 1GKMA 1FUQA 1Q5NA 1VDKA 1C3CA 2RJSA 2YIIA 4MX2A 1HY0A 3TV2A 4APBA 3RD8A 1FURA 2O7BA 1YFMA 1TJUA 1EB4A 1HY1A 4C5SA 3E04A 4ADLA 3BHGA 1T6JA 3NO9A 3GTDA 4NSLA 3CZOA 4FFXA 3OCEA 2O7DA 4ADMA 2NYNA 3QBPA 2OHYA 1J3UA 2O78A 5D6BA 3R6VA 1DCNA 4C5RA 4C5UA 5EYVA 4BAAA 4CQ5A 3KDYA 1W27A 1XWOA 3GZHA 1U16A 1AUWA 2QGAB 1TJ7A 4V2QA 2E9FA 5F92A 4FLCA 2O6YA 1KQ7A 5EYTA 3NZ4A 2HVGA 4HGVA 1K7WA 2VD6A 1GK2A 4EFCA 2QVEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1C3U A;  1GK3 A;  4C6G A;  4EEI A;  2NYF A;  4V2R A;  4APA A;  3OCF A;  1TJV A;  1YFE A;  5HW2 A;  5F91 A;  4BAB A;  1YIS A;  1K62 A;  1U15 A;  1RE5 A;  3C8T A;  1Y2M A;  1B8F A;  3UNV A;  4NLE A;  2J91 A;  3KDZ A;  1GKJ A;  1DOF A;  1TJW A;  1FUO A;  2FUS A;  2PFM A;  2PTS A;  2O7E A;  2RJR A;  3R6Q A;  1T6P A;  2O7F A;  3R6Y A;  2PTQ A;  2PTR A;  1FUP A;  2X75 A;  3RRP A;  1I0A A;  1JSW A;  1GKM A;  1FUQ A;  1Q5N A;  1VDK A;  1C3C A;  2RJS A;  2YII A;  4MX2 A;  1HY0 A;  3TV2 A;  4APB A;  3RD8 A;  1FUR A;  2O7B A;  1YFM A;  1TJU A;  1EB4 A;  1HY1 A;  4C5S A;  3E04 A;  4ADL A;  3BHG A;  1T6J A;  3NO9 A;  3GTD A;  4NSL A;  3CZO A;  4FFX A;  3OCE A;  2O7D A;  4ADM A;  2NYN A;  3QBP A;  2OHY A;  1J3U A;  2O78 A;  5D6B A;  3R6V A;  1DCN A;  4C5R A;  4C5U A;  5EYV A;  4BAA A;  4CQ5 A;  3KDY A;  1W27 A;  1XWO A;  3GZH A;  1U16 A;  1AUW A;  2QGA B;  1TJ7 A;  4V2Q A;  2E9F A;  5F92 A;  4FLC A;  2O6Y A;  1KQ7 A;  5EYT A;  3NZ4 A;  2HVG A;  4HGV A;  1K7W A;  2VD6 A;  1GK2 A;  4EFC A;  2QVE A; 
#chains in the Genus database with same CATH topology
 4MWO A;  1C3U A;  1Q91 A;  1GK3 A;  4C6G A;  2D27 A;  4NFL A;  2JAW A;  4EEI A;  1IW7 D;  2JAO A;  2NYF A;  4V2R A;  5M0J A;  1MH9 A;  4APA A;  3OCF A;  1TJV A;  4MUM A;  2VL7 A;  1YFE A;  5HW2 A;  1XLY A;  5F91 A;  3U13 A;  4BAB A;  1YIS A;  1K62 A;  1U15 A;  1XL7 A;  1Z4M A;  2YV5 A;  1RE5 A;  3C8T A;  1Y2M A;  1B8F A;  3UNV A;  4NLE A;  1XMD A;  1Z4L A;  5H8W A;  2J91 A;  3KDZ A;  4WNL A;  1GKJ A;  1DOF A;  1TJW A;  2JAU A;  1FUO A;  2FUS A;  2PFM A;  2FEL A;  2PTS A;  2I7D A;  2O7E A;  1XL8 A;  2RJR A;  3R6Q A;  1T6P A;  2O7F A;  3R6Y A;  2PTQ A;  2PTR A;  1FUP