2QGAB

Plasmodium vivax adenylosuccinate lyase pv003765 with amp bound
Total Genus 181
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
181
sequence length
461
structure length
454
Chain Sequence
EHLKNISPIDGRYKKACGELSAFFSEHALIKHRIIVEVRWLLFLNEEELFFEKVTDHSVEVLNQIATNITDSDIARVKAIEEETNHDVKAVEYFVKEKLKNSKREDLLKIKEYVHYLCTSEDINNVAYATCLKACLNDVVIPCLEKIMLKLKDLAVEYSHVPLLSRTHGQPASSTTFGKEMANFYARIHHHVGVIRRVKVCAKFNGAVGNFNAHKVASKDTDWVNTIGLFLKKHFNLTYSIYCTQIQDHDYICELCDGLARANGTLIDLCVDIWLYISNNLLKLKSSTMPHKVNPIDFENAEGNLHIANAFFKLFSSKLPTSRLQRDLSDSTVLRNIGSSLAYCLIAYKSVLKGLNKIDIDRRNLEEELNQNWSTLAEPIQIVMKRHNYVDAYEELKQFTRGKVIDQKIMQEFIKTKCAFLPQDVVDQLLELTPATYTGYADYLAKNVERLSGE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
source organism Plasmodium vivax
publication title Plasmodium vivax adenylosuccinate lyase Pv003765 with AMP bound
rcsb
molecule keywords Adenylosuccinate lyase
total genus 181
structure length 454
sequence length 461
chains with identical sequence C
ec nomenclature ec 4.3.2.2: Adenylosuccinate lyase.
pdb deposition date 2007-06-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00206 Lyase_1 Lyase
B PF08328 ASL_C Adenylosuccinate lyase C-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.30 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 Fumarase/aspartase (C-terminal domain) 2qgaB03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 2qgaB01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2qgaB02
3E04A 1GK2A 3QBPA 3KDZA 2NYFA 4NSLA 1I0AA 4ADLA 3GZHA 1RE5A 2PTQA 1TJUA 5D6BA 1TJVA 1TJWA 4V2RA 3NO9A 1K7WA 3C8TA 5EYTA 3R6YA 4EEIA 1YISA 1DCNA 1K62A 2X75A 3GTDA 1GK3A 1AUWA 1EB4A 3KDYA 2YIIA 4EFCA 4V2QA 2J91A 1T6JA 4C6GA 2QGAB 2QVEA 5F92A 4FLCA 4APBA 1GKJA 2RJRA 1FURA 1YFEA 2VD6A 4ADMA 1U16A 3NZ4A 1FUPA 1C3CA 2PTSA 2HVGA 1W27A 1FUOA 1VDKA 1TJ7A 4FFXA 3BHGA 2RJSA 1GKMA 4C5UA 1Y2MA 3RRPA 2O7BA 2FUSA 4HGVA 4NLEA 5F91A 2O78A 2OHYA 1FUQA 1HY1A 4APAA 1C3UA 3R6VA 2E9FA 4C5RA 2O7FA 4C5SA 3R6QA 1U15A 1KQ7A 4MX2A 4CQ5A 1DOFA 2PFMA 1YFMA 5EYVA 1HY0A 1JSWA 1T6PA 3RD8A 2PTRA 3OCFA 5HW2A 4BAAA 3CZOA 1B8FA 3OCEA 1Q5NA 3TV2A 1J3UA 3UNVA 2O7DA 2NYNA 1XWOA 2O7EA 2O6YA 4BABA
chains in the Genus database with same CATH superfamily
3E04A 1GK2A 3QBPA 3KDZA 2FELA 2NYFA 4NSLA 1I0AA 4ADLA 3GZHA 1RE5A 2PTQA 1TJUA 4IQJM 3CRW1 4L6AA 5D6BA 1TJVA 1TJWA 4V2RA 5H8WA 4A15A 3NO9A 1K7WA 1U0LA 3C8TA 5M0JA 4MWOA 5EYTA 1XL7A 4MUMA 3R6YA 4EEIA 1Z4MA 1YISA 1DCNA 1K62A 2X75A 1Z4LA 3GTDA 4YIKA 1GK3A 1AUWA 1EB4A 3KDYA 2YIIA 4EFCA 1T9HA 4V2QA 2J91A 1T6JA 4C6GA 3F4TA 2QGAB 2QVEA 5F92A 1Z4JA 1XMDA 4FLCA 4APBA 1GKJA 4L6CA 2RJRA 2YV5A 