2QGAB

Plasmodium vivax adenylosuccinate lyase pv003765 with amp bound
Total Genus 181
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
181
sequence length
461
structure length
454
Chain Sequence
b'EHLKNISPIDGRYKKACGELSAFFSEHALIKHRIIVEVRWLLFLNEEELFFEKVTDHSVEVLNQIATNITDSDIARVKAIEEETNHDVKAVEYFVKEKLKNSKREDLLKIKEYVHYLCTSEDINNVAYATCLKACLNDVVIPCLEKIMLKLKDLAVEYSHVPLLSRTHGQPASSTTFGKEMANFYARIHHHVGVIRRVKVCAKFNGAVGNFNAHKVASKDTDWVNTIGLFLKKHFNLTYSIYCTQIQDHDYICELCDGLARANGTLIDLCVDIWLYISNNLLKLKSSTMPHKVNPIDFENAEGNLHIANAFFKLFSSKLPTSRLQRDLSDSTVLRNIGSSLAYCLIAYKSVLKGLNKIDIDRRNLEEELNQNWSTLAEPIQIVMKRHNYVDAYEELKQFTRGKVIDQKIMQEFIKTKCAFLPQDVVDQLLELTPATYTGYADYLAKNVERLSGE'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Plasmodium vivax adenylosuccinate lyase Pv003765 with AMP bound
rcsb
molecule keywords Adenylosuccinate lyase
source organism Plasmodium vivax
molecule tags Lyase
total genus 181
structure length 454
sequence length 461
chains with identical sequence C
ec nomenclature ec 4.3.2.2: Adenylosuccinate lyase.
pdb deposition date 2007-06-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00206 Lyase_1 Lyase
B PF08328 ASL_C Adenylosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 2qgaB03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 2qgaB01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2qgaB02
4C6GA 3TV2A 5F92A 4HGVA 1C3UA 1TJVA 2E9FA 1TJUA 2NYNA 1KQ7A 1FUOA 1DCNA 2FUSA 2X75A 3GTDA 4V2RA 2PFMA 4MX2A 4FLCA 2PTSA 3KDYA 2QVEA 1T6PA 4BAAA 1B8FA 2O7DA 2QGAB 1GKJA 4ADLA 1TJWA 1GK2A 4EFCA 4NLEA 1AUWA 1YISA 3R6YA 1RE5A 4FFXA 3NZ4A 1FURA 4NSLA 4C5SA 4CQ5A 3UNVA 1GKMA 5EYVA 1YFMA 1EB4A 1FUQA 2RJRA 1C3CA 4APAA 4BABA 1U16A 3GZHA 1Q5NA 2VD6A 5D6BA 3NO9A 2RJSA 1GK3A 3CZOA 2O6YA 2PTQA 3OCEA 5EYTA 2OHYA 3E04A 3KDZA 1K7WA 1J3UA 1I0AA 2PTRA 2O7FA 3C8TA 2HVGA 4APBA 3R6QA 1VDKA 4C5UA 3OCFA 3QBPA 1T6JA 3R6VA 1YFEA 1XWOA 4EEIA 1TJ7A 2J91A 2YIIA 3RD8A 1U15A 1JSWA 4C5RA 5HW2A 1DOFA 4V2QA 1HY1A 5F91A 2O7BA 3RRPA 4ADMA 3BHGA 2O78A 2NYFA 2O7EA 1HY0A 1W27A 1Y2MA 1FUPA 1K62A
chains in the Genus database with same CATH superfamily
4C6GA 3TV2A 5F92A 1Z4MA 4HGVA 1C3UA 1TJVA 2E9FA 2VSFA 4YIKA 1TJUA 2NYNA 2JAWA 1KQ7A 1FUOA 1DCNA 2FUSA 2X75A 1XMDA 3GTDA 4V2RA 5M0IA 2PFMA 1U0LA 4MX2A 4YIHA 4FLCA 2PTSA 3KDYA 1XLYA 2QVEA 1T6PA 4BAAA 1B8FA 2D27A 2QGAB 1Z4PX 1Z4KA 3BWVA 1GKJA 1XMCA 2O7DA 4ADLA 1TJWA 1GK2A 1Q92A 4EFCA 5M0JA 4NLEA 1AUWA 1XL7A 1Z4QA 1YISA 3R6YA 1RE5A 4FFXA 3NZ4A 4L6AA 1FURA 4NSLA 4C5SA 1MH9A 4CQ5A 1T9HA 3UNVA 1GKMA 5EYVA 2JAOA 2FELA 1YFMA 1EB4A 1FUQA 2RJRA 1C3CA 4L6CA 4APAA 4BABA 