2QJXA

Structural basis of microtubule plus end tracking by xmap215, clip-170 and eb1
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
117
structure length
117
Chain Sequence
SRTELLTWLNGLLNLNYKKIEECGTGAAYCQIMDSIYGDLPMNRVKFNATAEYEFQTNYKILQSCFSRHGIEKTVYVDKLIRCKFQDNLEFLQWLKKHWIRHKDESVYDPDARRKYR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Protein BIM1
publication title Structural Basis of Microtubule Plus End Tracking by XMAP215, CLIP-170, and EB1.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 39
structure length 117
sequence length 117
ec nomenclature
pdb deposition date 2007-07-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 2qjxA00
2K2RA 3CO1A 1WYPA 2VZIB 1BHDA 2WA7A 1UEGA 2YRNA 2WA6A 2R0OA 5BVRA 1PXYA 5A38A 1BKRA 5L0OA 1MB8A 1AA2A 2DK9A 3HOPA 1AOAA 2JV9A 5A4BA 2WFNA 2D87A 2R8UA 2VZGB 1WYOA 4TXIA 4Q57B 2EYIA 3JALM 2D85A 4EDLA 4TXKA 1WYMA 1SH6A 1WKUA 3HOCA 3KMUB 3I6XA 4Q59A 1WYQA 1P2XA 2QJXA 3KY9A 1VKAA 3KMWB 1UJOA 1WJOA 1PA7A 2RR8A 2EYNA 1RT8A 2E9KA 2EE7A 3F7PA 1H67A 3REPB 2D89A 1WYNA 2L3GA 5J8EA 2VZCA 1WYLA 2K3SA 3FERA 1QAGA 1DXXA 3JAKM 4EDNA 1V5KA 5A37A 2WA5A 4Q58A 2D86A 3JARM 1SH5A 1TJTA 1P5SA 2VZDA 5A36A 4B7LA 3HORA 1WIXA 1WYRA 2QJZA 4EDMA 2D88A
chains in the Genus database with same CATH superfamily
2WDTA 2K2RA 2VE7C 3CO1A 1WYPA 2VZIB 1BHDA 2WA7A 3VP7A 4LVPA 1UEGA 2HL8A 2YRNA 2HL9A 2WA6A 2R0OA 5BVRA 1PXYA 5A38A 1BKRA 5L0OA 1MB8A 1AA2A 2DK9A 3HOPA 1AOAA 2JV9A 5A4BA 2WFNA 2D87A 2R8UA 2VZGB 1WYOA 4TXIA 4Q57B 2EYIA 5FMTA 2WE6A 3JALM 2D85A 4EDLA 4TXKA 1WYMA 1SH6A 4DDPA 1WKUA 3HOCA 3KMUB 3I6XA 2IGPA 4Q59A 1WYQA 1P2XA 2QJXA 3KY9A 2HKPA 1VKAA 3KMWB 1UJOA 1WJOA 1PA7A 2RR8A 2EYNA 2VE7A 1RT8A 2E9KA 2EE7A 3F7PA 1H67A 3REPB 2D89A 1WYNA 2L3GA 5J8EA 2VZCA 1WYLA 2K3SA 3FERA 1QAGA 1DXXA 3JAKM 4EDNA 3EAYA 1V5KA 5A37A 2WA5A 4Q58A 2D86A 3JARM 5FMUA 1SH5A 2EQOA 1TJTA 1EUVA 1P5SA 2VZDA 5A36A 4B7LA 3HORA 1WIXA 1WYRA 2QJZA 4LVRA 4EDMA 2D88A
chains in the Genus database with same CATH topology
2K2RA 3CO1A 1WYPA 2VZIB 1BHDA 2WA7A 1UEGA 2YRNA 2WA6A 2R0OA 5BVRA 1PXYA 5A38A 1BKRA 5L0OA 1MB8A 1AA2A 2DK9A 3HOPA 1AOAA 2JV9A 5A4BA 2WFNA 2D87A 2R8UA 2VZGB 1WYOA 4TXIA 4Q57B 2EYIA 3JALM 2D85A 4EDLA 4TXKA 1WYMA 1SH6A 1WKUA 3HOCA 3KMUB 3I6XA 4Q59A 1WYQA 1P2XA 2QJXA 3KY9A 1VKAA 3KMWB 1UJOA 1WJOA 1PA7A 2RR8A 2EYNA 1RT8A 2E9KA 2EE7A 3F7PA 1H67A 3REPB 2D89A 1WYNA 2L3GA 5J8EA 2VZCA 1WYLA 2K3SA 3FERA 1QAGA 1DXXA 3JAKM 4EDNA 1V5KA 5A37A 2WA5A 4Q58A 2D86A 3JARM 1SH5A 1TJTA 1P5SA 2VZDA 5A36A 4B7LA 3HORA 1WIXA 1WYRA 2QJZA 4EDMA 2D88A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K2R A;  3CO1 A;  1WYP A;  2VZI B;  1BHD A;  2WA7 A;  1UEG A;  2YRN A;  2WA6 A;  2R0O A;  5BVR A;  1PXY A;  5A38 