2QJ9A

Crystal structure analysis of bmp-2 in complex with bmpr-ia variant b1
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
104
structure length
104
Chain Sequence
KSSCKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTLVNSVNSKIPKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cytokine/receptor
molecule keywords Bone morphogenetic protein 2
publication title Structure analysis of bone morphogenetic protein-2 type I receptor complexes reveals a mechanism of receptor inactivation in juvenile polyposis syndrome.
pubmed doi rcsb
source organism Homo sapiens
total genus 15
structure length 104
sequence length 104
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-07-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00019 TGF_beta Transforming growth factor beta like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 2qj9A00
1S4YB 1TFGA 4EFVA 1HRPA 2X1WA 2GOOA 4X1JA 4MIDA 1FL7A 1TGJA 4BV4L 3BDYV 1MKGA 1JPYA 2QR0C 4N1DA 1SG1A 1B8KA 3FUBB 4YCIC 5HI4A 2GYRA 2PJYA 1RV6V 2QJ9A 1HCNB 3BMPA 1BTGA 2QCWA 2P6AA 1BMPA 1HCFA 1QFWB 1XWDB 1BETA 3QB4A 4EAXA 1FLTV 1MKKA 1CZ8V 5AEJA 3S1KV 4AY9A 5BQEB 1QFWA 2X1XE 1XWDA 3BUKA 2ARPA 2H64A 5FV1V 2TGIA 1TZIV 1WQ8A 1SGFB 1PDGA 1TZHV 4MPLA 1VPPV 2FJGV 5E4GA 3V2AA 5BQCA 5BQ8B 1NT3A 5F3BC 4HQXA 1B8MB 5FV2V 4GLNE 1NYUB 2GYZA 1KLAA 3E07A 4QAFC 1LXIA 5HI3A 5BQBA 1WAQA 2V5EB 5F3HI 5HK5A 3BK3A 5HI5A 4LXRJ 1BJ1V 1FZVA 4HR9A 4YCGC 1HCNA 3QTKA 4QHUC 1REWA 2GNNA 4EDXV 2VWEA 3MJGA 5HK5E 2QJBA 3MJKA 4UHZA 4QCIC 3IJ2A 1REUA 2VXSA 5HHCA 5BQEA 4HSAA 1QTYR 2XACA 4HQUA 4EDWV 5HHXA 2C7WA 1AGQA 1DZ7A 1VPFA 2B0UA 1BNDB 3JVFA 5BQ8A 2XV7A 2ARVA 2BHKA 1B8MA 3EVSB 4WPBA 1E9JA 1BNDA 1B98A 3S1BV 2R52A 2ASKA 4UI1A 3EO1C 1KTZA 1AOCA 2KD3A 3SEKB 1MJVA 1WQ9B 3HH2A 1KATW 4LXSJ 4UI2B 5BPUA 1ES7A 3P9WA 5HHDA 1WQ9A 1ZKZA 1KLCA 4GLSE 4XPJA 4KV5A 2FJHV 4KXZA 4ZBNA 1M4UA 3B4VA 4KZNA 4ZFFC 2R53A 2IFGE 2H62A 4UHYA 3RJRA 1M4UL 4AY9B 4EC7A 2QJAA 1WWWV 5HHVA 4MQWB 2QCQA 4UI0A 3V6BA 3KFDA 1HRPB 1NYSB 1TGKA 4FAOA 5BQ8D 1HD4A 2VPFA 4MQWA 5JZ7A 1LX5A 2GH0C 1FL7B