1U16A 3GZHA 3U19A 1Q5NA 3F4SA 3CRW1 1IW7D 1Z4LA 5D6BA 2VD6A 3NO9A 2RJSA 1GK3A 3U13A 3CZOA 2O6YA 2PTQA 3OCEA 5EYTA 2OHYA 3E04A 2D28C 3KDZA 1K7WA 2I7DA 3CI0K 1J3UA 2VL7A 1Q91A 1I0AA 2PTRA 2O7FA 3C8TA 2HVGA 4MWOA 4APBA 3R6QA 1XL8A 4L57A 1VDKA 4C5UA 3OCFA 3QBPA 1Z4IA 1Z4JA 3R6VA 1YFEA 1T6JA 4A15A 1XWOA 3CRVA 4EEIA 1TJ7A 2J91A 2YIIA 3RD8A 1U15A 1JSWA 4C5RA 5HW2A 4NFLA 1DOFA 2RCNA 4V2QA 1HY1A 5F91A 2JAUA 2JARA 2YV5A 2O7BA 5H8WA 3RRPA 3F4RA 4ADMA 3BHGA 2O78A 3F4TA 2NYFA 2O7EA 1HY0A 1W27A 1Y2MA 4IQJM 4E88A 1FUPA 4WNLA 4MUMA 2FENA 1K62A
chains in the Genus database with same CATH topology
4C6GA 3TV2A 5F92A 4HGVA 1C3UA 1TJVA 2E9FA 1TJUA 2NYNA 1KQ7A 1FUOA 1DCNA 2FUSA 2X75A 3GTDA 4V2RA 2PFMA 4MX2A 4FLCA 2PTSA 3KDYA 2QVEA 1T6PA 4BAAA 1B8FA 2O7DA 2QGAB 1GKJA 4ADLA 1TJWA 1GK2A 4EFCA 4NLEA 1AUWA 1YISA 3R6YA 1RE5A 4FFXA 3NZ4A 1FURA 4NSLA 4C5SA 4CQ5A 3UNVA 1GKMA 5EYVA 1YFMA 1EB4A 1FUQA 2RJRA 1C3CA 4APAA 4BABA 1U16A 3GZHA 1Q5NA 2VD6A 5D6BA 3NO9A 2RJSA 1GK3A 3CZOA 2O6YA 2PTQA 3OCEA 5EYTA 2OHYA 3E04A 3KDZA 1K7WA 1J3UA 1I0AA 2PTRA 2O7FA 3C8TA 2HVGA 4APBA 3R6QA 1VDKA 4C5UA 3OCFA 3QBPA 1T6JA 3R6VA 1YFEA 1XWOA 4EEIA 1TJ7A 2J91A 2YIIA 3RD8A 1U15A 1JSWA 4C5RA 5HW2A 1DOFA 4V2QA 1HY1A 5F91A 2O7BA 3RRPA 4ADMA 3BHGA 2O78A 2NYFA 2O7EA 1HY0A 1W27A 1Y2MA 1FUPA 1K62A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4C6G A;  3TV2 A;  5F92 A;  4HGV A;  1C3U A;  1TJV A;  2E9F A;  1TJU A;  2NYN A;  1KQ7 A;  1FUO A;  1DCN A;  2FUS A;  2X75 A;  3GTD A;  4V2R A;  2PFM A;  4MX2 A;  4FLC A;  2PTS A;  3KDY A;  2QVE A;  1T6P A;  4BAA A;  1B8F A;  2O7D A;  2QGA B;  1GKJ A;  4ADL A;  1TJW A;  1GK2 A;  4EFC A;  4NLE A;  1AUW A;  1YIS A;  3R6Y A;  1RE5 A;  4FFX A;  3NZ4 A;  1FUR A;  4NSL A;  4C5S A;  4CQ5 A;  3UNV A;  1GKM A;  5EYV A;  1YFM A;  1EB4 A;  1FUQ A;  2RJR A;  1C3C A;  4APA A;  4BAB A;  1U16 A;  3GZH A;  1Q5N A;  2VD6 A;  5D6B A;  3NO9 A;  2RJS A;  1GK3 A;  3CZO A;  2O6Y A;  2PTQ A;  3OCE A;  5EYT A;  2OHY A;  3E04 A;  3KDZ A;  1K7W A;  1J3U A;  1I0A A;  2PTR A;  2O7F A;  3C8T A;  2HVG A;  4APB A;  3R6Q A;  1VDK A;  4C5U A;  3OCF A;  3QBP A;  1T6J A;  3R6V A;  1YFE A;  1XWO A;  4EEI A;  1TJ7 A;  2J91 A;  2YII A;  3RD8 A;  1U15 A;  1JSW A;  4C5R A;  5HW2 A;  1DOF A;  4V2Q A;  1HY1 A;  5F91 A;  2O7B A;  3RRP A;  4ADM A;  3BHG A;  2O78 A;  2NYF A;  2O7E A;  1HY0 A;  1W27 A;  1Y2M A;  1FUP A;  1K62 A; 
#chains in the Genus database with same CATH topology