A;  1BKR A;  5L0O A;  1MB8 A;  1AA2 A;  2DK9 A;  3HOP A;  1AOA A;  2JV9 A;  5A4B A;  2WFN A;  2D87 A;  2R8U A;  2VZG B;  1WYO A;  4TXI A;  4Q57 B;  2EYI A;  3JAL M;  2D85 A;  4EDL A;  4TXK A;  1WYM A;  1SH6 A;  1WKU A;  3HOC A;  3KMU B;  3I6X A;  4Q59 A;  1WYQ A;  1P2X A;  2QJX A;  3KY9 A;  1VKA A;  3KMW B;  1UJO A;  1WJO A;  1PA7 A;  2RR8 A;  2EYN A;  1RT8 A;  2E9K A;  2EE7 A;  3F7P A;  1H67 A;  3REP B;  2D89 A;  1WYN A;  2L3G A;  5J8E A;  2VZC A;  1WYL A;  2K3S A;  3FER A;  1QAG A;  1DXX A;  3JAK M;  4EDN A;  1V5K A;  5A37 A;  2WA5 A;  4Q58 A;  2D86 A;  3JAR M;  1SH5 A;  1TJT A;  1P5S A;  2VZD A;  5A36 A;  4B7L A;  3HOR A;  1WIX A;  1WYR A;  2QJZ A;  4EDM A;  2D88 A; 
#chains in the Genus database with same CATH topology
 2WDT A;  2K2R A;  2VE7 C;  3CO1 A;  1WYP A;  2VZI B;  1BHD A;  2WA7 A;  3VP7 A;  4LVP A;  1UEG A;  2HL8 A;  2YRN A;  2HL9 A;  2WA6 A;  2R0O A;  5BVR A;  1PXY A;  5A38 A;  1BKR A;  5L0O A;  1MB8 A;  1AA2 A;  2DK9 A;  3HOP A;  1AOA A;  2JV9 A;  5A4B A;  2WFN A;  2D87 A;  2R8U A;  2VZG B;  1WYO A;  4TXI A;  4Q57 B;  2EYI A;  5FMT A;  2WE6 A;  3JAL M;  2D85 A;  4EDL A;  4TXK A;  1WYM A;  1SH6 A;  4DDP A;  1WKU A;  3HOC A;  3KMU B;  3I6X A;  2IGP A;  4Q59 A;  1WYQ A;  1P2X A;  2QJX A;  3KY9 A;  2HKP A;  1VKA A;  3KMW B;  1UJO A;  1WJO A;  1PA7 A;  2RR8 A;  2EYN A;  2VE7 A;  1RT8 A;  2E9K A;  2EE7 A;  3F7P A;  1H67 A;  3REP B;  2D89 A;  1WYN A;  2L3G A;  5J8E A;  2VZC A;  1WYL A;  2K3S A;  3FER A;  1QAG A;  1DXX A;  3JAK M;  4EDN A;  3EAY A;  1V5K A;  5A37 A;  2WA5 A;  4Q58 A;  2D86 A;  3JAR M;  5FMU A;  1SH5 A;  2EQO A;  1TJT A;  1EUV A;  1P5S A;  2VZD A;  5A36 A;  4B7L A;  3HOR A;  1WIX A;  1WYR A;  2QJZ A;  4LVR A;  4EDM A;  2D88 A; 
#chains in the Genus database with same CATH homology
 2K2R A;  3CO1 A;  1WYP A;  2VZI B;  1BHD A;  2WA7 A;  1UEG A;  2YRN A;  2WA6 A;  2R0O A;  5BVR A;  1PXY A;  5A38 A;  1BKR A;  5L0O A;  1MB8 A;  1AA2 A;  2DK9 A;  3HOP A;  1AOA A;  2JV9 A;  5A4B A;  2WFN A;  2D87 A;  2R8U A;  2VZG B;  1WYO A;  4TXI A;  4Q57 B;  2EYI A;  3JAL M;  2D85 A;  4EDL A;  4TXK A;  1WYM A;  1SH6 A;  1WKU A;  3HOC A;  3KMU B;  3I6X A;  4Q59 A;  1WYQ A;  1P2X A;  2QJX A;  3KY9 A;  1VKA A;  3KMW B;  1UJO A;  1WJO A;  1PA7 A;  2RR8 A;  2EYN A;  1RT8 A;  2E9K A;  2EE7 A;  3F7P A;  1H67 A;  3REP B;  2D89 A;  1WYN A;  2L3G A;  5J8E A;  2VZC A;  1WYL A;  2K3S A;  3FER A;  1QAG A;  1DXX A;  3JAK M;  4EDN A;  1V5K A;  5A37 A;  2WA5 A;  4Q58 A;  2D86 A;  3JAR M;  1SH5 A;  1TJT A;  1P5S A;  2VZD A;  5A36 A;  4B7L A;  3HOR A;  1WIX A;  1WYR A;  2QJZ A;  4EDM A;  2D88 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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