2QH7A

Mitoneet is a uniquely folded 2fe-2s outer mitochondrial membrane protein stabilized by pioglitazone
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
65
structure length
65
Chain Sequence
KAMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Metal binding protein
molecule keywords Zinc finger CDGSH-type domain 1
publication title MitoNEET is a uniquely folded 2Fe 2S outer mitochondrial membrane protein stabilized by pioglitazone.
pubmed doi rcsb
source organism Homo sapiens
total genus 11
structure length 65
sequence length 65
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-06-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09360 zf-CDGSH Iron-binding zinc finger CDGSH type
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.5.90 Alpha Beta 3-Layer(aba) Sandwich Ribosomal Protein L9; domain 1 Ribosomal Protein L9; domain 1 2qh7A01
4OOAA 3FNVA 3S2QA 3S2RA 2QD0A 4EZFA 3LPQA 4F1EA 2QH7A 3TBOA 3REEA 3TBNA 4F2CA 2R13A 4OO7A 4F28A 3EW0A
chains in the Genus database with same CATH superfamily
3S2QA 1CQUA 3CO4A 2Q9QA 2X4AA 3J7ZH 2E9XB 2HJQA 3FNDA 2LSMA 4KW7A 4OO7A 4OOAA 2HBAA 2QD0A 2HBBA 3ANWA 4F1EA 2QH7A 4UY8H 1DIVA 4FSDA 2E9XD 5EG5A 3S2RA 4FS8A 5GHRB 2X49A 3FNVA 5GHSC 3LPQA 2Q9QB 3TBOA 4F2CA 4RSRA 2R13A 4F28A 3EW0A 2HVFA 4EZFA 2EHOC 3TBNA 4FR0A 3REEA 2OUTA
chains in the Genus database with same CATH topology
3S2QA 2Q9QA 2X4AA 2E9XB 2LSMA 4KW7A 4OO7A 4OOAA 2QD0A 3ANWA 4F1EA 2QH7A 5EG5A 4FSDA 2E9XD 3S2RA 4FS8A 5GHRB 2X49A 3FNVA 5GHSC 3LPQA 2Q9QB 3TBOA 4F2CA 4RSRA 2R13A 4F28A 3EW0A 4EZFA 2EHOC 3TBNA 4FR0A 3REEA 2OUTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OOA A;  3FNV A;  3S2Q A;  3S2R A;  2QD0 A;  4EZF A;  3LPQ A;  4F1E A;  2QH7 A;  3TBO A;  3REE A;  3TBN A;  4F2C A;  2R13 A;  4OO7 A;  4F28 A;  3EW0 A; 
#chains in the Genus database with same CATH topology
 3S2Q A;  1CQU A;  3CO4 A;  2Q9Q A;  2X4A A;  3J7Z H;  2E9X B;  2HJQ A;  3FND A;  2LSM A;  4KW7 A;  4OO7 A;  4OOA A;  2HBA A;  2QD0 A;  2HBB A;  3ANW A;  4F1E A;  2QH7 A;  4UY8 H;  1DIV A;  4FSD A;  2E9X D;  5EG5 A;  3S2R A;  4FS8 A;  5GHR B;  2X49 A;  3FNV A;  5GHS C;  3LPQ A;  2Q9Q B;  3TBO A;  4F2C A;  4RSR A;  2R13 A;  4F28 A;  3EW0 A;  2HVF A;  4EZF A;  2EHO C;  3TBN A;  4FR0 A;  3REE A;  2OUT A; 
#chains in the Genus database with same CATH homology
 3S2Q A;  2Q9Q A;  2X4A A;  2E9X B;  2LSM A;  4KW7 A;  4OO7 A;  4OOA A;  2QD0 A;  3ANW A;  4F1E A;  2QH7 A;  5EG5 A;  4FSD A;  2E9X D;  3S2R A;  4FS8 A;  5GHR B;  2X49 A;  3FNV A;  5GHS C;  3LPQ A;  2Q9Q B;  3TBO A;  4F2C A;  4RSR A;  2R13 A;  4F28 A;  3EW0 A;  4EZF A;  2EHO C;  3TBN A;  4FR0 A;  3REE A;  2OUT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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