chains in the Genus database with same CATH superfamily
1S4YB 1TFGA 4EFVA 1HRPA 2X1WA 2GOOA 4X1JA 4MIDA 1FL7A 1TGJA 4BV4L 3BDYV 1MKGA 1JPYA 2QR0C 4N1DA 1SG1A 1B8KA 3FUBB 4YCIC 5HI4A 2GYRA 2PJYA 1RV6V 2QJ9A 1HCNB 3BMPA 1BTGA 2QCWA 2P6AA 1BMPA 1HCFA 1QFWB 1XWDB 1BETA 3QB4A 4EAXA 1FLTV 1MKKA 1CZ8V 5AEJA 3S1KV 4AY9A 5BQEB 1QFWA 2X1XE 1XWDA 3BUKA 2ARPA 2H64A 5FV1V 2TGIA 1TZIV 1WQ8A 1SGFB 1PDGA 1TZHV 4MPLA 1VPPV 2FJGV 5E4GA 3V2AA 5BQCA 5BQ8B 1NT3A 5F3BC 4HQXA 1B8MB 5FV2V 4GLNE 1NYUB 2GYZA 1KLAA 3E07A 4QAFC 1LXIA 5HI3A 5BQBA 1WAQA 2V5EB 5F3HI 5HK5A 3BK3A 5HI5A 4LXRJ 1BJ1V 1FZVA 4HR9A 4YCGC 1HCNA 3QTKA 4QHUC 1REWA 2GNNA 4EDXV 2VWEA 3MJGA 5HK5E 2QJBA 3MJKA 4UHZA 4QCIC 3IJ2A 1REUA 2VXSA 5HHCA 5BQEA 4HSAA 1QTYR 2XACA 4HQUA 4EDWV 5HHXA 2C7WA 1AGQA 1DZ7A 1VPFA 2B0UA 1BNDB 3JVFA 5BQ8A 2XV7A 2ARVA 2BHKA 1B8MA 3EVSB 4WPBA 1E9JA 1BNDA 1B98A 3S1BV 2R52A 2ASKA 4UI1A 3EO1C 1KTZA 1AOCA 2KD3A 3SEKB 1MJVA 1WQ9B 3HH2A 1KATW 4LXSJ 4UI2B 5BPUA 1ES7A 3P9WA 5HHDA 1WQ9A 1ZKZA 1KLCA 4GLSE 4XPJA 4KV5A 2FJHV 4KXZA 4ZBNA 1M4UA 3B4VA 4KZNA 4ZFFC 2R53A 2IFGE 2H62A 4UHYA 3RJRA 1M4UL 4AY9B 4EC7A 2QJAA 1WWWV 5HHVA 4MQWB 2QCQA 4UI0A 3V6BA 3KFDA 1HRPB 1NYSB 1TGKA 4FAOA 5BQ8D 1HD4A 2VPFA 4MQWA 5JZ7A 1LX5A 2GH0C 1FL7B
chains in the Genus database with same CATH topology
1S4YB 1TFGA 4EFVA 1HRPA 2X1WA 2GOOA 4X1JA 4MIDA 1FL7A 1TGJA 4BV4L 3BDYV 1MKGA 1JPYA 2QR0C 4N1DA 1SG1A 1B8KA 3FUBB 4YCIC 5HI4A 2GYRA 2PJYA 1RV6V 2QJ9A 1HCNB 3BMPA 1BTGA 2QCWA 2P6AA 1BMPA 1HCFA 1QFWB 1XWDB 1BETA 3QB4A 4EAXA 1FLTV 1MKKA 1CZ8V 5AEJA 3S1KV 4AY9A 5BQEB 1QFWA 2X1XE 1XWDA 3BUKA 2ARPA 2H64A 5FV1V 2TGIA 1TZIV 1WQ8A 1SGFB 1PDGA 1TZHV 4MPLA 1VPPV 2FJGV 5E4GA 3V2AA 5BQCA 5BQ8B 1NT3A 5F3BC 4HQXA 1B8MB 5FV2V 4GLNE 1NYUB 2GYZA 1KLAA 3E07A 4QAFC 1LXIA 5HI3A 5BQBA 1WAQA 2V5EB 5F3HI 5HK5A 3BK3A 5HI5A 4LXRJ 1BJ1V 1FZVA 4HR9A 4YCGC 1HCNA 3QTKA 4QHUC 1REWA 2GNNA 4EDXV 2VWEA 3MJGA 5HK5E 2QJBA 3MJKA 4UHZA 4QCIC 3IJ2A 1REUA 2VXSA 5HHCA 5BQEA 4HSAA 1QTYR 2XACA 4HQUA 