1FURA 1Z4KA 1YFEA 2VD6A 4ADMA 1U16A 1Q92A 4L57A 1FUPA 3NZ4A 1C3CA 2PTSA 4WNLA 2HVGA 3F4RA 2D28C 1W27A 2RCNA 1FUOA 2JAOA 1VDKA 1TJ7A 4YIHA 3BWVA 1Z4IA 1IW7D 1Z4PX 4FFXA 3BHGA 2RJSA 1XL8A 1GKMA 1XMCA 4C5UA 1Y2MA 3RRPA 1Q91A 2O7BA 2FUSA 4HGVA 4NLEA 5F91A 3U13A 3CRVA 2O78A 2OHYA 2VL7A 1FUQA 1HY1A 4NFLA 4APAA 1C3UA 4E88A 2I7DA 3R6VA 2E9FA 4C5RA 2O7FA 4C5SA 3R6QA 1U15A 2JAUA 1KQ7A 4MX2A 4CQ5A 5M0IA 2JARA 2FENA 1DOFA 2PFMA 2JAWA 1YFMA 5EYVA 1HY0A 1JSWA 3CI0K 1T6PA 3RD8A 2D27A 2PTRA 3OCFA 5HW2A 4BAAA 3CZOA 1XLYA 1B8FA 3OCEA 1Q5NA 3TV2A 1J3UA 3F4SA 3UNVA 2O7DA 1Z4QA 3U19A 2NYNA 1XWOA 2O7EA 2O6YA 1MH9A 2VSFA 4BABA
chains in the Genus database with same CATH topology
3E04A 1GK2A 3QBPA 3KDZA 2NYFA 4NSLA 1I0AA 4ADLA 3GZHA 1RE5A 2PTQA 1TJUA 5D6BA 1TJVA 1TJWA 4V2RA 3NO9A 1K7WA 3C8TA 5EYTA 3R6YA 4EEIA 1YISA 1DCNA 1K62A 2X75A 3GTDA 1GK3A 1AUWA 1EB4A 3KDYA 2YIIA 4EFCA 4V2QA 2J91A 1T6JA 4C6GA 2QGAB 2QVEA 5F92A 4FLCA 4APBA 1GKJA 2RJRA 1FURA 1YFEA 2VD6A 4ADMA 1U16A 3NZ4A 1FUPA 1C3CA 2PTSA 2HVGA 1W27A 1FUOA 1VDKA 1TJ7A 4FFXA 3BHGA 2RJSA 1GKMA 4C5UA 1Y2MA 3RRPA 2O7BA 2FUSA 4HGVA 4NLEA 5F91A 2O78A 2OHYA 1FUQA 1HY1A 4APAA 1C3UA 3R6VA 2E9FA 4C5RA 2O7FA 4C5SA 3R6QA 1U15A 1KQ7A 4MX2A 4CQ5A 1DOFA 2PFMA 1YFMA 5EYVA 1HY0A 1JSWA 1T6PA 3RD8A 2PTRA 3OCFA 5HW2A 4BAAA 3CZOA 1B8FA 3OCEA 1Q5NA 3TV2A 1J3UA 3UNVA 2O7DA 2NYNA 1XWOA 2O7EA 2O6YA 4BABA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3E04 A;  1GK2 A;  3QBP A;  3KDZ A;  2NYF A;  4NSL A;  1I0A A;  4ADL A;  3GZH A;  1RE5 A;  2PTQ A;  1TJU A;  5D6B A;  1TJV A;  1TJW A;  4V2R A;  3NO9 A;  1K7W A;  3C8T A;  5EYT A;  3R6Y A;  4EEI A;  1YIS A;  1DCN A;  1K62 A;  2X75 A;  3GTD A;  1GK3 A;  1AUW A;  1EB4 A;  3KDY A;  2YII A;  4EFC A;  4V2Q A;  2J91 A;  1T6J A;  4C6G A;  2QGA B;  2QVE A;  5F92 A;  4FLC A;  4APB A;  1GKJ A;  2RJR A;  1FUR A;  1YFE A;  2VD6 A;  4ADM A;  1U16 A;  3NZ4 A;  1FUP A;  1C3C A;  2PTS A;  2HVG A;  1W27 A;  1FUO A;  1VDK A;  1TJ7 A;  4FFX A;  3BHG A;  2RJS A;  1GKM A;  4C5U A;  1Y2M A;  3RRP A;  2O7B A;  2FUS A;  4HGV A;  4NLE A;  5F91 A;  2O78 A;  2OHY A;  1FUQ A;  1HY1 A;  4APA A;  1C3U A;  3R6V A;  2E9F A;  4C5R A;  2O7F A;  4C5S A;  3R6Q A;  1U15 A;  1KQ7 A;  4MX2 A;  4CQ5 A;  1DOF A;  2PFM A;  1YFM A;  5EYV A;  1HY0 A;  1JSW A;  1T6P A;  3RD8 A;  2PTR A;  3OCF A;  5HW2 A;  4BAA A;  3CZO A;  1B8F A;  3OCE A;  1Q5N A;  3TV2 A;  1J3U A;  3UNV A;  2O7D A;  2NYN A;  1XWO A;  2O7E A;  2O6Y A;  4BAB A; 
#chains in the Genus database with same CATH topology
