2QH1A

Structure of ta289, a cbs-rubredoxin-like protein, in its fe+2-bound state
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
179
structure length
179
Chain Sequence
HMFMRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRASITDILLSHRTKDYQHLCPKCGVGVLEPVYNEKGEIKVFRCSNPACDYEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Biochemical and structural characterization of a novel family of cystathionine beta-synthase domain proteins fused to a Zn ribbon-like domain.
pubmed doi rcsb
molecule keywords Hypothetical protein Ta0289
molecule tags Unknown function
source organism Thermoplasma acidophilum
total genus 51
structure length 179
sequence length 179
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-06-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00571 CBS CBS domain
A PF09151 DUF1936 Domain of unknown function (DUF1936)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 2qh1A00
2YVZA 4P1GA 4IY3A 1PBJA 2RIHA 3L2BA 4DQWA 5IIPA 3PC2A 4L3VA 4GQVA 5MMZA 4GQYA 2ZY9A 3FHMA 4ESYA 2NYCA 4COOA 4IYSA 2UV5A 4FRYA 2QLVC 3L31A 3FWRA 2P9MA 4NOCA 4PCUA 3I8NA 4IY0A 2O16A 2QH1A 2PFIA 3KPBA 5K22B 4HG0A 3T4NC 2UV7A 3PC4A 4O9KA 3OCMA 4IY4A 2YVXA 3TE5C 3SL7A 3LV9A 2RIFA 2QREE 4ESYB 3LHHA 3DDJA 3HF7A 5K23C 2QRCE 3KXRA 2YVYA 2OOYE 3PC3A 2OOXE 3K6EA 2NYEA 2OUXA 4IY2A 1PVMA 1Y5HA 1O50A 3FNAA 4UUUA 2YZQA 2D4ZA 2QR1E 2RC3A 3LFZA 3K2VA 4P1OA 2YZIA 4GQWA 2QRDE 4L0DA 3ORGA 3KPCA 1YAVA 3TDHC 3KPDA 3KH5A 2UV6A 2EMQA 5K24C 2EF7A 3OCOA 5LXQA 3GBYA 2UV4A 3OI8A 1XKFA 3FWSA 5KS7A 4FXSA 3LQNA 3FV6A 5K25C 4L28A 4L27A
chains in the Genus database with same CATH superfamily
2YVZA 4P1GA 4IY3A 1PBJA 2RIHA 3L2BA 4DQWA 5IIPA 3PC2A 4L3VA 4GQVA 5MMZA 4GQYA 2ZY9A 3FHMA 4ESYA 2JA3A 2NYCA 4COOA 4IYSA 2UV5A 4FRYA 2QLVC 3L31A 3FWRA 2P9MA 4NOCA 4PCUA 3I8NA 4IY0A 2O16A 2QH1A 2PFIA 3KPBA 5K22B 4HG0A 3T4NC 2UV7A 3PC4A 4O9KA 3OCMA 4IY4A 2YVXA 3TE5C 3SL7A 3LV9A 4L27A 2RIFA 2QREE 4ESYB 3LHHA 3DDJA 3HF7A 5K23C 2QRCE 3KXRA 2YVYA 2OOYE 3PC3A 3K6EA 2NYEA 2OUXA 4IY2A 1PVMA 1Y5HA 1O50A 2J9LA 3FNAA 4UUUA 2YZQA 2D4ZA 2QR1E 2RC3A 3LFZA 3K2VA 4P1OA 2YZIA 4GQWA 2QRDE 4L0DA 3ORGA 3KPCA 1YAVA 3TDHC 3KPDA 3KH5A 2UV6A 2EMQA 5K24C 2EF7A 3OCOA 5LXQA 3GBYA 2UV4A 3OI8A 1XKFA 3FWSA 5KS7A 4FXSA 3LQNA 3FV6A 5K25C 4L28A 2OOXE
chains in the Genus database with same CATH topology
2YVZA 4P1GA 4IY3A 1PBJA 2RIHA 3L2BA 4DQWA 5IIPA 3PC2A 4L3VA 4GQVA 5MMZA 4GQYA 2ZY9A 3FHMA 4ESYA 2JA3A 2NYCA 4COOA 4IYSA 2UV5A 4FRYA 2QLVC 3L31A 3FWRA 2P9MA 4NOCA 4PCUA 3I8NA 4IY0A 2O16A 2QH1A 2PFIA 3KPBA 5K22B 4HG0A 3T4NC 2UV7A 3PC4A 4O9KA 3OCMA 4IY4A 2YVXA 3TE5C 3SL7A 3LV9A 4L27A 2RIFA 2QREE 4ESYB 3LHHA 3DDJA 3HF7A 5K23C 2QRCE 3KXRA 2YVYA 2OOYE 3PC3A 3K6EA 2NYEA 2OUXA 4IY2A 1PVMA 1Y5HA 1O50A 2J9LA 3FNAA 4UUUA 2YZQA 2D4ZA 2QR1E 2RC3A 3LFZA 3K2VA 4P1OA 2YZIA 4GQWA 2QRDE 4L0DA 3ORGA 3KPCA 1YAVA 3TDHC 3KPDA 3KH5A 2UV6A 2EMQA 5K24C 2EF7A 3OCOA 5LXQA 3GBYA 2UV4A 3OI8A 1XKFA 3FWSA 5KS7A 4FXSA 3LQNA 3FV6A 5K25C 4L28A 2OOXE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YVZ A;  4P1G A;  4IY3 A;  1PBJ A;  2RIH A;  3L2B A;  4DQW A;  5IIP A;  3PC2 A;  4L3V A;  4GQV A;  5MMZ A;  4GQY A;  2ZY9 A;  3FHM A;  4ESY A;  2NYC A;  4COO A;  4IYS A;  2UV5 A;  4FRY A;  2QLV C;  3L31 A;  3FWR A;  2P9M A;  4NOC A;  4PCU A;  3I8N A;  4IY0 A;  2O16 A;  2QH1 A;  2PFI A;  3KPB A;  5K22 B;  4HG0 A;  3T4N C;  2UV7 A;  3PC4 A;  4O9K A;  3OCM A;  4IY4 A;  2YVX A;  3TE5 C;  3SL7 A;  3LV9 A;  2RIF A;  2QRE E;  4ESY B;  3LHH A;  3DDJ A;  3HF7 A;  5K23 C;  2QRC E;  3KXR A;  2YVY A;  2OOY E;  3PC3 A;  2OOX E;  3K6E A;  2NYE A;  2OUX A;  4IY2 A;  1PVM A;  1Y5H A;  1O50 A;  3FNA A;  4UUU A;  2YZQ A;  2D4Z A;  2QR1 E;  2RC3 A;  3LFZ A;  3K2V A;  4P1O A;  2YZI A;  4GQW A;  2QRD E;  4L0D A;  3ORG A;  3KPC A;  1YAV A;  3TDH C;  3KPD A;  3KH5 A;  2UV6 A;  2EMQ A;  5K24 C;  2EF7 A;  3OCO A;  5LXQ A;  3GBY A;  2UV4 A;  3OI8 A;  1XKF A;  3FWS A;  5KS7 A;  4FXS A;  3LQN A;  3FV6 A;  5K25 C;  4L28 A;  4L27 A; 
#chains in the Genus database with same CATH topology
 2YVZ A;  4P1G A;  4IY3 A;  1PBJ A;  2RIH A;  3L2B A;  4DQW A;  5IIP A;  3PC2 A;  4L3V A;  4GQV A;  5MMZ A;  4GQY A;  2ZY9 A;  3FHM A;  4ESY A;  2JA3 A;  2NYC A;  4COO A;  4IYS A;  2UV5 A;  4FRY A;  2QLV C;  3L31 A;  3FWR A;  2P9M A;  4NOC A;  4PCU A;  3I8N A;  4IY0 A;  2O16 A;  2QH1 A;  2PFI A;  3KPB A;  5K22 B;  4HG0 A;  3T4N C;  2UV7 A;  3PC4 A;  4O9K A;  3OCM A;  4IY4 A;  2YVX A;  3TE5 C;  3SL7 A;  3LV9 A;  4L27 A;  2RIF A;  2QRE E;  4ESY B;  3LHH A;  3DDJ A;  3HF7 A;  5K23 C;  2QRC E;  3KXR A;  2YVY A;  2OOY E;  3PC3 A;  3K6E A;  2NYE A;  2OUX A;  4IY2 A;  1PVM A;  1Y5H A;  1O50 A;  2J9L A;  3FNA A;  4UUU A;  2YZQ A;  2D4Z A;  2QR1 E;  2RC3 A;  3LFZ A;  3K2V A;  4P1O A;  2YZI A;  4GQW A;  2QRD E;  4L0D A;  3ORG A;  3KPC A;  1YAV A;  3TDH C;  3KPD A;  3KH5 A;  2UV6 A;  2EMQ A;  5K24 C;  2EF7 A;  3OCO A;  5LXQ A;  3GBY A;  2UV4 A;  3OI8 A;  1XKF A;  3FWS A;  5KS7 A;  4FXS A;  3LQN A;  3FV6 A;  5K25 C;  4L28 A;  2OOX E; 
#chains in the Genus database with same CATH homology
 2YVZ A;  4P1G A;  4IY3 A;  1PBJ A;  2RIH A;  3L2B A;  4DQW A;  5IIP A;  3PC2 A;  4L3V A;  4GQV A;  5MMZ A;  4GQY A;  2ZY9 A;  3FHM A;  4ESY A;  2JA3 A;  2NYC A;  4COO A;  4IYS A;  2UV5 A;  4FRY A;  2QLV C;  3L31 A;  3FWR A;  2P9M A;  4NOC A;  4PCU A;  3I8N A;  4IY0 A;  2O16 A;  2QH1 A;  2PFI A;  3KPB A;  5K22 B;  4HG0 A;  3T4N C;  2UV7 A;  3PC4 A;  4O9K A;  3OCM A;  4IY4 A;  2YVX A;  3TE5 C;  3SL7 A;  3LV9 A;  4L27 A;  2RIF A;  2QRE E;  4ESY B;  3LHH A;  3DDJ A;  3HF7 A;  5K23 C;  2QRC E;  3KXR A;  2YVY A;  2OOY E;  3PC3 A;  3K6E A;  2NYE A;  2OUX A;  4IY2 A;  1PVM A;  1Y5H A;  1O50 A;  2J9L A;  3FNA A;  4UUU A;  2YZQ A;  2D4Z A;  2QR1 E;  2RC3 A;  3LFZ A;  3K2V A;  4P1O A;  2YZI A;  4GQW A;  2QRD E;  4L0D A;  3ORG A;  3KPC A;  1YAV A;  3TDH C;  3KPD A;  3KH5 A;  2UV6 A;  2EMQ A;  5K24 C;  2EF7 A;  3OCO A;  5LXQ A;  3GBY A;  2UV4 A;  3OI8 A;  1XKF A;  3FWS A;  5KS7 A;  4FXS A;  3LQN A;  3FV6 A;  5K25 C;  4L28 A;  2OOX E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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