4EDWV 5HHXA 2C7WA 1AGQA 1DZ7A 1VPFA 2B0UA 1BNDB 3JVFA 5BQ8A 2XV7A 2ARVA 2BHKA 1B8MA 3EVSB 4WPBA 1E9JA 1BNDA 1B98A 3S1BV 2R52A 2ASKA 4UI1A 3EO1C 1KTZA 1AOCA 2KD3A 3SEKB 1MJVA 1WQ9B 3HH2A 1KATW 4LXSJ 4UI2B 5BPUA 1ES7A 3P9WA 5HHDA 1WQ9A 1ZKZA 1KLCA 4GLSE 4XPJA 4KV5A 2FJHV 4KXZA 4ZBNA 1M4UA 3B4VA 4KZNA 4ZFFC 2R53A 2IFGE 2H62A 4UHYA 3RJRA 1M4UL 4AY9B 4EC7A 2QJAA 1WWWV 5HHVA 4MQWB 2QCQA 4UI0A 3V6BA 3KFDA 1HRPB 1NYSB 1TGKA 4FAOA 5BQ8D 1HD4A 2VPFA 4MQWA 5JZ7A 1LX5A 2GH0C 1FL7B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1S4Y B;  1TFG A;  4EFV A;  1HRP A;  2X1W A;  2GOO A;  4X1J A;  4MID A;  1FL7 A;  1TGJ A;  4BV4 L;  3BDY V;  1MKG A;  1JPY A;  2QR0 C;  4N1D A;  1SG1 A;  1B8K A;  3FUB B;  4YCI C;  5HI4 A;  2GYR A;  2PJY A;  1RV6 V;  2QJ9 A;  1HCN B;  3BMP A;  1BTG A;  2QCW A;  2P6A A;  1BMP A;  1HCF A;  1QFW B;  1XWD B;  1BET A;  3QB4 A;  4EAX A;  1FLT V;  1MKK A;  1CZ8 V;  5AEJ A;  3S1K V;  4AY9 A;  5BQE B;  1QFW A;  2X1X E;  1XWD A;  3BUK A;  2ARP A;  2H64 A;  5FV1 V;  2TGI A;  1TZI V;  1WQ8 A;  1SGF B;  1PDG A;  1TZH V;  4MPL A;  1VPP V;  2FJG V;  5E4G A;  3V2A A;  5BQC A;  5BQ8 B;  1NT3 A;  5F3B C;  4HQX A;  1B8M B;  5FV2 V;  4GLN E;  1NYU B;  2GYZ A;  1KLA A;  3E07 A;  4QAF C;  1LXI A;  5HI3 A;  5BQB A;  1WAQ A;  2V5E B;  5F3H I;  5HK5 A;  3BK3 A;  5HI5 A;  4LXR J;  1BJ1 V;  1FZV A;  4HR9 A;  4YCG C;  1HCN A;  3QTK A;  4QHU C;  1REW A;  2GNN A;  4EDX V;  2VWE A;  3MJG A;  5HK5 E;  2QJB A;  3MJK A;  4UHZ A;  4QCI C;  3IJ2 A;  1REU A;  2VXS A;  5HHC A;  5BQE A;  4HSA A;  1QTY R;  2XAC A;  4HQU A;  4EDW V;  5HHX A;  2C7W A;  1AGQ A;  1DZ7 A;  1VPF A;  2B0U A;  1BND B;  3JVF A;  5BQ8 A;  2XV7 A;  2ARV A;  2BHK A;  1B8M A;  3EVS B;  4WPB A;  1E9J A;  1BND A;  1B98 A;  3S1B V;  2R52 A;  2ASK A;  4UI1 A;  3EO1 C;  1KTZ A;  1AOC A;  2KD3 A;  3SEK B;  1MJV A;  1WQ9 B;  3HH2 A;  1KAT W;  4LXS J;  4UI2 B;  5BPU A;  1ES7 A;  3P9W A;  5HHD A;  1WQ9 A;  1ZKZ A;  1KLC A;  4GLS E;  4XPJ A;  4KV5 A;  2FJH V;  4KXZ A;  4ZBN A;  1M4U A;  3B4V A;  4KZN A;  4ZFF C;  2R53 A;  2IFG E;  2H62 A;  4UHY A;  3RJR A;  1M4U L;  4AY9 B;  4EC7 A;  2QJA A;  1WWW V;  5HHV A;  4MQW B;  2QCQ A;  4UI0 A;  3V6B A;  3KFD A;  1HRP B;  1NYS B;  1TGK A;  4FAO A;  5BQ8 D;  1HD4 A;  2VPF A;  4MQW A;  5JZ7 A;  1LX5 A;  2GH0 C;  1FL7 B; 