 3E04 A;  1GK2 A;  3QBP A;  3KDZ A;  2FEL A;  2NYF A;  4NSL A;  1I0A A;  4ADL A;  3GZH A;  1RE5 A;  2PTQ A;  1TJU A;  4IQJ M;  3CRW 1;  4L6A A;  5D6B A;  1TJV A;  1TJW A;  4V2R A;  5H8W A;  4A15 A;  3NO9 A;  1K7W A;  1U0L A;  3C8T A;  5M0J A;  4MWO A;  5EYT A;  1XL7 A;  4MUM A;  3R6Y A;  4EEI A;  1Z4M A;  1YIS A;  1DCN A;  1K62 A;  2X75 A;  1Z4L A;  3GTD A;  4YIK A;  1GK3 A;  1AUW A;  1EB4 A;  3KDY A;  2YII A;  4EFC A;  1T9H A;  4V2Q A;  2J91 A;  1T6J A;  4C6G A;  3F4T A;  2QGA B;  2QVE A;  5F92 A;  1Z4J A;  1XMD A;  4FLC A;  4APB A;  1GKJ A;  4L6C A;  2RJR A;  2YV5 A;  1FUR A;  1Z4K A;  1YFE A;  2VD6 A;  4ADM A;  1U16 A;  1Q92 A;  4L57 A;  1FUP A;  3NZ4 A;  1C3C A;  2PTS A;  4WNL A;  2HVG A;  3F4R A;  2D28 C;  1W27 A;  2RCN A;  1FUO A;  2JAO A;  1VDK A;  1TJ7 A;  4YIH A;  3BWV A;  1Z4I A;  1IW7 D;  1Z4P X;  4FFX A;  3BHG A;  2RJS A;  1XL8 A;  1GKM A;  1XMC A;  4C5U A;  1Y2M A;  3RRP A;  1Q91 A;  2O7B A;  2FUS A;  4HGV A;  4NLE A;  5F91 A;  3U13 A;  3CRV A;  2O78 A;  2OHY A;  2VL7 A;  1FUQ A;  1HY1 A;  4NFL A;  4APA A;  1C3U A;  4E88 A;  2I7D A;  3R6V A;  2E9F A;  4C5R A;  2O7F A;  4C5S A;  3R6Q A;  1U15 A;  2JAU A;  1KQ7 A;  4MX2 A;  4CQ5 A;  5M0I A;  2JAR A;  2FEN A;  1DOF A;  2PFM A;  2JAW A;  1YFM A;  5EYV A;  1HY0 A;  1JSW A;  3CI0 K;  1T6P A;  3RD8 A;  2D27 A;  2PTR A;  3OCF A;  5HW2 A;  4BAA A;  3CZO A;  1XLY A;  1B8F A;  3OCE A;  1Q5N A;  3TV2 A;  1J3U A;  3F4S A;  3UNV A;  2O7D A;  1Z4Q A;  3U19 A;  2NYN A;  1XWO A;  2O7E A;  2O6Y A;  1MH9 A;  2VSF A;  4BAB A; 
#chains in the Genus database with same CATH homology
 3E04 A;  1GK2 A;  3QBP A;  3KDZ A;  2NYF A;  4NSL A;  1I0A A;  4ADL A;  3GZH A;  1RE5 A;  2PTQ A;  1TJU A;  5D6B A;  1TJV A;  1TJW A;  4V2R A;  3NO9 A;  1K7W A;  3C8T A;  5EYT A;  3R6Y A;  4EEI A;  1YIS A;  1DCN A;  1K62 A;  2X75 A;  3GTD A;  1GK3 A;  1AUW A;  1EB4 A;  3KDY A;  2YII A;  4EFC A;  4V2Q A;  2J91 A;  1T6J A;  4C6G A;  2QGA B;  2QVE A;  5F92 A;  4FLC A;  4APB A;  1GKJ A;  2RJR A;  1FUR A;  1YFE A;  2VD6 A;  4ADM A;  1U16 A;  3NZ4 A;  1FUP A;  1C3C A;  2PTS A;  2HVG A;  1W27 A;  1FUO A;  1VDK A;  1TJ7 A;  4FFX A;  3BHG A;  2RJS A;  1GKM A;  4C5U A;  1Y2M A;  3RRP A;  2O7B A;  2FUS A;  4HGV A;  4NLE A;  5F91 A;  2O78 A;  2OHY A;  1FUQ A;  1HY1 A;  4APA A;  1C3U A;  3R6V A;  2E9F A;  4C5R A;  2O7F A;  4C5S A;  3R6Q A;  1U15 A;  1KQ7 A;  4MX2 A;  4CQ5 A;  1DOF A;  2PFM A;  1YFM A;  5EYV A;  1HY0 A;  1JSW A;  1T6P A;  3RD8 A;  2PTR A;  3OCF A;  5HW2 A;  4BAA A;  3CZO A;  1B8F A;  3OCE A;  1Q5N A;  3TV2 A;  1J3U A;  3UNV A;  2O7D A;  2NYN A;  1XWO A;  2O7E A;  2O6Y A;  4BAB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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