A;  2X75 A;  3CRW 1;  3RRP A;  1I0A A;  1JSW A;  1GKM A;  1T9H A;  1FUQ A;  1Q5N A;  1XMC A;  3U19 A;  1VDK A;  1C3C A;  2RJS A;  2YII A;  4MX2 A;  1HY0 A;  3TV2 A;  4APB A;  1Z4P X;  1FUR A;  3RD8 A;  2O7B A;  4L6A A;  1YFM A;  1Z4I A;  1TJU A;  4YIK A;  1HY1 A;  1EB4 A;  4C5S A;  4YIH A;  3E04 A;  4ADL A;  3BHG A;  3BWV A;  1T6J A;  2D28 C;  3GTD A;  3NO9 A;  4NSL A;  3CZO A;  4FFX A;  1U0L A;  3OCE A;  2RCN A;  2O7D A;  3F4T A;  4ADM A;  2NYN A;  3QBP A;  2OHY A;  1J3U A;  2O78 A;  5D6B A;  3CI0 K;  3R6V A;  3F4R A;  1DCN A;  2JAR A;  4C5R A;  4L6C A;  4C5U A;  1Q92 A;  1Z4Q A;  5EYV A;  4BAA A;  4CQ5 A;  3KDY A;  1Z4J A;  5M0I A;  1Z4K A;  1W27 A;  3CRV A;  1XWO A;  4L57 A;  3GZH A;  1U16 A;  1AUW A;  2QGA B;  2VSF A;  1TJ7 A;  4V2Q A;  2E9F A;  2FEN A;  5F92 A;  4FLC A;  2O6Y A;  1KQ7 A;  4IQJ M;  5EYT A;  4E88 A;  3NZ4 A;  2HVG A;  4HGV A;  1K7W A;  4A15 A;  2VD6 A;  1GK2 A;  4EFC A;  2QVE A;  3F4S A; 
#chains in the Genus database with same CATH homology
 1C3U A;  1GK3 A;  4C6G A;  4EEI A;  2NYF A;  4V2R A;  4APA A;  3OCF A;  1TJV A;  1YFE A;  5HW2 A;  5F91 A;  4BAB A;  1YIS A;  1K62 A;  1U15 A;  1RE5 A;  3C8T A;  1Y2M A;  1B8F A;  3UNV A;  4NLE A;  2J91 A;  3KDZ A;  1GKJ A;  1DOF A;  1TJW A;  1FUO A;  2FUS A;  2PFM A;  2PTS A;  2O7E A;  2RJR A;  3R6Q A;  1T6P A;  2O7F A;  3R6Y A;  2PTQ A;  2PTR A;  1FUP A;  2X75 A;  3RRP A;  1I0A A;  1JSW A;  1GKM A;  1FUQ A;  1Q5N A;  1VDK A;  1C3C A;  2RJS A;  2YII A;  4MX2 A;  1HY0 A;  3TV2 A;  4APB A;  3RD8 A;  1FUR A;  2O7B A;  1YFM A;  1TJU A;  1EB4 A;  1HY1 A;  4C5S A;  3E04 A;  4ADL A;  3BHG A;  1T6J A;  3NO9 A;  3GTD A;  4NSL A;  3CZO A;  4FFX A;  3OCE A;  2O7D A;  4ADM A;  2NYN A;  3QBP A;  2OHY A;  1J3U A;  2O78 A;  5D6B A;  3R6V A;  1DCN A;  4C5R A;  4C5U A;  5EYV A;  4BAA A;  4CQ5 A;  3KDY A;  1W27 A;  1XWO A;  3GZH A;  1U16 A;  1AUW A;  2QGA B;  1TJ7 A;  4V2Q A;  2E9F A;  5F92 A;  4FLC A;  2O6Y A;  1KQ7 A;  5EYT A;  3NZ4 A;  2HVG A;  4HGV A;  1K7W A;  2VD6 A;  1GK2 A;  4EFC A;  2QVE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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