#chains in the Genus database with same CATH topology
 1S4Y B;  1TFG A;  4EFV A;  1HRP A;  2X1W A;  2GOO A;  4X1J A;  4MID A;  1FL7 A;  1TGJ A;  4BV4 L;  3BDY V;  1MKG A;  1JPY A;  2QR0 C;  4N1D A;  1SG1 A;  1B8K A;  3FUB B;  4YCI C;  5HI4 A;  2GYR A;  2PJY A;  1RV6 V;  2QJ9 A;  1HCN B;  3BMP A;  1BTG A;  2QCW A;  2P6A A;  1BMP A;  1HCF A;  1QFW B;  1XWD B;  1BET A;  3QB4 A;  4EAX A;  1FLT V;  1MKK A;  1CZ8 V;  5AEJ A;  3S1K V;  4AY9 A;  5BQE B;  1QFW A;  2X1X E;  1XWD A;  3BUK A;  2ARP A;  2H64 A;  5FV1 V;  2TGI A;  1TZI V;  1WQ8 A;  1SGF B;  1PDG A;  1TZH V;  4MPL A;  1VPP V;  2FJG V;  5E4G A;  3V2A A;  5BQC A;  5BQ8 B;  1NT3 A;  5F3B C;  4HQX A;  1B8M B;  5FV2 V;  4GLN E;  1NYU B;  2GYZ A;  1KLA A;  3E07 A;  4QAF C;  1LXI A;  5HI3 A;  5BQB A;  1WAQ A;  2V5E B;  5F3H I;  5HK5 A;  3BK3 A;  5HI5 A;  4LXR J;  1BJ1 V;  1FZV A;  4HR9 A;  4YCG C;  1HCN A;  3QTK A;  4QHU C;  1REW A;  2GNN A;  4EDX V;  2VWE A;  3MJG A;  5HK5 E;  2QJB A;  3MJK A;  4UHZ A;  4QCI C;  3IJ2 A;  1REU A;  2VXS A;  5HHC A;  5BQE A;  4HSA A;  1QTY R;  2XAC A;  4HQU A;  4EDW V;  5HHX A;  2C7W A;  1AGQ A;  1DZ7 A;  1VPF A;  2B0U A;  1BND B;  3JVF A;  5BQ8 A;  2XV7 A;  2ARV A;  2BHK A;  1B8M A;  3EVS B;  4WPB A;  1E9J A;  1BND A;  1B98 A;  3S1B V;  2R52 A;  2ASK A;  4UI1 A;  3EO1 C;  1KTZ A;  1AOC A;  2KD3 A;  3SEK B;  1MJV A;  1WQ9 B;  3HH2 A;  1KAT W;  4LXS J;  4UI2 B;  5BPU A;  1ES7 A;  3P9W A;  5HHD A;  1WQ9 A;  1ZKZ A;  1KLC A;  4GLS E;  4XPJ A;  4KV5 A;  2FJH V;  4KXZ A;  4ZBN A;  1M4U A;  3B4V A;  4KZN A;  4ZFF C;  2R53 A;  2IFG E;  2H62 A;  4UHY A;  3RJR A;  1M4U L;  4AY9 B;  4EC7 A;  2QJA A;  1WWW V;  5HHV A;  4MQW B;  2QCQ A;  4UI0 A;  3V6B A;  3KFD A;  1HRP B;  1NYS B;  1TGK A;  4FAO A;  5BQ8 D;  1HD4 A;  2VPF A;  4MQW A;  5JZ7 A;  1LX5 A;  2GH0 C;  1FL7 B; 