 4C6G A;  3TV2 A;  5F92 A;  1Z4M A;  4HGV A;  1C3U A;  1TJV A;  2E9F A;  2VSF A;  4YIK A;  1TJU A;  2NYN A;  2JAW A;  1KQ7 A;  1FUO A;  1DCN A;  2FUS A;  2X75 A;  1XMD A;  3GTD A;  4V2R A;  5M0I A;  2PFM A;  1U0L A;  4MX2 A;  4YIH A;  4FLC A;  2PTS A;  3KDY A;  1XLY A;  2QVE A;  1T6P A;  4BAA A;  1B8F A;  2D27 A;  2QGA B;  1Z4P X;  1Z4K A;  3BWV A;  1GKJ A;  1XMC A;  2O7D A;  4ADL A;  1TJW A;  1GK2 A;  1Q92 A;  4EFC A;  5M0J A;  4NLE A;  1AUW A;  1XL7 A;  1Z4Q A;  1YIS A;  3R6Y A;  1RE5 A;  4FFX A;  3NZ4 A;  4L6A A;  1FUR A;  4NSL A;  4C5S A;  1MH9 A;  4CQ5 A;  1T9H A;  3UNV A;  1GKM A;  5EYV A;  2JAO A;  2FEL A;  1YFM A;  1EB4 A;  1FUQ A;  2RJR A;  1C3C A;  4L6C A;  4APA A;  4BAB A;  1U16 A;  3GZH A;  3U19 A;  1Q5N A;  3F4S A;  3CRW 1;  1IW7 D;  1Z4L A;  5D6B A;  2VD6 A;  3NO9 A;  2RJS A;  1GK3 A;  3U13 A;  3CZO A;  2O6Y A;  2PTQ A;  3OCE A;  5EYT A;  2OHY A;  3E04 A;  2D28 C;  3KDZ A;  1K7W A;  2I7D A;  3CI0 K;  1J3U A;  2VL7 A;  1Q91 A;  1I0A A;  2PTR A;  2O7F A;  3C8T A;  2HVG A;  4MWO A;  4APB A;  3R6Q A;  1XL8 A;  4L57 A;  1VDK A;  4C5U A;  3OCF A;  3QBP A;  1Z4I A;  1Z4J A;  3R6V A;  1YFE A;  1T6J A;  4A15 A;  1XWO A;  3CRV A;  4EEI A;  1TJ7 A;  2J91 A;  2YII A;  3RD8 A;  1U15 A;  1JSW A;  4C5R A;  5HW2 A;  4NFL A;  1DOF A;  2RCN A;  4V2Q A;  1HY1 A;  5F91 A;  2JAU A;  2JAR A;  2YV5 A;  2O7B A;  5H8W A;  3RRP A;  3F4R A;  4ADM A;  3BHG A;  2O78 A;  3F4T A;  2NYF A;  2O7E A;  1HY0 A;  1W27 A;  1Y2M A;  4IQJ M;  4E88 A;  1FUP A;  4WNL A;  4MUM A;  2FEN A;  1K62 A; 
#chains in the Genus database with same CATH homology
 4C6G A;  3TV2 A;  5F92 A;  4HGV A;  1C3U A;  1TJV A;  2E9F A;  1TJU A;  2NYN A;  1KQ7 A;  1FUO A;  1DCN A;  2FUS A;  2X75 A;  3GTD A;  4V2R A;  2PFM A;  4MX2 A;  4FLC A;  2PTS A;  3KDY A;  2QVE A;  1T6P A;  4BAA A;  1B8F A;  2O7D A;  2QGA B;  1GKJ A;  4ADL A;  1TJW A;  1GK2 A;  4EFC A;  4NLE A;  1AUW A;  1YIS A;  3R6Y A;  1RE5 A;  4FFX A;  3NZ4 A;  1FUR A;  4NSL A;  4C5S A;  4CQ5 A;  3UNV A;  1GKM A;  5EYV A;  1YFM A;  1EB4 A;  1FUQ A;  2RJR A;  1C3C A;  4APA A;  4BAB A;  1U16 A;  3GZH A;  1Q5N A;  2VD6 A;  5D6B A;  3NO9 A;  2RJS A;  1GK3 A;  3CZO A;  2O6Y A;  2PTQ A;  3OCE A;  5EYT A;  2OHY A;  3E04 A;  3KDZ A;  1K7W A;  1J3U A;  1I0A A;  2PTR A;  2O7F A;  3C8T A;  2HVG A;  4APB A;  3R6Q A;  1VDK A;  4C5U A;  3OCF A;  3QBP A;  1T6J A;  3R6V A;  1YFE A;  1XWO A;  4EEI A;  1TJ7 A;  2J91 A;  2YII A;  3RD8 A;  1U15 A;  1JSW A;  4C5R A;  5HW2 A;  1DOF A;  4V2Q A;  1HY1 A;  5F91 A;  2O7B A;  3RRP A;  4ADM A;  3BHG A;  2O78 A;  2NYF A;  2O7E A;  1HY0 A;  1W27 A;  1Y2M A;  1FUP A;  1K62 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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