#chains in the Genus database with same CATH homology
 1S4Y B;  1TFG A;  4EFV A;  1HRP A;  2X1W A;  2GOO A;  4X1J A;  4MID A;  1FL7 A;  1TGJ A;  4BV4 L;  3BDY V;  1MKG A;  1JPY A;  2QR0 C;  4N1D A;  1SG1 A;  1B8K A;  3FUB B;  4YCI C;  5HI4 A;  2GYR A;  2PJY A;  1RV6 V;  2QJ9 A;  1HCN B;  3BMP A;  1BTG A;  2QCW A;  2P6A A;  1BMP A;  1HCF A;  1QFW B;  1XWD B;  1BET A;  3QB4 A;  4EAX A;  1FLT V;  1MKK A;  1CZ8 V;  5AEJ A;  3S1K V;  4AY9 A;  5BQE B;  1QFW A;  2X1X E;  1XWD A;  3BUK A;  2ARP A;  2H64 A;  5FV1 V;  2TGI A;  1TZI V;  1WQ8 A;  1SGF B;  1PDG A;  1TZH V;  4MPL A;  1VPP V;  2FJG V;  5E4G A;  3V2A A;  5BQC A;  5BQ8 B;  1NT3 A;  5F3B C;  4HQX A;  1B8M B;  5FV2 V;  4GLN E;  1NYU B;  2GYZ A;  1KLA A;  3E07 A;  4QAF C;  1LXI A;  5HI3 A;  5BQB A;  1WAQ A;  2V5E B;  5F3H I;  5HK5 A;  3BK3 A;  5HI5 A;  4LXR J;  1BJ1 V;  1FZV A;  4HR9 A;  4YCG C;  1HCN A;  3QTK A;  4QHU C;  1REW A;  2GNN A;  4EDX V;  2VWE A;  3MJG A;  5HK5 E;  2QJB A;  3MJK A;  4UHZ A;  4QCI C;  3IJ2 A;  1REU A;  2VXS A;  5HHC A;  5BQE A;  4HSA A;  1QTY R;  2XAC A;  4HQU A;  4EDW V;  5HHX A;  2C7W A;  1AGQ A;  1DZ7 A;  1VPF A;  2B0U A;  1BND B;  3JVF A;  5BQ8 A;  2XV7 A;  2ARV A;  2BHK A;  1B8M A;  3EVS B;  4WPB A;  1E9J A;  1BND A;  1B98 A;  3S1B V;  2R52 A;  2ASK A;  4UI1 A;  3EO1 C;  1KTZ A;  1AOC A;  2KD3 A;  3SEK B;  1MJV A;  1WQ9 B;  3HH2 A;  1KAT W;  4LXS J;  4UI2 B;  5BPU A;  1ES7 A;  3P9W A;  5HHD A;  1WQ9 A;  1ZKZ A;  1KLC A;  4GLS E;  4XPJ A;  4KV5 A;  2FJH V;  4KXZ A;  4ZBN A;  1M4U A;  3B4V A;  4KZN A;  4ZFF C;  2R53 A;  2IFG E;  2H62 A;  4UHY A;  3RJR A;  1M4U L;  4AY9 B;  4EC7 A;  2QJA A;  1WWW V;  5HHV A;  4MQW B;  2QCQ A;  4UI0 A;  3V6B A;  3KFD A;  1HRP B;  1NYS B;  1TGK A;  4FAO A;  5BQ8 D;  1HD4 A;  2VPF A;  4MQW A;  5JZ7 A;  1LX5 A;  2GH0 C;  1FL7 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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